Wall clock time and date at job start Tue Mar 31 2020 15:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46670 * 2 1 4 4 C 1.52998 * 109.46862 * 240.00517 * 2 1 3 5 5 C 1.53005 * 109.46862 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.47114 * 59.99831 * 5 4 2 7 7 C 1.53005 * 109.46833 * 300.00070 * 6 5 4 8 8 C 1.52992 * 109.46719 * 120.00077 * 2 1 3 9 9 H 1.09000 * 109.47613 * 60.00500 * 8 2 1 10 10 N 1.46494 * 109.47608 * 300.00007 * 8 2 1 11 11 C 1.46507 * 120.00123 * 300.00086 * 10 8 2 12 12 C 1.34777 * 120.00243 * 120.00202 * 10 8 2 13 13 O 1.21280 * 119.99841 * 0.02562 * 12 10 8 14 14 C 1.50695 * 119.99957 * 180.02562 * 12 10 8 15 15 N 1.46907 * 109.47096 * 180.02562 * 14 12 10 16 16 C 1.46843 * 111.00282 * 170.00091 * 15 14 12 17 17 C 1.53034 * 109.52507 * 185.83914 * 16 15 14 18 18 C 1.53119 * 109.27553 * 300.81792 * 17 16 15 19 19 C 1.50701 * 109.52361 * 177.55751 * 18 17 16 20 20 H 1.08001 * 119.99608 * 354.45029 * 19 18 17 21 21 C 1.37881 * 120.00287 * 174.44429 * 19 18 17 22 22 N 1.31513 * 120.00078 * 162.12113 * 21 19 18 23 23 Si 1.86802 * 119.99812 * 342.12015 * 21 19 18 24 24 H 1.48493 * 109.47054 * 179.97438 * 23 21 19 25 25 H 1.48505 * 109.46818 * 60.00046 * 23 21 19 26 26 H 1.48492 * 109.47352 * 300.00270 * 23 21 19 27 27 C 1.53122 * 109.15999 * 57.65427 * 18 17 16 28 28 C 1.46852 * 110.99763 * 294.20939 * 15 14 12 29 29 H 1.09002 * 109.47236 * 299.99911 * 1 2 3 30 30 H 1.09005 * 109.47190 * 59.99463 * 1 2 3 31 31 H 1.08997 * 109.47158 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47365 * 59.99738 * 4 2 1 33 33 H 1.09005 * 109.47136 * 299.99712 * 4 2 1 34 34 H 1.08997 * 109.47158 * 300.00052 * 5 4 2 35 35 H 1.08992 * 109.47068 * 179.97438 * 5 4 2 36 36 H 1.08991 * 109.46956 * 180.02562 * 6 5 4 37 37 H 1.08995 * 109.47056 * 59.99545 * 6 5 4 38 38 H 1.08997 * 109.47371 * 299.99738 * 7 6 5 39 39 H 1.09005 * 109.46641 * 179.97438 * 7 6 5 40 40 H 1.08998 * 109.47260 * 270.00366 * 11 10 8 41 41 H 1.09003 * 109.46448 * 29.99693 * 11 10 8 42 42 H 1.08999 * 109.46926 * 149.99488 * 11 10 8 43 43 H 1.08998 * 109.47790 * 60.00104 * 14 12 10 44 44 H 1.09000 * 109.47278 * 299.99557 * 14 12 10 45 45 H 1.09003 * 109.46423 * 65.82206 * 16 15 14 46 46 H 1.09005 * 109.45139 * 305.85213 * 16 15 14 47 47 H 1.09005 * 109.50536 * 180.87867 * 17 16 15 48 48 H 1.08994 * 109.50670 * 60.75783 * 17 16 15 49 49 H 1.09002 * 109.52472 * 297.68621 * 18 17 16 50 50 H 0.97001 * 119.99633 * 354.67323 * 22 21 19 51 51 H 1.08997 * 109.50139 * 62.29105 * 27 18 17 52 52 H 1.09002 * 109.49954 * 182.40302 * 27 18 17 53 53 H 1.09002 * 109.46060 * 294.17482 * 28 15 14 54 54 H 1.09000 * 109.45856 * 54.14180 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5700 -0.7217 -1.2490 6 6 4.0795 -1.4434 0.0002 7 6 3.5694 -0.7222 1.2495 8 6 2.0399 -0.7212 1.2492 9 1 1.6767 -1.7489 1.2492 10 7 1.5516 -0.0307 2.4454 11 6 1.9056 1.3719 2.6773 12 6 0.7768 -0.6858 3.3325 13 8 0.4841 -1.8470 3.1408 14 6 0.2740 0.0248 4.5627 15 7 -0.5415 -0.8988 5.3627 16 6 -0.8521 -0.3230 6.6773 17 6 -1.5750 -1.3647 7.5342 18 6 -2.8634 -1.7946 6.8273 19 6 -3.5495 -2.8642 7.6374 20 1 -3.0685 -3.2681 8.5160 21 6 -4.7913 -3.3273 7.2569 22 7 -5.2377 -4.4725 7.7246 23 14 -5.8395 -2.3278 6.0772 24 1 -7.1193 -3.0386 5.8285 25 1 -5.1124 -2.1549 4.7939 26 1 -6.1196 -0.9958 6.6707 27 6 -2.5164 -2.3458 5.4415 28 6 -1.7663 -1.2757 4.6454 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6766 -0.2073 -2.1392 33 1 1.6766 -1.7489 -1.2494 34 1 3.9337 0.3058 -1.2487 35 1 3.9333 -1.2358 -2.1387 36 1 5.1694 -1.4434 0.0007 37 1 3.7157 -2.4709 0.0000 38 1 3.9331 0.3053 1.2499 39 1 3.9321 -1.2366 2.1395 40 1 2.8324 1.4230 3.2486 41 1 2.0405 1.8755 1.7201 42 1 1.1071 1.8605 3.2357 43 1 -0.3317 0.8809 4.2658 44 1 1.1216 0.3676 5.1562 45 1 -1.4925 0.5498 6.5495 46 1 0.0731 -0.0254 7.1710 47 1 -1.8192 -0.9320 8.5044 48 1 -0.9299 -2.2321 7.6740 49 1 -3.5259 -0.9353 6.7231 50 1 -4.6640 -5.0283 8.2750 51 1 -1.8862 -3.2286 5.5484 52 1 -3.4333 -2.6140 4.9166 53 1 -2.4024 -0.3984 4.5271 54 1 -1.5052 -1.6699 3.6633 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541024757.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:32 Heat of formation + Delta-G solvation = -73.290226 kcal Electronic energy + Delta-G solvation = -29165.521414 eV Core-core repulsion = 25521.207817 eV Total energy + Delta-G solvation = -3644.313596 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.51954 -40.01618 -38.83909 -36.01126 -35.74107 -33.69020 -33.44622 -31.66883 -31.24519 -29.06166 -27.85399 -27.17720 -26.05531 -24.01328 -23.53914 -22.77985 -22.18677 -20.64479 -20.43585 -20.04337 -19.66208 -18.05769 -17.34252 -16.78253 -16.65830 -15.80920 -15.72454 -15.58485 -15.45590 -15.26248 -15.12976 -14.94129 -14.67210 -14.34567 -14.22719 -13.84888 -13.75847 -13.61757 -13.48803 -13.32806 -13.12309 -13.02875 -12.85790 -12.82934 -12.50210 -12.32197 -12.19286 -12.08569 -11.99308 -11.81530 -11.66054 -11.42215 -11.37578 -11.26704 -11.17200 -11.05333 -10.84546 -10.47172 -10.43967 -9.51788 -9.18312 -8.71204 -6.34296 1.42932 1.50506 1.68696 1.70335 1.95652 2.50066 3.00556 3.05020 3.53275 3.75509 3.78492 3.92369 4.07239 4.15405 4.16898 4.18841 4.19285 4.28910 4.34515 4.39942 4.47776 4.49119 4.50815 4.52744 4.55217 4.65137 4.72521 4.76653 4.78122 4.80794 4.82907 4.93909 4.94894 4.99093 4.99480 5.06306 5.12686 5.16798 5.18092 5.24135 5.28268 5.31663 5.33498 5.40322 5.52288 5.54376 5.67967 5.73813 6.02974 6.10479 6.17071 6.18704 6.49241 6.59202 7.30527 7.41913 8.63442 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.020598 B = 0.002916 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.061537 B = 9600.821707 C =10100.968778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 H 0.094 0.906 4 C -0.113 4.113 5 C -0.114 4.114 6 C -0.118 4.118 7 C -0.118 4.118 8 C 0.143 3.857 9 H 0.060 0.940 10 N -0.608 5.608 11 C 0.067 3.933 12 C 0.507 3.493 13 O -0.569 6.569 14 C 0.042 3.958 15 N -0.542 5.542 16 C 0.069 3.931 17 C -0.095 4.095 18 C 0.018 3.982 19 C -0.599 4.599 20 H 0.013 0.987 21 C -0.023 4.023 22 N -0.943 5.943 23 Si 1.082 2.918 24 H -0.290 1.290 25 H -0.248 1.248 26 H -0.259 1.259 27 C -0.108 4.108 28 C 0.067 3.933 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.029 0.971 32 H 0.078 0.922 33 H 0.047 0.953 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.047 0.953 38 H 0.086 0.914 39 H 0.048 0.952 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.128 0.872 45 H 0.046 0.954 46 H 0.096 0.904 47 H 0.060 0.940 48 H 0.035 0.965 49 H 0.025 0.975 50 H 0.250 0.750 51 H 0.027 0.973 52 H 0.047 0.953 53 H 0.033 0.967 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.112 19.958 -19.767 35.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 H 0.112 0.888 4 C -0.151 4.151 5 C -0.152 4.152 6 C -0.156 4.156 7 C -0.156 4.156 8 C 0.039 3.961 9 H 0.078 0.922 10 N -0.341 5.341 11 C -0.075 4.075 12 C 0.296 3.704 13 O -0.448 6.448 14 C -0.089 4.089 15 N -0.268 5.268 16 C -0.058 4.058 17 C -0.133 4.133 18 C -0.001 4.001 19 C -0.637 4.637 20 H 0.032 0.968 21 C -0.220 4.220 22 N -0.579 5.579 23 Si 0.903 3.097 24 H -0.217 1.217 25 H -0.173 1.173 26 H -0.184 1.184 27 C -0.146 4.146 28 C -0.061 4.061 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.096 0.904 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.105 0.895 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.146 0.854 45 H 0.064 0.936 46 H 0.114 0.886 47 H 0.079 0.921 48 H 0.053 0.947 49 H 0.043 0.957 50 H 0.059 0.941 51 H 0.046 0.954 52 H 0.065 0.935 53 H 0.051 0.949 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 19.768 18.986 -20.488 34.220 hybrid contribution 0.703 -0.679 1.385 1.696 sum 20.471 18.307 -19.102 33.453 Atomic orbital electron populations 1.21745 0.95861 1.00626 1.01675 1.21409 0.95073 1.00646 0.93726 0.88770 1.21583 0.96314 1.00090 0.97086 1.21532 0.94613 1.01533 0.97506 1.21516 1.01050 0.98836 0.94195 1.21795 0.93385 1.02214 0.98240 1.21096 0.94469 0.96459 0.84052 0.92211 1.47962 1.50370 1.13677 1.22089 1.22086 1.02106 0.79472 1.03807 1.21011 0.78023 0.86672 0.84702 1.90687 1.58247 1.19048 1.76780 1.22081 0.99710 0.93899 0.93166 1.61487 1.19466 1.42215 1.03619 1.22113 1.00122 0.95168 0.88437 1.21413 0.96083 0.97813 0.97971 1.19015 0.94082 0.94574 0.92471 1.22296 1.05469 1.23785 1.12167 0.96812 1.27261 0.98432 0.96432 0.99914 1.70960 1.40615 1.11201 1.35135 0.83624 0.74669 0.75378 0.76003 1.21675 1.17302 1.18358 1.21863 0.97924 0.97535 0.97318 1.22068 0.89526 0.97092 0.97377 0.93633 0.91249 0.95177 0.90355 0.93463 0.90397 0.91133 0.90420 0.93433 0.89533 0.93284 0.90994 0.89115 0.89798 0.89841 0.85376 0.93631 0.88570 0.92146 0.94652 0.95676 0.94114 0.95369 0.93486 0.94880 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.04 71.98 0.65 -1.89 16 2 C -0.09 -1.26 2.09 -10.80 -0.02 -1.29 16 3 H 0.09 0.93 6.66 -2.39 -0.02 0.92 16 4 C -0.11 -1.42 5.20 30.60 0.16 -1.26 16 5 C -0.11 -1.13 5.92 30.60 0.18 -0.95 16 6 C -0.12 -1.48 5.92 30.60 0.18 -1.30 16 7 C -0.12 -1.69 5.20 30.58 0.16 -1.53 16 8 C 0.14 2.67 1.96 44.97 0.09 2.76 16 9 H 0.06 1.65 6.90 -2.39 -0.02 1.63 16 10 N -0.61 -11.29 2.00 -822.70 -1.64 -12.94 16 11 C 0.07 0.60 9.30 127.77 1.19 1.79 16 12 C 0.51 13.82 7.35 87.66 0.64 14.46 16 13 O -0.57 -21.91 13.65 -3.03 -0.04 -21.95 16 14 C 0.04 0.97 4.00 85.55 0.34 1.32 16 15 N -0.54 -18.26 4.40 -900.93 -3.96 -22.22 16 16 C 0.07 2.13 5.46 86.33 0.47 2.61 16 17 C -0.09 -3.96 5.32 30.65 0.16 -3.80 16 18 C 0.02 0.87 1.74 -11.46 -0.02 0.85 16 19 C -0.60 -36.22 8.82 25.60 0.23 -35.99 16 20 H 0.01 0.90 7.99 -2.91 -0.02 0.88 16 21 C -0.02 -1.43 5.34 84.66 0.45 -0.98 16 22 N -0.94 -62.42 13.70 21.45 0.29 -62.13 16 23 Si 1.08 52.52 26.41 68.60 1.81 54.33 16 24 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 25 H -0.25 -10.98 5.57 99.48 0.55 -10.43 16 26 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 27 C -0.11 -5.20 5.06 30.64 0.16 -5.04 16 28 C 0.07 2.60 5.11 86.32 0.44 3.04 16 29 H 0.04 0.88 7.60 -2.39 -0.02 0.86 16 30 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.09 0.85 7.67 -2.39 -0.02 0.84 16 39 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 40 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.09 0.50 6.43 -2.39 -0.02 0.49 16 42 H 0.08 0.59 6.44 -2.39 -0.02 0.57 16 43 H 0.08 1.54 7.38 -2.39 -0.02 1.52 16 44 H 0.13 2.20 7.95 -2.39 -0.02 2.18 16 45 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.10 2.38 8.01 -2.38 -0.02 2.36 16 47 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 48 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.03 1.20 6.79 -2.39 -0.02 1.18 16 50 H 0.25 16.85 8.73 -92.71 -0.81 16.04 16 51 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 52 H 0.05 2.33 4.87 -2.39 -0.01 2.32 16 53 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 54 H 0.07 2.89 5.78 -2.39 -0.01 2.88 16 Total: -1.00 -79.61 394.13 2.57 -77.04 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.65 Total: 15.06 kcal Atomic # 6 Polarization: -32.65 SS G_CDS: 5.46 Total: -27.19 kcal Atomic # 7 Polarization: -91.98 SS G_CDS: -5.31 Total: -97.29 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.04 Total: -21.95 kcal Atomic # 14 Polarization: 52.52 SS G_CDS: 1.81 Total: 54.33 kcal Total: -79.61 2.57 -77.04 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541024757.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.753 kcal (2) G-P(sol) polarization free energy of solvation -79.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds