Wall clock time and date at job start Tue Mar 31 2020 15:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46801 * 2 1 4 4 C 1.52998 * 109.47450 * 240.00100 * 2 1 3 5 5 C 1.53001 * 109.46935 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47262 * 59.99925 * 5 4 2 7 7 C 1.53003 * 109.46785 * 299.99637 * 6 5 4 8 8 C 1.52993 * 109.46935 * 60.00431 * 7 6 5 9 9 H 1.08999 * 109.47572 * 60.00053 * 8 7 6 10 10 C 1.53000 * 109.47205 * 179.97438 * 8 7 6 11 11 C 1.50701 * 109.46969 * 295.00040 * 10 8 7 12 12 O 1.21281 * 119.99950 * 359.97438 * 11 10 8 13 13 N 1.34780 * 119.99861 * 179.97438 * 11 10 8 14 14 C 1.46500 * 119.99802 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47155 * 179.97438 * 14 13 11 16 16 H 1.08997 * 109.49704 * 305.06847 * 15 14 13 17 17 C 1.53036 * 109.49941 * 184.99702 * 15 14 13 18 18 C 1.53037 * 109.53951 * 178.68331 * 17 15 14 19 19 C 1.53192 * 109.31248 * 61.36724 * 18 17 15 20 20 N 1.46926 * 108.77619 * 305.37011 * 19 18 17 21 21 C 1.36944 * 120.62908 * 233.60895 * 20 19 18 22 22 H 1.07994 * 120.00140 * 151.82800 * 21 20 19 23 23 C 1.38811 * 119.99542 * 331.82529 * 21 20 19 24 24 N 1.31621 * 120.00536 * 343.07289 * 23 21 20 25 25 Si 1.86804 * 119.99885 * 163.07604 * 23 21 20 26 26 H 1.48499 * 109.46951 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47180 * 119.99933 * 25 23 21 28 28 H 1.48501 * 109.47070 * 240.00123 * 25 23 21 29 29 C 1.46918 * 118.73984 * 53.60250 * 20 19 18 30 30 H 1.08999 * 109.46801 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47571 * 300.00118 * 1 2 3 32 32 H 1.09003 * 109.47315 * 60.00793 * 1 2 3 33 33 H 1.08999 * 109.46515 * 299.99691 * 4 2 1 34 34 H 1.08998 * 109.46997 * 59.99661 * 4 2 1 35 35 H 1.09005 * 109.46678 * 179.97438 * 5 4 2 36 36 H 1.08999 * 109.47353 * 299.99283 * 5 4 2 37 37 H 1.08999 * 109.47147 * 59.99871 * 6 5 4 38 38 H 1.08998 * 109.46739 * 179.97438 * 6 5 4 39 39 H 1.08998 * 109.46575 * 180.02562 * 7 6 5 40 40 H 1.08999 * 109.46947 * 300.00101 * 7 6 5 41 41 H 1.09007 * 109.47205 * 54.99656 * 10 8 7 42 42 H 1.09003 * 109.47483 * 174.99731 * 10 8 7 43 43 H 0.96999 * 120.00191 * 359.97438 * 13 11 10 44 44 H 1.08998 * 109.47374 * 299.99653 * 14 13 11 45 45 H 1.09003 * 109.47223 * 59.99774 * 14 13 11 46 46 H 1.09001 * 109.46535 * 298.70776 * 17 15 14 47 47 H 1.09004 * 109.45722 * 58.68229 * 17 15 14 48 48 H 1.09002 * 109.50060 * 181.32036 * 18 17 15 49 49 H 1.09003 * 109.49992 * 301.41486 * 18 17 15 50 50 H 1.09004 * 109.58591 * 65.15165 * 19 18 17 51 51 H 1.09004 * 109.59011 * 185.57742 * 19 18 17 52 52 H 0.97002 * 120.00214 * 179.97438 * 24 23 21 53 53 H 1.09006 * 109.58589 * 186.60991 * 29 20 19 54 54 H 1.09003 * 109.59055 * 66.18448 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5701 -0.7206 -1.2494 6 6 4.0806 -1.4414 -0.0001 7 6 3.5705 -0.7201 1.2490 8 6 2.0405 -0.7208 1.2493 9 1 1.6776 -1.7486 1.2496 10 6 1.5304 0.0000 2.4987 11 6 1.9296 -0.7784 3.7258 12 8 2.5597 -1.8085 3.6122 13 7 1.5865 -0.3299 4.9496 14 6 1.9741 -1.0869 6.1425 15 6 1.4652 -0.3654 7.3921 16 1 1.8280 0.6624 7.3918 17 6 1.9750 -1.0869 8.6417 18 6 1.4937 -0.3471 9.8920 19 6 -0.0378 -0.3490 9.9237 20 7 -0.5377 0.2115 8.6609 21 6 -1.4257 1.2541 8.6633 22 1 -1.4491 1.9453 7.8340 23 6 -2.2955 1.4222 9.7319 24 7 -2.5106 0.4288 10.5682 25 14 -3.1611 3.0584 9.9831 26 1 -2.7514 4.0043 8.9142 27 1 -4.6310 2.8545 9.9277 28 1 -2.7885 3.6173 11.3075 29 6 -0.0667 -0.3676 7.3954 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8901 33 1 1.6768 -1.7489 -1.2491 34 1 1.6767 -0.2074 -2.1392 35 1 3.9334 -1.2348 -2.1392 36 1 3.9330 0.3072 -1.2497 37 1 3.7177 -2.4692 0.0001 38 1 5.1705 -1.4413 -0.0006 39 1 3.9346 -1.2334 2.1390 40 1 3.9334 0.3077 1.2487 41 1 1.9646 0.9988 2.5449 42 1 0.4440 0.0778 2.4553 43 1 1.0829 0.4942 5.0405 44 1 1.5392 -2.0852 6.0965 45 1 3.0604 -1.1655 6.1858 46 1 1.5921 -2.1073 8.6536 47 1 3.0648 -1.1080 8.6295 48 1 1.8767 -0.8480 10.7811 49 1 1.8559 0.6808 9.8686 50 1 -0.3997 -1.3708 10.0384 51 1 -0.3869 0.2602 10.7575 52 1 -3.1182 0.5464 11.3151 53 1 -0.4348 0.2294 6.5610 54 1 -0.4309 -1.3909 7.3039 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530642845.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:01 Heat of formation + Delta-G solvation = -80.694338 kcal Electronic energy + Delta-G solvation = -28167.970922 eV Core-core repulsion = 24523.336259 eV Total energy + Delta-G solvation = -3644.634663 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.16108 -39.75422 -39.02200 -36.21214 -34.65389 -33.99978 -32.89749 -32.30004 -31.88394 -28.86505 -27.27458 -27.05793 -26.06073 -23.84418 -23.19831 -22.42079 -21.89348 -21.23900 -20.58907 -20.45145 -18.68613 -17.85680 -16.98714 -16.78486 -16.58876 -15.95865 -15.81369 -15.61947 -15.31817 -15.15643 -15.02468 -14.86622 -14.65442 -14.48841 -14.02331 -13.86057 -13.71621 -13.58411 -13.24988 -13.00315 -12.95858 -12.88016 -12.64849 -12.50355 -12.44606 -12.30135 -12.21823 -11.94612 -11.83144 -11.81977 -11.67888 -11.58248 -11.33612 -11.26698 -11.13177 -11.05431 -10.78758 -10.53952 -10.47113 -9.97271 -8.67559 -7.86394 -5.32616 1.46835 1.49016 1.59093 1.74233 2.32288 2.51517 3.28584 3.60375 3.72639 3.75514 3.84791 3.99701 4.01925 4.04103 4.10418 4.20208 4.31690 4.40496 4.43974 4.52149 4.58471 4.60009 4.61902 4.66320 4.73557 4.77250 4.77671 4.88399 4.88831 4.91587 4.92348 5.00662 5.03168 5.10150 5.10914 5.22959 5.24686 5.26297 5.32613 5.33902 5.35633 5.40423 5.42411 5.50377 5.54095 5.57568 5.62786 5.67407 5.69976 5.77942 6.39540 6.63931 7.15252 7.34329 7.86558 8.38930 9.20056 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.017441 B = 0.002510 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.046333 B =11153.968285 C =12412.106268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.082 4.082 3 H 0.080 0.920 4 C -0.113 4.113 5 C -0.116 4.116 6 C -0.117 4.117 7 C -0.118 4.118 8 C -0.060 4.060 9 H 0.053 0.947 10 C -0.137 4.137 11 C 0.507 3.493 12 O -0.580 6.580 13 N -0.723 5.723 14 C 0.139 3.861 15 C -0.099 4.099 16 H 0.077 0.923 17 C -0.098 4.098 18 C -0.130 4.130 19 C 0.172 3.828 20 N -0.610 5.610 21 C -0.259 4.259 22 H 0.072 0.928 23 C -0.054 4.054 24 N -0.937 5.937 25 Si 0.966 3.034 26 H -0.262 1.262 27 H -0.295 1.295 28 H -0.292 1.292 29 C 0.154 3.846 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.048 0.952 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.063 0.937 41 H 0.113 0.887 42 H 0.110 0.890 43 H 0.411 0.589 44 H 0.051 0.949 45 H 0.068 0.932 46 H 0.053 0.947 47 H 0.079 0.921 48 H 0.068 0.932 49 H 0.054 0.946 50 H -0.009 1.009 51 H 0.051 0.949 52 H 0.249 0.751 53 H 0.058 0.942 54 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.945 0.831 -21.078 24.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.100 4.100 3 H 0.098 0.902 4 C -0.151 4.151 5 C -0.154 4.154 6 C -0.155 4.155 7 C -0.155 4.155 8 C -0.079 4.079 9 H 0.072 0.928 10 C -0.176 4.176 11 C 0.296 3.704 12 O -0.460 6.460 13 N -0.375 5.375 14 C 0.014 3.986 15 C -0.120 4.120 16 H 0.095 0.905 17 C -0.136 4.136 18 C -0.169 4.169 19 C 0.047 3.953 20 N -0.333 5.333 21 C -0.389 4.389 22 H 0.090 0.910 23 C -0.249 4.249 24 N -0.584 5.584 25 Si 0.795 3.205 26 H -0.186 1.186 27 H -0.222 1.222 28 H -0.219 1.219 29 C 0.028 3.972 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.132 0.868 42 H 0.128 0.872 43 H 0.247 0.753 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.071 0.929 47 H 0.097 0.903 48 H 0.087 0.913 49 H 0.073 0.927 50 H 0.009 0.991 51 H 0.070 0.930 52 H 0.058 0.942 53 H 0.077 0.923 54 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 12.275 0.107 -21.030 24.351 hybrid contribution -1.126 0.616 0.927 1.583 sum 11.150 0.723 -20.103 22.999 Atomic orbital electron populations 1.21936 0.94916 1.01718 1.02432 1.21137 0.95639 0.99706 0.93562 0.90201 1.21582 0.95476 1.00401 0.97594 1.21533 0.95704 1.00875 0.97267 1.21494 1.00097 0.99002 0.94903 1.21649 0.95111 1.00540 0.98223 1.20862 0.95512 0.98733 0.92795 0.92811 1.21901 1.04213 1.00565 0.90928 1.21285 0.78292 0.85429 0.85412 1.90641 1.41757 1.26413 1.87186 1.46118 1.57601 1.28115 1.05653 1.21193 0.99423 0.94655 0.83326 1.21704 0.96580 0.99940 0.93736 0.90474 1.21342 1.00479 0.98394 0.93372 1.21999 0.96834 1.00074 0.97978 1.20632 0.90746 0.94818 0.89126 1.44326 1.49865 1.38030 1.01059 1.19578 1.10775 1.02616 1.05907 0.91028 1.25835 0.98551 1.00502 1.00046 1.70208 1.38922 1.31239 1.18009 0.85219 0.77454 0.80167 0.77685 1.18609 1.22207 1.21932 1.21010 0.92415 0.95252 0.88504 0.93423 0.91894 0.91782 0.92836 0.90893 0.91585 0.91443 0.93319 0.92072 0.92727 0.91808 0.86850 0.87153 0.75321 0.93033 0.91372 0.92861 0.90278 0.91334 0.92743 0.99065 0.93023 0.94237 0.92332 0.97921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.85 71.98 0.64 -1.36 16 2 C -0.08 -1.13 2.25 -10.79 -0.02 -1.16 16 3 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 4 C -0.11 -1.51 5.20 30.59 0.16 -1.35 16 5 C -0.12 -1.56 5.92 30.59 0.18 -1.38 16 6 C -0.12 -2.02 5.92 30.60 0.18 -1.84 16 7 C -0.12 -2.30 4.94 30.59 0.15 -2.15 16 8 C -0.06 -1.10 1.36 -10.80 -0.01 -1.11 16 9 H 0.05 1.25 7.95 -2.39 -0.02 1.23 16 10 C -0.14 -2.37 4.96 29.85 0.15 -2.23 16 11 C 0.51 12.69 7.55 87.66 0.66 13.35 16 12 O -0.58 -18.79 13.97 -3.03 -0.04 -18.83 16 13 N -0.72 -17.44 5.33 -463.05 -2.47 -19.91 16 14 C 0.14 3.78 5.07 86.38 0.44 4.22 16 15 C -0.10 -3.04 2.37 -10.72 -0.03 -3.07 16 16 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 17 C -0.10 -3.01 5.17 30.62 0.16 -2.85 16 18 C -0.13 -4.71 6.08 30.67 0.19 -4.52 16 19 C 0.17 8.28 5.30 86.36 0.46 8.74 16 20 N -0.61 -29.81 2.99 -699.09 -2.09 -31.91 16 21 C -0.26 -13.79 9.58 84.03 0.81 -12.99 16 22 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16 23 C -0.05 -2.99 4.92 84.86 0.42 -2.57 16 24 N -0.94 -55.44 11.20 21.65 0.24 -55.20 16 25 Si 0.97 44.03 29.59 68.60 2.03 46.06 16 26 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 27 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 28 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 29 C 0.15 6.02 5.60 86.36 0.48 6.51 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.78 6.32 -2.39 -0.02 0.76 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.05 1.39 5.95 -2.39 -0.01 1.38 16 40 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 42 H 0.11 1.64 6.18 -2.39 -0.01 1.63 16 43 H 0.41 8.56 7.71 -92.71 -0.71 7.85 16 44 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.07 1.80 8.14 -2.39 -0.02 1.79 16 46 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 48 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 49 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 50 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 51 H 0.05 2.82 6.06 -2.38 -0.01 2.80 16 52 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 53 H 0.06 2.15 7.14 -2.38 -0.02 2.13 16 54 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 Total: -1.00 -66.38 401.80 2.80 -63.58 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.13 Total: 21.96 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 5.00 Total: -5.76 kcal Atomic # 7 Polarization: -102.69 SS G_CDS: -4.32 Total: -107.01 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.04 Total: -18.83 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -66.38 2.80 -63.58 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530642845.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.111 kcal (2) G-P(sol) polarization free energy of solvation -66.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds