Wall clock time and date at job start Tue Mar 31 2020 13:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47549 * 2 1 4 4 N 1.46501 * 109.46917 * 120.00256 * 2 1 3 5 5 C 1.46498 * 120.00125 * 119.61522 * 4 2 1 6 6 C 1.50694 * 109.47480 * 266.47849 * 5 4 2 7 7 H 1.08002 * 119.99725 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00361 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00180 * 180.02562 * 8 6 5 10 10 Si 1.86796 * 120.00009 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.47171 * 270.00036 * 10 8 6 12 12 H 1.48497 * 109.47075 * 150.00065 * 10 8 6 13 13 H 1.48501 * 109.46869 * 30.00349 * 10 8 6 14 14 C 1.34780 * 120.00086 * 299.61330 * 4 2 1 15 15 O 1.21280 * 119.99627 * 3.57379 * 14 4 2 16 16 C 1.50698 * 120.00137 * 183.57094 * 14 4 2 17 17 H 1.08998 * 110.63142 * 311.03341 * 16 14 4 18 18 C 1.55137 * 110.70716 * 74.33450 * 16 14 4 19 19 C 1.54900 * 101.65300 * 154.03774 * 18 16 14 20 20 N 1.47843 * 104.79661 * 322.92400 * 19 18 16 21 21 C 1.46896 * 110.99909 * 146.36687 * 20 19 18 22 22 C 1.53007 * 109.47191 * 179.16171 * 21 20 19 23 23 C 1.53001 * 109.46883 * 180.02562 * 22 21 20 24 24 C 1.52997 * 109.47296 * 59.99881 * 23 22 21 25 25 C 1.52993 * 109.47246 * 299.99732 * 24 23 22 26 26 C 1.53001 * 109.47387 * 60.00085 * 25 24 23 27 27 C 1.47441 * 108.56554 * 24.09987 * 20 19 18 28 28 H 1.09008 * 109.47009 * 307.06807 * 1 2 3 29 29 H 1.09005 * 109.47114 * 67.05967 * 1 2 3 30 30 H 1.09002 * 109.47508 * 187.06264 * 1 2 3 31 31 H 1.09005 * 109.47126 * 239.99660 * 2 1 3 32 32 H 1.09005 * 109.47328 * 184.42190 * 3 2 1 33 33 H 1.08993 * 109.47310 * 304.42304 * 3 2 1 34 34 H 1.09008 * 109.46870 * 64.42090 * 3 2 1 35 35 H 1.09006 * 109.47464 * 146.48065 * 5 4 2 36 36 H 1.08998 * 109.47448 * 26.48458 * 5 4 2 37 37 H 0.97000 * 120.00277 * 180.02562 * 9 8 6 38 38 H 1.09007 * 110.98871 * 272.12707 * 18 16 14 39 39 H 1.09003 * 110.99099 * 35.94016 * 18 16 14 40 40 H 1.09006 * 110.37092 * 204.09997 * 19 18 16 41 41 H 1.08998 * 110.47257 * 81.80658 * 19 18 16 42 42 H 1.09004 * 109.47201 * 299.15673 * 21 20 19 43 43 H 1.08999 * 109.47055 * 299.99945 * 22 21 20 44 44 H 1.08991 * 109.47112 * 59.99945 * 22 21 20 45 45 H 1.08999 * 109.47166 * 299.99798 * 23 22 21 46 46 H 1.09000 * 109.46559 * 179.97438 * 23 22 21 47 47 H 1.09000 * 109.46923 * 179.97438 * 24 23 22 48 48 H 1.08999 * 109.47080 * 59.99865 * 24 23 22 49 49 H 1.08999 * 109.47190 * 300.00066 * 25 24 23 50 50 H 1.09004 * 109.47278 * 180.02562 * 25 24 23 51 51 H 1.08998 * 109.47698 * 180.02562 * 26 25 24 52 52 H 1.08999 * 109.46970 * 59.99847 * 26 25 24 53 53 H 1.09004 * 109.89065 * 239.60091 * 27 20 19 54 54 H 1.09006 * 109.89109 * 118.41182 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 2.8535 -1.8867 1.0618 6 6 1.9825 -3.1155 1.1080 7 1 0.9136 -3.0156 1.2261 8 6 2.5501 -4.3674 1.0005 9 7 1.7899 -5.4398 1.0404 10 14 4.3989 -4.5403 0.7969 11 1 4.7405 -4.5339 -0.6483 12 1 4.8466 -5.8186 1.4058 13 1 5.0794 -3.4057 1.4715 14 6 1.6991 -0.2257 2.4203 15 8 0.9550 0.7254 2.5326 16 6 2.2666 -0.8877 3.6494 17 1 2.1355 -1.9686 3.5986 18 6 3.7633 -0.5207 3.8285 19 6 3.9438 -0.6814 5.3586 20 7 2.6757 -0.1940 5.9417 21 6 2.3326 -0.9442 7.1571 22 6 1.0283 -0.3985 7.7421 23 6 0.6713 -1.1795 9.0084 24 6 1.7945 -1.0263 10.0359 25 6 3.0987 -1.5719 9.4510 26 6 3.4558 -0.7910 8.1847 27 6 1.6138 -0.3184 4.9265 28 1 -0.3633 0.6195 0.8201 29 1 -0.3633 0.4006 -0.9464 30 1 -0.3634 -1.0199 0.1264 31 1 1.8933 -0.5139 -0.8900 32 1 3.1272 1.4434 -0.0792 33 1 1.6135 1.9787 -0.8476 34 1 1.7428 1.9329 0.9270 35 1 3.5735 -1.9208 1.8794 36 1 3.3851 -1.8537 0.1108 37 1 2.1893 -6.3206 0.9652 38 1 4.4035 -1.2153 3.2847 39 1 3.9530 0.5071 3.5187 40 1 4.7798 -0.0752 5.7078 41 1 4.1020 -1.7288 5.6158 42 1 2.2069 -1.9984 6.9101 43 1 1.1539 0.6556 7.9891 44 1 0.2282 -0.5073 7.0100 45 1 0.5458 -2.2338 8.7618 46 1 -0.2577 -0.7905 9.4253 47 1 1.5399 -1.5823 10.9381 48 1 1.9199 0.0280 10.2825 49 1 2.9732 -2.6262 9.2044 50 1 3.8988 -1.4631 10.1832 51 1 4.3847 -1.1800 7.7677 52 1 3.5813 0.2633 8.4313 53 1 1.1835 0.6612 4.7180 54 1 0.8391 -0.9981 5.2815 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531391926.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:42 Heat of formation + Delta-G solvation = -67.933451 kcal Electronic energy + Delta-G solvation = -29586.299435 eV Core-core repulsion = 25942.218126 eV Total energy + Delta-G solvation = -3644.081309 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.58340 -40.25642 -38.03405 -37.01413 -35.06013 -33.87913 -32.60076 -31.91190 -29.93105 -29.46777 -29.03206 -28.03862 -25.02330 -24.09537 -23.66746 -22.94629 -21.89031 -21.40101 -20.61204 -19.53549 -19.04604 -18.04374 -17.60363 -16.86414 -16.38218 -16.11282 -16.01114 -15.44738 -15.14680 -15.02426 -14.80955 -14.75623 -14.66932 -14.34663 -14.22440 -14.09860 -13.88752 -13.50467 -13.36766 -13.24603 -12.98805 -12.84452 -12.74367 -12.59056 -12.52112 -12.41573 -12.27137 -12.19527 -12.05025 -11.98302 -11.94435 -11.77556 -11.71574 -11.63972 -11.43009 -11.13233 -10.86948 -10.80367 -10.36688 -9.40085 -9.28349 -8.31384 -6.38665 1.38276 1.38563 1.48607 1.74655 2.27283 2.32490 2.91084 3.02554 3.52628 3.56714 3.77161 3.84417 3.87237 4.04348 4.11703 4.24114 4.27442 4.31102 4.33979 4.35895 4.40009 4.45850 4.50554 4.59260 4.61130 4.63652 4.66293 4.70830 4.75170 4.76745 4.89962 4.92445 4.94603 4.95495 4.98859 5.03292 5.07211 5.13898 5.18097 5.19249 5.28014 5.30341 5.32557 5.35863 5.37572 5.38431 5.45378 5.56234 5.85725 5.95689 6.17353 6.19385 6.62134 6.71728 7.24187 7.39077 8.85100 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.011385 B = 0.004176 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.683841 B = 6702.942799 C = 8020.260793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 C -0.153 4.153 4 N -0.592 5.592 5 C 0.214 3.786 6 C -0.539 4.539 7 H 0.025 0.975 8 C 0.018 3.982 9 N -0.944 5.944 10 Si 0.939 3.061 11 H -0.265 1.265 12 H -0.286 1.286 13 H -0.232 1.232 14 C 0.530 3.470 15 O -0.576 6.576 16 C -0.131 4.131 17 H 0.086 0.914 18 C -0.109 4.109 19 C 0.049 3.951 20 N -0.522 5.522 21 C 0.077 3.923 22 C -0.111 4.111 23 C -0.117 4.117 24 C -0.116 4.116 25 C -0.117 4.117 26 C -0.104 4.104 27 C 0.067 3.933 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.026 0.974 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.043 0.957 37 H 0.267 0.733 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.049 0.951 42 H 0.024 0.976 43 H 0.070 0.930 44 H 0.046 0.954 45 H 0.053 0.947 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.067 0.933 49 H 0.054 0.946 50 H 0.078 0.922 51 H 0.064 0.936 52 H 0.072 0.928 53 H 0.081 0.919 54 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.647 10.473 12.047 17.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.033 3.967 3 C -0.211 4.211 4 N -0.322 5.322 5 C 0.092 3.908 6 C -0.577 4.577 7 H 0.043 0.957 8 C -0.180 4.180 9 N -0.584 5.584 10 Si 0.761 3.239 11 H -0.189 1.189 12 H -0.212 1.212 13 H -0.155 1.155 14 C 0.319 3.681 15 O -0.458 6.458 16 C -0.154 4.154 17 H 0.104 0.896 18 C -0.147 4.147 19 C -0.078 4.078 20 N -0.246 5.246 21 C -0.031 4.031 22 C -0.149 4.149 23 C -0.155 4.155 24 C -0.153 4.153 25 C -0.155 4.155 26 C -0.142 4.142 27 C -0.061 4.061 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.046 0.954 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.121 0.879 41 H 0.068 0.932 42 H 0.042 0.958 43 H 0.089 0.911 44 H 0.065 0.935 45 H 0.072 0.928 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.086 0.914 49 H 0.073 0.927 50 H 0.097 0.903 51 H 0.083 0.917 52 H 0.090 0.910 53 H 0.099 0.901 54 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.324 11.297 12.217 17.801 hybrid contribution -0.180 -1.946 -0.825 2.122 sum 6.144 9.350 11.392 15.968 Atomic orbital electron populations 1.22073 0.95807 1.00609 1.02807 1.21136 0.94368 0.93809 0.87399 1.22069 1.01073 0.94789 1.03129 1.48062 1.50964 1.27824 1.05367 1.19763 0.90613 0.81943 0.98523 1.21534 0.94087 0.91108 1.50990 0.95708 1.25808 1.03461 0.94957 0.93807 1.70065 1.38131 0.98865 1.51307 0.85842 0.79306 0.79033 0.79696 1.18948 1.21154 1.15464 1.20348 0.80012 0.82795 0.84938 1.90511 1.38094 1.30236 1.86927 1.22452 0.98441 1.00970 0.93513 0.89597 1.22690 0.92382 1.02444 0.97183 1.23066 0.93229 0.99271 0.92262 1.63792 1.02290 1.54006 1.04547 1.21921 0.96689 0.94165 0.90353 1.21595 0.95511 1.00597 0.97156 1.21524 0.99141 0.99785 0.95056 1.21526 0.94223 1.01730 0.97824 1.21529 0.98087 0.99199 0.96663 1.21540 0.96670 1.01466 0.94540 1.22584 0.93733 1.00923 0.88857 0.92322 0.89953 0.95438 0.89403 0.92152 0.89869 0.92621 0.92963 0.93898 0.92355 0.89661 0.90254 0.87948 0.93225 0.95756 0.91134 0.93501 0.92808 0.91016 0.90958 0.91411 0.92682 0.90330 0.91744 0.90960 0.90108 0.93553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.64 9.00 71.98 0.65 -5.00 16 2 C 0.14 4.82 3.28 44.99 0.15 4.97 16 3 C -0.15 -4.51 9.17 71.98 0.66 -3.85 16 4 N -0.59 -23.91 2.41 -802.16 -1.94 -25.85 16 5 C 0.21 9.12 3.89 85.63 0.33 9.46 16 6 C -0.54 -28.84 9.41 25.60 0.24 -28.60 16 7 H 0.02 1.55 8.06 -2.91 -0.02 1.53 16 8 C 0.02 0.99 5.47 84.65 0.46 1.45 16 9 N -0.94 -56.32 13.96 21.45 0.30 -56.02 16 10 Si 0.94 39.43 27.47 68.60 1.88 41.31 16 11 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 12 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 13 H -0.23 -8.48 6.54 99.48 0.65 -7.83 16 14 C 0.53 21.58 6.34 87.66 0.56 22.14 16 15 O -0.58 -24.89 11.70 -3.03 -0.04 -24.92 16 16 C -0.13 -4.82 2.34 -10.36 -0.02 -4.85 16 17 H 0.09 3.63 7.23 -2.39 -0.02 3.62 16 18 C -0.11 -3.23 5.99 31.98 0.19 -3.04 16 19 C 0.05 1.26 5.40 86.77 0.47 1.73 16 20 N -0.52 -14.69 5.03 -860.35 -4.33 -19.01 16 21 C 0.08 1.92 1.53 44.92 0.07 1.99 16 22 C -0.11 -2.60 5.07 30.60 0.16 -2.44 16 23 C -0.12 -2.24 5.92 30.59 0.18 -2.05 16 24 C -0.12 -1.82 5.92 30.59 0.18 -1.64 16 25 C -0.12 -1.93 5.92 30.59 0.18 -1.75 16 26 C -0.10 -2.05 5.09 30.60 0.16 -1.89 16 27 C 0.07 2.28 5.62 86.65 0.49 2.76 16 28 H 0.06 2.29 6.31 -2.38 -0.02 2.28 16 29 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 30 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.09 2.99 7.75 -2.38 -0.02 2.97 16 32 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.05 1.88 6.15 -2.38 -0.01 1.87 16 35 H 0.05 2.10 3.85 -2.38 -0.01 2.09 16 36 H 0.04 1.73 7.27 -2.39 -0.02 1.71 16 37 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 38 H 0.08 2.47 6.45 -2.38 -0.02 2.46 16 39 H 0.08 2.30 8.04 -2.39 -0.02 2.28 16 40 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 41 H 0.05 1.27 7.57 -2.39 -0.02 1.26 16 42 H 0.02 0.69 8.10 -2.38 -0.02 0.67 16 43 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.05 1.25 6.50 -2.39 -0.02 1.23 16 45 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 51 H 0.06 1.23 7.03 -2.39 -0.02 1.21 16 52 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 53 H 0.08 3.00 6.73 -2.39 -0.02 2.98 16 54 H 0.05 1.62 6.35 -2.38 -0.02 1.60 16 Total: -1.00 -63.71 394.22 1.77 -61.94 By element: Atomic # 1 Polarization: 32.37 SS G_CDS: 0.79 Total: 33.17 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 5.09 Total: -10.61 kcal Atomic # 7 Polarization: -94.92 SS G_CDS: -5.96 Total: -100.88 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.04 Total: -24.92 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 1.88 Total: 41.31 kcal Total: -63.71 1.77 -61.94 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531391926.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.992 kcal (2) G-P(sol) polarization free energy of solvation -63.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds