Wall clock time and date at job start Tue Mar 31 2020 15:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47405 * 2 1 4 4 C 1.53002 * 109.47270 * 239.99776 * 2 1 3 5 5 C 1.52994 * 109.47270 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.47215 * 60.00528 * 5 4 2 7 7 C 1.53002 * 109.46570 * 299.99901 * 6 5 4 8 8 C 1.52994 * 109.47270 * 60.00133 * 7 6 5 9 9 H 1.09001 * 109.47285 * 179.97438 * 8 7 6 10 10 N 1.46494 * 109.47419 * 59.99663 * 8 7 6 11 11 C 1.46498 * 120.00071 * 244.90455 * 10 8 7 12 12 C 1.34783 * 119.99950 * 64.90626 * 10 8 7 13 13 O 1.21274 * 119.99666 * 0.02562 * 12 10 8 14 14 C 1.50696 * 119.99711 * 179.97438 * 12 10 8 15 15 N 1.46904 * 109.46682 * 173.92965 * 14 12 10 16 16 C 1.46851 * 110.99828 * 168.74828 * 15 14 12 17 17 C 1.53036 * 109.52144 * 185.83736 * 16 15 14 18 18 C 1.53120 * 109.28233 * 300.81998 * 17 16 15 19 19 C 1.50699 * 109.52647 * 177.55996 * 18 17 16 20 20 H 1.07993 * 119.99907 * 240.31756 * 19 18 17 21 21 C 1.37881 * 119.99676 * 60.31386 * 19 18 17 22 22 N 1.31506 * 120.00251 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99494 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47135 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.46890 * 120.00449 * 23 21 19 26 26 H 1.48496 * 109.46870 * 240.00085 * 23 21 19 27 27 C 1.53116 * 109.15827 * 57.65100 * 18 17 16 28 28 C 1.46846 * 110.99855 * 292.95215 * 15 14 12 29 29 H 1.09000 * 109.47145 * 329.87912 * 1 2 3 30 30 H 1.09006 * 109.47114 * 89.86950 * 1 2 3 31 31 H 1.08995 * 109.47238 * 209.87609 * 1 2 3 32 32 H 1.09001 * 109.47527 * 300.00647 * 4 2 1 33 33 H 1.09007 * 109.47032 * 60.00255 * 4 2 1 34 34 H 1.09001 * 109.47285 * 180.02562 * 5 4 2 35 35 H 1.08997 * 109.47405 * 300.00224 * 5 4 2 36 36 H 1.08997 * 109.47182 * 59.99560 * 6 5 4 37 37 H 1.08998 * 109.47085 * 179.97438 * 6 5 4 38 38 H 1.08997 * 109.47090 * 299.99716 * 7 6 5 39 39 H 1.09001 * 109.46639 * 179.97438 * 7 6 5 40 40 H 1.09000 * 109.46891 * 92.85486 * 11 10 8 41 41 H 1.09006 * 109.47062 * 212.85127 * 11 10 8 42 42 H 1.08995 * 109.47745 * 332.85531 * 11 10 8 43 43 H 1.09001 * 109.47747 * 293.92790 * 14 12 10 44 44 H 1.09005 * 109.47192 * 53.93295 * 14 12 10 45 45 H 1.08996 * 109.46130 * 305.84985 * 16 15 14 46 46 H 1.08996 * 109.46361 * 65.82246 * 16 15 14 47 47 H 1.09004 * 109.50709 * 180.87436 * 17 16 15 48 48 H 1.09008 * 109.50426 * 60.75869 * 17 16 15 49 49 H 1.09007 * 109.52026 * 297.75272 * 18 17 16 50 50 H 0.97001 * 120.00367 * 179.97438 * 22 21 19 51 51 H 1.09001 * 109.50427 * 182.40910 * 27 18 17 52 52 H 1.08993 * 109.53668 * 62.31440 * 27 18 17 53 53 H 1.08996 * 109.46523 * 294.17536 * 28 15 14 54 54 H 1.09005 * 109.46042 * 54.14841 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5699 -0.7207 -1.2495 6 6 4.0805 -1.4417 -0.0003 7 6 3.5704 -0.7204 1.2489 8 6 2.0405 -0.7210 1.2492 9 1 1.6771 -0.2075 2.1394 10 7 1.5526 -2.1023 1.2495 11 6 0.8011 -2.6139 0.1008 12 6 1.7952 -2.9024 2.3066 13 8 2.4169 -2.4787 3.2578 14 6 1.2928 -4.3232 2.3071 15 7 1.8059 -5.0235 3.4922 16 6 1.1325 -6.3160 3.6723 17 6 1.5849 -6.9492 4.9900 18 6 3.1036 -7.1433 4.9625 19 6 3.5627 -7.7111 6.2807 20 1 4.2659 -7.1624 6.8894 21 6 3.0849 -8.9313 6.7095 22 7 2.2289 -9.5998 5.9680 23 14 3.6535 -9.6349 8.3439 24 1 4.6100 -8.6949 8.9815 25 1 2.4811 -9.8275 9.2346 26 1 4.3211 -10.9415 8.1149 27 6 3.7789 -5.7897 4.7253 28 6 3.2628 -5.1901 3.4152 29 1 -0.3633 0.8889 0.5157 30 1 -0.3634 0.0023 -1.0277 31 1 -0.3633 -0.8910 0.5119 32 1 1.6766 -1.7490 -1.2493 33 1 1.6767 -0.2074 -2.1393 34 1 3.9333 -1.2342 -2.1397 35 1 3.9329 0.3070 -1.2498 36 1 3.7175 -2.4694 -0.0001 37 1 5.1705 -1.4417 -0.0008 38 1 3.9334 0.3074 1.2487 39 1 3.9338 -1.2343 2.1389 40 1 1.4865 -3.0958 -0.5964 41 1 0.0624 -3.3386 0.4435 42 1 0.2951 -1.7882 -0.3995 43 1 0.2030 -4.3233 2.3285 44 1 1.6386 -4.8312 1.4068 45 1 0.0535 -6.1634 3.6944 46 1 1.3887 -6.9774 2.8447 47 1 1.0968 -7.9156 5.1159 48 1 1.3167 -6.2946 5.8193 49 1 3.3687 -7.8286 4.1573 50 1 1.8930 -10.4584 6.2695 51 1 4.8583 -5.9276 4.6620 52 1 3.5459 -5.1166 5.5503 53 1 3.5090 -5.8568 2.5889 54 1 3.7311 -4.2196 3.2507 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541024760.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:43 Heat of formation + Delta-G solvation = -26.991846 kcal Electronic energy + Delta-G solvation = -29497.360734 eV Core-core repulsion = 25855.054787 eV Total energy + Delta-G solvation = -3642.305948 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.97799 -40.09921 -38.74145 -35.70221 -35.47210 -33.68381 -33.31097 -31.76330 -31.42737 -29.02870 -27.98092 -26.98050 -26.17408 -23.97372 -23.63157 -23.01729 -22.21513 -21.05376 -20.37803 -19.71168 -18.46938 -17.86169 -17.08897 -16.94490 -16.56418 -16.27053 -16.01084 -15.59080 -15.37011 -15.18708 -14.89556 -14.74819 -14.66537 -14.30639 -14.25083 -14.09862 -13.74111 -13.38239 -13.14843 -13.03387 -12.99826 -12.97544 -12.84081 -12.75586 -12.59330 -12.34764 -12.22452 -12.18806 -12.03815 -11.89463 -11.57934 -11.39710 -11.14722 -11.13017 -10.92592 -10.78887 -10.67341 -10.41539 -10.28982 -9.51705 -9.15619 -8.08434 -6.20995 1.39065 1.40829 1.52749 1.72027 1.99147 2.43798 3.05002 3.18115 3.54341 3.77247 3.82258 3.88703 4.14827 4.16225 4.19910 4.21482 4.28532 4.33796 4.39314 4.47998 4.48556 4.51911 4.54786 4.57370 4.60819 4.66882 4.73602 4.78723 4.81205 4.89907 4.91991 4.98432 5.05677 5.08019 5.10906 5.16538 5.18176 5.21113 5.30199 5.32038 5.35099 5.39174 5.42406 5.53823 5.54205 5.61817 5.80537 5.98344 6.00579 6.19199 6.28798 6.41842 6.52104 6.88600 7.33878 7.45994 8.96482 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.029363 B = 0.002671 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.348544 B =10482.117792 C =10829.514644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.089 4.089 3 H 0.089 0.911 4 C -0.148 4.148 5 C -0.113 4.113 6 C -0.112 4.112 7 C -0.134 4.134 8 C 0.157 3.843 9 H 0.054 0.946 10 N -0.601 5.601 11 C 0.030 3.970 12 C 0.511 3.489 13 O -0.560 6.560 14 C 0.039 3.961 15 N -0.535 5.535 16 C 0.071 3.929 17 C -0.095 4.095 18 C 0.047 3.953 19 C -0.535 4.535 20 H 0.044 0.956 21 C 0.014 3.986 22 N -0.914 5.914 23 Si 0.953 3.047 24 H -0.273 1.273 25 H -0.278 1.278 26 H -0.278 1.278 27 C -0.096 4.096 28 C 0.075 3.925 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.047 0.953 37 H 0.053 0.947 38 H 0.076 0.924 39 H 0.042 0.958 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.131 0.869 43 H 0.123 0.877 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.026 0.974 47 H 0.068 0.932 48 H 0.025 0.975 49 H -0.006 1.006 50 H 0.261 0.739 51 H 0.046 0.954 52 H 0.039 0.961 53 H 0.023 0.977 54 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.764 19.346 -20.977 29.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.108 4.108 3 H 0.107 0.893 4 C -0.185 4.185 5 C -0.150 4.150 6 C -0.150 4.150 7 C -0.172 4.172 8 C 0.054 3.946 9 H 0.072 0.928 10 N -0.335 5.335 11 C -0.110 4.110 12 C 0.299 3.701 13 O -0.438 6.438 14 C -0.092 4.092 15 N -0.260 5.260 16 C -0.056 4.056 17 C -0.134 4.134 18 C 0.029 3.971 19 C -0.573 4.573 20 H 0.063 0.937 21 C -0.184 4.184 22 N -0.554 5.554 23 Si 0.779 3.221 24 H -0.197 1.197 25 H -0.204 1.204 26 H -0.203 1.203 27 C -0.134 4.134 28 C -0.053 4.053 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.060 0.940 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.148 0.852 43 H 0.141 0.859 44 H 0.092 0.908 45 H 0.101 0.899 46 H 0.044 0.956 47 H 0.087 0.913 48 H 0.044 0.956 49 H 0.012 0.988 50 H 0.070 0.930 51 H 0.065 0.935 52 H 0.058 0.942 53 H 0.041 0.959 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.642 19.702 -20.077 28.689 hybrid contribution 0.838 -1.175 0.745 1.624 sum -4.803 18.527 -19.332 27.204 Atomic orbital electron populations 1.22258 0.93972 1.02551 1.03461 1.21341 0.96548 0.99765 0.93108 0.89278 1.22508 0.95305 1.03726 0.96937 1.21489 0.96415 1.00508 0.96635 1.21414 0.99680 0.99034 0.94865 1.21866 0.95766 1.01267 0.98320 1.20980 0.93413 0.81516 0.98720 0.92829 1.47870 1.55469 1.12090 1.18094 1.23166 0.96657 1.02531 0.88682 1.20809 0.79387 0.88074 0.81862 1.90670 1.41258 1.76004 1.35886 1.22084 1.02421 0.91427 0.93222 1.61557 1.04816 1.21288 1.38332 1.22086 0.98220 0.87832 0.97446 1.21423 0.98510 0.98979 0.94455 1.18642 0.92822 0.91061 0.94621 1.21577 1.25843 1.04186 1.05683 0.93740 1.25699 0.95174 0.97147 1.00381 1.69992 1.32029 1.14557 1.38828 0.85587 0.78230 0.78178 0.80149 1.19720 1.20378 1.20324 1.21491 0.98294 0.97358 0.96264 1.21944 0.87869 0.98973 0.96468 0.92593 0.89899 0.91188 0.88343 0.89996 0.91364 0.91819 0.93424 0.92840 0.90525 0.93954 0.91368 0.90422 0.85161 0.85927 0.90795 0.89900 0.95561 0.91349 0.95634 0.98832 0.92950 0.93481 0.94185 0.95935 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 8.07 71.98 0.58 -0.88 16 2 C -0.09 -1.02 2.46 -10.79 -0.03 -1.04 16 3 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 4 C -0.15 -1.38 4.58 30.59 0.14 -1.24 16 5 C -0.11 -1.38 5.92 30.59 0.18 -1.20 16 6 C -0.11 -2.06 5.77 30.60 0.18 -1.89 16 7 C -0.13 -2.90 5.31 30.59 0.16 -2.73 16 8 C 0.16 3.02 2.24 44.99 0.10 3.12 16 9 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 10 N -0.60 -11.99 2.00 -822.62 -1.64 -13.63 16 11 C 0.03 0.35 6.88 127.77 0.88 1.23 16 12 C 0.51 14.70 6.94 87.65 0.61 15.31 16 13 O -0.56 -21.59 13.21 -3.01 -0.04 -21.63 16 14 C 0.04 1.06 3.96 85.55 0.34 1.40 16 15 N -0.53 -20.04 4.34 -900.91 -3.91 -23.95 16 16 C 0.07 2.78 5.46 86.32 0.47 3.25 16 17 C -0.10 -4.75 5.12 30.65 0.16 -4.59 16 18 C 0.05 2.52 2.16 -11.46 -0.02 2.50 16 19 C -0.53 -31.39 8.56 25.60 0.22 -31.17 16 20 H 0.04 2.62 7.74 -2.91 -0.02 2.60 16 21 C 0.01 0.83 5.31 84.66 0.45 1.28 16 22 N -0.91 -53.68 11.37 21.45 0.24 -53.43 16 23 Si 0.95 45.34 29.54 68.60 2.03 47.37 16 24 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 25 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 26 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 27 C -0.10 -4.58 5.32 30.65 0.16 -4.41 16 28 C 0.08 3.04 5.12 86.33 0.44 3.48 16 29 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.08 0.42 7.79 -2.38 -0.02 0.40 16 31 H 0.07 0.72 5.21 -2.39 -0.01 0.71 16 32 H 0.10 0.86 3.31 -2.39 -0.01 0.85 16 33 H 0.08 0.51 8.11 -2.38 -0.02 0.49 16 34 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.05 0.99 7.58 -2.39 -0.02 0.97 16 37 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 39 H 0.04 1.26 6.53 -2.39 -0.02 1.24 16 40 H 0.07 0.70 6.78 -2.39 -0.02 0.69 16 41 H 0.08 0.76 6.72 -2.38 -0.02 0.74 16 42 H 0.13 0.99 2.75 -2.39 -0.01 0.99 16 43 H 0.12 2.68 7.53 -2.39 -0.02 2.67 16 44 H 0.07 1.72 7.90 -2.38 -0.02 1.70 16 45 H 0.08 2.78 8.00 -2.39 -0.02 2.76 16 46 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.07 3.73 6.18 -2.39 -0.01 3.72 16 48 H 0.02 1.32 8.14 -2.38 -0.02 1.30 16 49 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 50 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 51 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 52 H 0.04 2.01 8.14 -2.39 -0.02 2.00 16 53 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 54 H 0.07 2.82 6.11 -2.38 -0.01 2.80 16 Total: -1.00 -71.31 383.34 2.56 -68.75 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.86 Total: 14.13 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: 5.02 Total: -17.60 kcal Atomic # 7 Polarization: -85.71 SS G_CDS: -5.30 Total: -91.01 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.04 Total: -21.63 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -71.31 2.56 -68.75 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541024760.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.757 kcal (2) G-P(sol) polarization free energy of solvation -71.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds