Wall clock time and date at job start Tue Mar 31 2020 13:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47280 * 2 1 4 4 N 1.46499 * 109.47509 * 119.99800 * 2 1 3 5 5 C 1.46501 * 119.99895 * 119.58548 * 4 2 1 6 6 C 1.50707 * 109.47235 * 270.00432 * 5 4 2 7 7 H 1.08007 * 119.99383 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00438 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99545 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00433 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46805 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.46892 * 119.99748 * 10 8 6 13 13 H 1.48497 * 109.47153 * 240.00324 * 10 8 6 14 14 C 1.34772 * 120.00124 * 299.59048 * 4 2 1 15 15 O 1.21285 * 120.00128 * 5.32497 * 14 4 2 16 16 C 1.50699 * 120.00028 * 185.32446 * 14 4 2 17 17 H 1.08996 * 110.76896 * 32.77676 * 16 14 4 18 18 C 1.55143 * 110.70888 * 269.57223 * 16 14 4 19 19 C 1.54898 * 101.65529 * 205.96303 * 18 16 14 20 20 N 1.47844 * 104.79549 * 37.07546 * 19 18 16 21 21 C 1.46904 * 110.99963 * 213.63150 * 20 19 18 22 22 C 1.52990 * 109.47400 * 300.84306 * 21 20 19 23 23 C 1.53005 * 109.47269 * 179.97438 * 22 21 20 24 24 C 1.52996 * 109.46814 * 59.99970 * 23 22 21 25 25 C 1.52993 * 109.47192 * 299.99672 * 24 23 22 26 26 C 1.52996 * 109.47186 * 180.83849 * 21 20 19 27 27 C 1.47440 * 108.56892 * 335.89920 * 20 19 18 28 28 H 1.09001 * 109.47350 * 306.57306 * 1 2 3 29 29 H 1.08997 * 109.47197 * 66.57329 * 1 2 3 30 30 H 1.08994 * 109.47357 * 186.57742 * 1 2 3 31 31 H 1.08998 * 109.47276 * 240.00181 * 2 1 3 32 32 H 1.08995 * 109.47173 * 173.90599 * 3 2 1 33 33 H 1.08997 * 109.46856 * 293.90696 * 3 2 1 34 34 H 1.09000 * 109.46562 * 53.90270 * 3 2 1 35 35 H 1.08993 * 109.47465 * 30.00241 * 5 4 2 36 36 H 1.09000 * 109.46968 * 150.00944 * 5 4 2 37 37 H 0.97002 * 119.99537 * 179.97438 * 9 8 6 38 38 H 1.08999 * 110.98654 * 324.06173 * 18 16 14 39 39 H 1.09000 * 110.98471 * 87.83185 * 18 16 14 40 40 H 1.08998 * 110.37872 * 278.24426 * 19 18 16 41 41 H 1.09007 * 110.37467 * 155.89884 * 19 18 16 42 42 H 1.08998 * 109.46905 * 60.84381 * 21 20 19 43 43 H 1.08998 * 109.47153 * 299.99924 * 22 21 20 44 44 H 1.08999 * 109.47461 * 59.99737 * 22 21 20 45 45 H 1.09010 * 109.46743 * 179.97438 * 23 22 21 46 46 H 1.09001 * 109.46976 * 299.99635 * 23 22 21 47 47 H 1.09006 * 109.46584 * 179.97438 * 24 23 22 48 48 H 1.08998 * 109.47126 * 60.00160 * 24 23 22 49 49 H 1.08998 * 109.47484 * 300.00269 * 25 24 23 50 50 H 1.08999 * 109.47425 * 180.02562 * 25 24 23 51 51 H 1.08999 * 109.47831 * 300.00378 * 26 21 20 52 52 H 1.09001 * 109.47261 * 60.00347 * 26 21 20 53 53 H 1.09001 * 109.88905 * 120.39406 * 27 20 19 54 54 H 1.08996 * 109.89203 * 241.58707 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.8531 -1.8869 1.0617 6 6 1.9745 -3.1107 1.0216 7 1 0.9015 -3.0075 1.0898 8 6 2.5403 -4.3620 0.8987 9 7 3.8469 -4.4876 0.8162 10 14 1.4512 -5.8788 0.8497 11 1 0.0278 -5.4699 0.9588 12 1 1.6622 -6.5983 -0.4321 13 1 1.7979 -6.7739 1.9827 14 6 1.6997 -0.2253 2.4202 15 8 0.9310 0.7059 2.5339 16 6 2.2985 -0.8621 3.6478 17 1 3.3062 -1.2234 3.4432 18 6 1.3967 -2.0145 4.1634 19 6 1.7640 -2.0502 5.6677 20 7 1.9582 -0.6333 6.0427 21 6 3.0036 -0.4980 7.0658 22 6 2.6101 -1.3021 8.3065 23 6 3.6993 -1.1616 9.3719 24 6 3.8570 0.3128 9.7486 25 6 4.2506 1.1169 8.5079 26 6 3.1609 0.9765 7.4424 27 6 2.3040 0.1302 4.8297 28 1 -0.3634 0.6123 0.8253 29 1 -0.3633 0.4086 -0.9429 30 1 -0.3634 -1.0208 0.1177 31 1 1.8933 -0.5138 -0.8900 32 1 3.1245 1.4445 0.1091 33 1 1.7685 1.9239 -0.9395 34 1 1.5903 1.9869 0.8304 35 1 3.4316 -1.8247 0.1401 36 1 3.5312 -1.9543 1.9125 37 1 4.2449 -5.3679 0.7301 38 1 0.3420 -1.7769 4.0244 39 1 1.6501 -2.9562 3.6765 40 1 2.6850 -2.6127 5.8203 41 1 0.9507 -2.4878 6.2467 42 1 3.9476 -0.8752 6.6727 43 1 1.6661 -0.9248 8.6996 44 1 2.4981 -2.3526 8.0383 45 1 3.4186 -1.7342 10.2560 46 1 4.6431 -1.5392 8.9785 47 1 4.6327 0.4128 10.5079 48 1 2.9132 0.6903 10.1419 49 1 5.1945 0.7394 8.1146 50 1 4.3635 2.1672 8.7763 51 1 3.4413 1.5495 6.5585 52 1 2.2169 1.3539 7.8355 53 1 1.5642 0.9126 4.6605 54 1 3.2948 0.5711 4.9390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531391927.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:46 Heat of formation + Delta-G solvation = -69.382825 kcal Electronic energy + Delta-G solvation = -29537.426889 eV Core-core repulsion = 25893.282731 eV Total energy + Delta-G solvation = -3644.144159 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.51621 -40.22769 -38.01652 -36.92787 -35.08163 -33.70128 -32.53331 -31.89409 -29.88957 -29.11683 -28.80462 -28.01853 -25.05827 -24.43530 -23.61950 -22.99530 -21.79653 -21.40399 -20.59892 -19.51325 -18.52678 -18.01348 -17.55257 -16.84098 -16.43180 -16.23074 -15.74194 -15.56448 -15.11646 -15.01725 -14.82069 -14.61048 -14.43637 -14.34602 -14.19878 -13.97086 -13.76653 -13.42337 -13.21928 -13.19877 -12.95310 -12.80228 -12.73887 -12.70762 -12.66574 -12.37666 -12.21977 -12.16709 -12.13798 -11.98995 -11.90241 -11.80645 -11.66979 -11.53610 -11.41506 -11.11549 -10.85309 -10.61651 -10.30719 -9.41156 -9.25737 -8.19055 -6.31457 1.38209 1.42729 1.52143 1.78276 2.29280 2.44463 2.93449 3.11245 3.58433 3.65015 3.81279 3.86246 3.92352 4.05178 4.13843 4.26806 4.28298 4.31202 4.34344 4.36648 4.41482 4.47165 4.51668 4.61056 4.61480 4.65211 4.72326 4.76068 4.78200 4.90789 4.95488 4.96638 5.01124 5.03643 5.04875 5.13974 5.15452 5.19141 5.20590 5.23895 5.29862 5.31547 5.33982 5.37153 5.39504 5.43116 5.57870 5.69654 5.95774 5.98019 6.08513 6.21107 6.61764 6.86384 7.34874 7.46623 8.86562 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.011695 B = 0.004054 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.617106 B = 6904.543641 C = 8538.758500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.136 3.864 3 C -0.152 4.152 4 N -0.596 5.596 5 C 0.252 3.748 6 C -0.529 4.529 7 H 0.050 0.950 8 C 0.026 3.974 9 N -0.920 5.920 10 Si 0.948 3.052 11 H -0.272 1.272 12 H -0.281 1.281 13 H -0.277 1.277 14 C 0.528 3.472 15 O -0.578 6.578 16 C -0.124 4.124 17 H 0.086 0.914 18 C -0.102 4.102 19 C 0.054 3.946 20 N -0.526 5.526 21 C 0.079 3.921 22 C -0.108 4.108 23 C -0.116 4.116 24 C -0.117 4.117 25 C -0.115 4.115 26 C -0.110 4.110 27 C 0.068 3.932 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.035 0.965 31 H 0.081 0.919 32 H 0.048 0.952 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.017 0.983 36 H 0.028 0.972 37 H 0.266 0.734 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.049 0.951 41 H 0.092 0.908 42 H 0.030 0.970 43 H 0.068 0.932 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.058 0.942 47 H 0.073 0.927 48 H 0.064 0.936 49 H 0.058 0.942 50 H 0.073 0.927 51 H 0.054 0.946 52 H 0.066 0.934 53 H 0.079 0.921 54 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.619 7.891 12.614 14.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.033 3.967 3 C -0.210 4.210 4 N -0.326 5.326 5 C 0.131 3.869 6 C -0.568 4.568 7 H 0.068 0.932 8 C -0.175 4.175 9 N -0.560 5.560 10 Si 0.774 3.226 11 H -0.197 1.197 12 H -0.207 1.207 13 H -0.202 1.202 14 C 0.317 3.683 15 O -0.460 6.460 16 C -0.146 4.146 17 H 0.104 0.896 18 C -0.141 4.141 19 C -0.074 4.074 20 N -0.250 5.250 21 C -0.030 4.030 22 C -0.146 4.146 23 C -0.154 4.154 24 C -0.154 4.154 25 C -0.153 4.153 26 C -0.148 4.148 27 C -0.060 4.060 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.035 0.965 36 H 0.046 0.954 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.068 0.932 41 H 0.110 0.890 42 H 0.048 0.952 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.077 0.923 47 H 0.092 0.908 48 H 0.083 0.917 49 H 0.077 0.923 50 H 0.092 0.908 51 H 0.072 0.928 52 H 0.085 0.915 53 H 0.097 0.903 54 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.076 8.433 12.837 15.359 hybrid contribution 0.459 -1.562 -0.980 1.900 sum 0.382 6.871 11.857 13.710 Atomic orbital electron populations 1.22058 0.95048 1.01119 1.02774 1.21079 0.94808 0.93359 0.87447 1.22065 1.00455 0.95312 1.03141 1.48347 1.50691 1.28319 1.05263 1.19121 0.89732 0.81226 0.96810 1.21583 0.93252 0.91495 1.50433 0.93157 1.25537 0.95928 1.01336 0.94651 1.70015 1.10740 1.24671 1.50529 0.85658 0.79276 0.79863 0.77845 1.19656 1.20654 1.20228 1.20328 0.80759 0.82374 0.84862 1.90509 1.37331 1.31245 1.86880 1.22411 1.00614 0.97773 0.93769 0.89588 1.22496 0.98441 0.97607 0.95540 1.22987 1.00889 0.89372 0.94112 1.63739 1.43438 1.08906 1.08913 1.21914 0.91618 0.97095 0.92338 1.21554 0.99543 0.99218 0.94249 1.21522 0.98298 0.97208 0.98334 1.21533 1.01959 0.94660 0.97251 1.21523 0.97699 1.00795 0.95306 1.21610 0.99876 0.94397 0.98905 1.22644 1.00600 0.95890 0.86900 0.92196 0.90145 0.94546 0.90093 0.93279 0.89676 0.92486 0.96532 0.95397 0.92468 0.92192 0.90429 0.93222 0.89013 0.95169 0.91372 0.92297 0.90702 0.92347 0.90843 0.91725 0.92303 0.90840 0.92767 0.91512 0.90329 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.39 9.00 71.98 0.65 -4.74 16 2 C 0.14 5.03 3.28 44.99 0.15 5.18 16 3 C -0.15 -4.82 9.02 71.98 0.65 -4.17 16 4 N -0.60 -25.12 2.41 -802.14 -1.93 -27.05 16 5 C 0.25 11.95 5.02 85.64 0.43 12.38 16 6 C -0.53 -26.93 8.39 25.60 0.21 -26.71 16 7 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 8 C 0.03 1.32 5.46 84.65 0.46 1.78 16 9 N -0.92 -49.85 13.29 21.45 0.28 -49.56 16 10 Si 0.95 41.42 29.54 68.60 2.03 43.45 16 11 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 12 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 13 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 14 C 0.53 21.90 6.26 87.66 0.55 22.45 16 15 O -0.58 -25.14 11.98 -3.04 -0.04 -25.18 16 16 C -0.12 -4.64 2.57 -10.36 -0.03 -4.66 16 17 H 0.09 3.39 6.18 -2.39 -0.01 3.38 16 18 C -0.10 -3.75 6.47 31.98 0.21 -3.55 16 19 C 0.05 1.62 5.39 86.77 0.47 2.09 16 20 N -0.53 -15.48 5.03 -860.39 -4.33 -19.81 16 21 C 0.08 1.92 1.53 44.91 0.07 1.99 16 22 C -0.11 -2.24 5.09 30.59 0.16 -2.08 16 23 C -0.12 -1.92 5.92 30.59 0.18 -1.74 16 24 C -0.12 -1.76 5.92 30.59 0.18 -1.58 16 25 C -0.12 -1.97 5.92 30.61 0.18 -1.79 16 26 C -0.11 -2.40 5.07 30.61 0.16 -2.24 16 27 C 0.07 2.23 5.69 86.65 0.49 2.72 16 28 H 0.06 2.29 6.25 -2.39 -0.01 2.28 16 29 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 2.98 7.79 -2.39 -0.02 2.96 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 33 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.06 1.98 6.50 -2.39 -0.02 1.97 16 35 H 0.02 0.84 7.92 -2.39 -0.02 0.82 16 36 H 0.03 1.39 5.80 -2.39 -0.01 1.37 16 37 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 38 H 0.06 2.31 8.04 -2.39 -0.02 2.29 16 39 H 0.08 3.17 7.16 -2.39 -0.02 3.16 16 40 H 0.05 1.47 7.58 -2.39 -0.02 1.45 16 41 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 42 H 0.03 0.80 8.10 -2.39 -0.02 0.79 16 43 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.06 1.26 7.03 -2.39 -0.02 1.24 16 45 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 46 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 48 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 49 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 50 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 51 H 0.05 1.27 6.50 -2.39 -0.02 1.25 16 52 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 53 H 0.08 2.87 6.77 -2.39 -0.02 2.85 16 54 H 0.06 1.85 6.35 -2.39 -0.02 1.83 16 Total: -1.00 -56.56 399.52 2.02 -54.54 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: 0.84 Total: 28.29 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: 5.17 Total: -4.68 kcal Atomic # 7 Polarization: -90.45 SS G_CDS: -5.97 Total: -96.42 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.04 Total: -25.18 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -56.56 2.02 -54.54 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531391927.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.842 kcal (2) G-P(sol) polarization free energy of solvation -56.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds