Wall clock time and date at job start Tue Mar 31 2020 15:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47074 * 2 1 4 4 C 1.53000 * 109.47129 * 239.99485 * 2 1 3 5 5 C 1.52997 * 109.46828 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47166 * 60.00274 * 5 4 2 7 7 C 1.53000 * 109.47024 * 299.99606 * 6 5 4 8 8 C 1.52997 * 109.46828 * 60.00186 * 7 6 5 9 9 H 1.08997 * 109.47218 * 60.00370 * 8 7 6 10 10 C 1.53000 * 109.46828 * 179.97438 * 8 7 6 11 11 C 1.50703 * 109.47332 * 294.99839 * 10 8 7 12 12 O 1.21283 * 119.99828 * 359.97438 * 11 10 8 13 13 N 1.34772 * 120.00304 * 180.02562 * 11 10 8 14 14 C 1.46503 * 119.99984 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47012 * 179.97438 * 14 13 11 16 16 C 1.53035 * 109.46200 * 295.06834 * 15 14 13 17 17 C 1.53192 * 109.31414 * 178.61228 * 16 15 14 18 18 N 1.46934 * 108.77284 * 54.63446 * 17 16 15 19 19 C 1.36939 * 120.62901 * 126.41574 * 18 17 16 20 20 H 1.08000 * 119.99534 * 332.60329 * 19 18 17 21 21 C 1.38809 * 120.00255 * 152.60894 * 19 18 17 22 22 N 1.31617 * 120.00472 * 159.33983 * 21 19 18 23 23 Si 1.86807 * 119.99535 * 339.34062 * 21 19 18 24 24 H 1.48497 * 109.47055 * 92.94395 * 23 21 19 25 25 H 1.48503 * 109.46873 * 212.94066 * 23 21 19 26 26 H 1.48497 * 109.47220 * 332.94138 * 23 21 19 27 27 C 1.46921 * 118.73750 * 306.39100 * 18 17 16 28 28 C 1.53035 * 109.45926 * 174.99479 * 15 14 13 29 29 H 1.09000 * 109.47104 * 299.99976 * 1 2 3 30 30 H 1.08993 * 109.46763 * 60.00529 * 1 2 3 31 31 H 1.08998 * 109.46722 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46919 * 299.99828 * 4 2 1 33 33 H 1.08990 * 109.46816 * 60.00170 * 4 2 1 34 34 H 1.08999 * 109.47135 * 180.02562 * 5 4 2 35 35 H 1.08994 * 109.47570 * 300.00016 * 5 4 2 36 36 H 1.08998 * 109.47431 * 60.00105 * 6 5 4 37 37 H 1.09000 * 109.47042 * 179.97438 * 6 5 4 38 38 H 1.08994 * 109.47058 * 299.99857 * 7 6 5 39 39 H 1.09002 * 109.47219 * 179.97438 * 7 6 5 40 40 H 1.09002 * 109.47491 * 54.99862 * 10 8 7 41 41 H 1.08999 * 109.47101 * 175.00144 * 10 8 7 42 42 H 0.97004 * 120.00263 * 359.97438 * 13 11 10 43 43 H 1.09001 * 109.47004 * 299.99444 * 14 13 11 44 44 H 1.08999 * 109.47103 * 59.99861 * 14 13 11 45 45 H 1.09005 * 109.46080 * 55.02719 * 15 14 13 46 46 H 1.09000 * 109.49996 * 298.56298 * 16 15 14 47 47 H 1.09000 * 109.49759 * 58.66446 * 16 15 14 48 48 H 1.08998 * 109.58710 * 294.84591 * 17 16 15 49 49 H 1.08999 * 109.58831 * 174.42156 * 17 16 15 50 50 H 0.96999 * 120.00191 * 179.97438 * 22 21 19 51 51 H 1.08997 * 109.58835 * 293.81963 * 27 18 17 52 52 H 1.09004 * 109.70278 * 173.47103 * 27 18 17 53 53 H 1.08991 * 109.50160 * 301.33743 * 28 15 14 54 54 H 1.09004 * 109.49824 * 61.43896 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5700 -0.7219 -1.2488 6 6 4.0795 -1.4434 0.0005 7 6 3.5695 -0.7221 1.2497 8 6 2.0395 -0.7216 1.2493 9 1 1.6758 -1.7491 1.2492 10 6 1.5295 -0.0008 2.4988 11 6 1.9276 -0.7798 3.7259 12 8 2.5568 -1.8104 3.6122 13 7 1.5835 -0.3319 4.9496 14 6 1.9710 -1.0890 6.1424 15 6 1.4609 -0.3683 7.3919 16 6 2.1641 0.9846 7.5230 17 6 1.6258 1.7181 8.7555 18 7 1.7742 0.8448 9.9278 19 6 2.4226 1.2873 11.0498 20 1 3.1861 2.0467 10.9680 21 6 2.0986 0.7597 12.2922 22 7 2.9507 0.8560 13.2907 23 14 0.4530 -0.0869 12.5469 24 1 0.6053 -1.5454 12.3134 25 1 -0.0133 0.1457 13.9376 26 1 -0.5412 0.4661 11.5925 27 6 1.2132 -0.5120 9.8734 28 6 1.7560 -1.2205 8.6283 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6767 -1.7490 -1.2490 33 1 1.6767 -0.2076 -2.1391 34 1 3.9334 -1.2354 -2.1389 35 1 3.9337 0.3056 -1.2486 36 1 3.7158 -2.4710 0.0004 37 1 5.1695 -1.4442 0.0006 38 1 3.9332 0.3054 1.2499 39 1 3.9320 -1.2364 2.1398 40 1 1.9645 0.9976 2.5454 41 1 0.4432 0.0779 2.4550 42 1 1.0799 0.4921 5.0405 43 1 1.5367 -2.0877 6.0959 44 1 3.0573 -1.1669 6.1863 45 1 0.3855 -0.2117 7.3072 46 1 3.2371 0.8278 7.6328 47 1 1.9725 1.5820 6.6316 48 1 0.5724 1.9560 8.6080 49 1 2.1918 2.6367 8.9102 50 1 2.7241 0.4876 14.1589 51 1 0.1262 -0.4560 9.8171 52 1 1.5048 -1.0663 10.7655 53 1 1.2741 -2.1925 8.5237 54 1 2.8330 -1.3567 8.7277 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531538040.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:08 Heat of formation + Delta-G solvation = -77.149062 kcal Electronic energy + Delta-G solvation = -28026.463412 eV Core-core repulsion = 24381.982484 eV Total energy + Delta-G solvation = -3644.480928 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.17758 -39.87555 -39.11920 -36.44427 -34.51999 -34.00013 -32.99181 -32.70354 -31.87488 -29.34862 -27.97693 -26.70350 -25.42131 -24.28701 -23.17442 -22.65216 -21.93173 -21.22856 -20.72972 -20.53572 -18.79067 -17.92631 -17.29727 -16.81048 -16.58442 -15.93780 -15.88684 -15.53905 -15.33785 -15.26391 -15.15485 -14.97678 -14.87772 -14.48346 -14.42775 -14.03130 -13.74718 -13.62120 -13.43230 -13.26110 -13.00029 -12.90047 -12.63895 -12.55149 -12.40610 -12.29188 -12.24804 -12.11979 -11.83044 -11.73489 -11.68470 -11.58930 -11.30990 -11.27176 -11.19693 -11.10848 -10.79296 -10.69105 -10.46570 -9.98374 -8.91768 -8.16442 -5.47555 1.30210 1.40853 1.50356 1.74922 2.30060 2.41941 3.06046 3.37904 3.72221 3.75036 3.80285 3.84626 3.88024 3.96392 4.07852 4.19890 4.30787 4.38170 4.43526 4.45652 4.52277 4.55089 4.59793 4.63679 4.65179 4.72264 4.75391 4.77452 4.80558 4.87901 4.89695 4.92562 5.01194 5.02769 5.10795 5.11550 5.17299 5.21765 5.23990 5.25568 5.27928 5.32374 5.34861 5.42020 5.46665 5.54043 5.58854 5.63725 5.69910 5.87747 6.13029 6.65954 6.93685 7.37015 7.64394 8.04312 9.03602 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.031929 B = 0.002129 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.740914 B =13147.253622 C =13308.581284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.082 4.082 3 H 0.079 0.921 4 C -0.113 4.113 5 C -0.117 4.117 6 C -0.118 4.118 7 C -0.120 4.120 8 C -0.060 4.060 9 H 0.054 0.946 10 C -0.134 4.134 11 C 0.505 3.495 12 O -0.583 6.583 13 N -0.719 5.719 14 C 0.136 3.864 15 C -0.079 4.079 16 C -0.117 4.117 17 C 0.141 3.859 18 N -0.622 5.622 19 C -0.247 4.247 20 H 0.049 0.951 21 C -0.041 4.041 22 N -0.959 5.959 23 Si 0.950 3.050 24 H -0.276 1.276 25 H -0.313 1.313 26 H -0.257 1.257 27 C 0.120 3.880 28 C -0.121 4.121 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.048 0.952 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.051 0.949 40 H 0.113 0.887 41 H 0.118 0.882 42 H 0.414 0.586 43 H 0.061 0.939 44 H 0.048 0.952 45 H 0.090 0.910 46 H 0.043 0.957 47 H 0.091 0.909 48 H 0.042 0.958 49 H 0.051 0.949 50 H 0.261 0.739 51 H 0.038 0.962 52 H 0.045 0.955 53 H 0.080 0.920 54 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.915 -1.032 -31.855 32.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.101 4.101 3 H 0.097 0.903 4 C -0.151 4.151 5 C -0.154 4.154 6 C -0.156 4.156 7 C -0.157 4.157 8 C -0.079 4.079 9 H 0.073 0.927 10 C -0.174 4.174 11 C 0.294 3.706 12 O -0.463 6.463 13 N -0.371 5.371 14 C 0.011 3.989 15 C -0.098 4.098 16 C -0.156 4.156 17 C 0.017 3.983 18 N -0.347 5.347 19 C -0.377 4.377 20 H 0.067 0.933 21 C -0.235 4.235 22 N -0.606 5.606 23 Si 0.779 3.221 24 H -0.203 1.203 25 H -0.242 1.242 26 H -0.181 1.181 27 C -0.005 4.005 28 C -0.161 4.161 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.131 0.869 41 H 0.136 0.864 42 H 0.252 0.748 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.108 0.892 46 H 0.062 0.938 47 H 0.110 0.890 48 H 0.060 0.940 49 H 0.070 0.930 50 H 0.069 0.931 51 H 0.055 0.945 52 H 0.063 0.937 53 H 0.098 0.902 54 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.447 -1.765 -31.790 32.485 hybrid contribution -0.288 -0.228 1.297 1.348 sum -6.735 -1.993 -30.493 31.291 Atomic orbital electron populations 1.21926 0.94530 1.01797 1.02587 1.21141 0.95943 0.99618 0.93379 0.90250 1.21583 0.95212 1.00476 0.97799 1.21531 0.95993 1.00784 0.97138 1.21494 0.99963 0.99052 0.95071 1.21661 0.95603 1.00412 0.98029 1.20860 0.95099 0.98870 0.93079 0.92708 1.21895 1.04539 1.00403 0.90537 1.21359 0.78263 0.85435 0.85582 1.90666 1.41673 1.26728 1.87227 1.46015 1.57678 1.28210 1.05236 1.21192 0.99129 0.94932 0.83613 1.21168 1.01053 0.95067 0.92469 1.21946 0.99347 0.96055 0.98256 1.21146 0.98540 0.92752 0.85885 1.44514 1.66444 1.10319 1.13434 1.18868 1.12744 1.20875 0.85199 0.93331 1.25958 1.01110 1.01135 0.95293 1.69980 1.36313 1.50968 1.03325 0.85855 0.82293 0.78355 0.75587 1.20300 1.24180 1.18139 1.21380 0.96085 0.85614 0.97379 1.21891 1.01017 0.98699 0.94494 0.91419 0.91892 0.93339 0.92790 0.90881 0.91739 0.91547 0.93291 0.92448 0.91937 0.92989 0.86858 0.86369 0.74842 0.92085 0.93355 0.89180 0.93790 0.89034 0.94020 0.92994 0.93052 0.94463 0.93695 0.90151 0.93175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.85 71.98 0.64 -0.70 16 2 C -0.08 -0.89 2.25 -10.79 -0.02 -0.91 16 3 H 0.08 0.75 8.14 -2.39 -0.02 0.74 16 4 C -0.11 -1.28 5.20 30.59 0.16 -1.12 16 5 C -0.12 -1.45 5.92 30.59 0.18 -1.26 16 6 C -0.12 -1.95 5.92 30.60 0.18 -1.77 16 7 C -0.12 -2.18 4.95 30.59 0.15 -2.03 16 8 C -0.06 -0.92 1.36 -10.79 -0.01 -0.94 16 9 H 0.05 1.10 7.95 -2.39 -0.02 1.08 16 10 C -0.13 -1.73 4.96 29.85 0.15 -1.58 16 11 C 0.51 10.55 7.55 87.66 0.66 11.22 16 12 O -0.58 -17.46 13.97 -3.04 -0.04 -17.50 16 13 N -0.72 -13.18 5.27 -463.05 -2.44 -15.62 16 14 C 0.14 3.19 5.06 86.38 0.44 3.62 16 15 C -0.08 -1.98 2.19 -10.77 -0.02 -2.00 16 16 C -0.12 -3.19 5.25 30.67 0.16 -3.03 16 17 C 0.14 5.00 6.52 86.36 0.56 5.57 16 18 N -0.62 -28.52 2.77 -699.09 -1.94 -30.46 16 19 C -0.25 -14.04 10.04 84.03 0.84 -13.20 16 20 H 0.05 3.03 8.06 -2.91 -0.02 3.01 16 21 C -0.04 -2.39 5.23 84.86 0.44 -1.95 16 22 N -0.96 -61.00 13.97 21.65 0.30 -60.70 16 23 Si 0.95 46.58 24.35 68.60 1.67 48.25 16 24 H -0.28 -12.84 6.62 99.48 0.66 -12.18 16 25 H -0.31 -15.65 7.11 99.48 0.71 -14.95 16 26 H -0.26 -11.84 6.63 99.48 0.66 -11.18 16 27 C 0.12 4.92 4.20 86.36 0.36 5.28 16 28 C -0.12 -3.88 5.36 30.67 0.16 -3.72 16 29 H 0.07 0.47 6.32 -2.39 -0.02 0.45 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.05 0.69 8.14 -2.39 -0.02 0.68 16 33 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.05 1.29 5.95 -2.39 -0.01 1.28 16 40 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.12 1.00 6.17 -2.39 -0.01 0.99 16 42 H 0.41 5.12 7.65 -92.71 -0.71 4.42 16 43 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 46 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.09 1.79 7.15 -2.39 -0.02 1.77 16 48 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.05 1.92 7.93 -2.39 -0.02 1.90 16 50 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 51 H 0.04 1.44 7.07 -2.39 -0.02 1.42 16 52 H 0.04 2.09 4.50 -2.38 -0.01 2.07 16 53 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 54 H 0.05 1.77 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -72.51 395.10 2.63 -69.88 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.05 Total: 14.66 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: 5.03 Total: -8.52 kcal Atomic # 7 Polarization: -102.70 SS G_CDS: -4.07 Total: -106.77 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.04 Total: -17.50 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.67 Total: 48.25 kcal Total: -72.51 2.63 -69.88 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531538040.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.274 kcal (2) G-P(sol) polarization free energy of solvation -72.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds