Wall clock time and date at job start Tue Mar 31 2020 15:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46681 * 2 1 4 4 C 1.53000 * 109.47577 * 240.00347 * 2 1 3 5 5 C 1.52999 * 109.46965 * 300.00206 * 4 2 1 6 6 C 1.53008 * 109.46740 * 299.99535 * 5 4 2 7 7 C 1.52997 * 109.47192 * 60.00171 * 6 5 4 8 8 C 1.52998 * 109.47425 * 120.00100 * 2 1 3 9 9 H 1.08996 * 109.47494 * 180.02562 * 8 2 1 10 10 C 1.52997 * 109.47125 * 300.00312 * 8 2 1 11 11 C 1.52999 * 109.47100 * 184.99889 * 10 8 2 12 12 N 1.46505 * 109.47016 * 179.97438 * 11 10 8 13 13 C 1.34779 * 120.00126 * 179.97438 * 12 11 10 14 14 O 1.21593 * 120.00008 * 355.01842 * 13 12 11 15 15 N 1.34776 * 120.00317 * 175.01656 * 13 12 11 16 16 C 1.46922 * 120.62709 * 4.94029 * 15 13 12 17 17 C 1.53629 * 108.54085 * 126.37369 * 16 15 13 18 18 C 1.53035 * 109.24251 * 54.85586 * 17 16 15 19 19 C 1.50700 * 109.44963 * 178.50295 * 18 17 16 20 20 H 1.07989 * 120.00575 * 120.05966 * 19 18 17 21 21 C 1.37885 * 119.99468 * 300.05889 * 19 18 17 22 22 N 1.31511 * 120.00175 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99739 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47047 * 89.99879 * 23 21 19 25 25 H 1.48500 * 109.47019 * 209.99583 * 23 21 19 26 26 H 1.48495 * 109.47377 * 329.99782 * 23 21 19 27 27 C 1.53043 * 109.53587 * 298.51015 * 18 17 16 28 28 C 1.46921 * 120.63243 * 185.22652 * 15 13 12 29 29 H 1.09004 * 109.46681 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46988 * 299.99166 * 1 2 3 31 31 H 1.08995 * 109.47076 * 60.00319 * 1 2 3 32 32 H 1.08996 * 109.47699 * 179.97438 * 4 2 1 33 33 H 1.09007 * 109.46854 * 59.99562 * 4 2 1 34 34 H 1.09001 * 109.47277 * 179.97438 * 5 4 2 35 35 H 1.08996 * 109.47476 * 59.99173 * 5 4 2 36 36 H 1.08996 * 109.46840 * 300.00027 * 6 5 4 37 37 H 1.08999 * 109.46897 * 180.02562 * 6 5 4 38 38 H 1.08996 * 109.47078 * 59.99685 * 7 6 5 39 39 H 1.08995 * 109.47188 * 179.97438 * 7 6 5 40 40 H 1.09001 * 109.47298 * 305.00094 * 10 8 2 41 41 H 1.09000 * 109.47571 * 64.99829 * 10 8 2 42 42 H 1.08995 * 109.47109 * 299.99543 * 11 10 8 43 43 H 1.09000 * 109.47492 * 60.00112 * 11 10 8 44 44 H 0.96991 * 120.00078 * 0.02562 * 12 11 10 45 45 H 1.08996 * 109.58658 * 246.20092 * 16 15 13 46 46 H 1.08998 * 109.59118 * 6.63198 * 16 15 13 47 47 H 1.08999 * 109.63231 * 294.86311 * 17 16 15 48 48 H 1.08996 * 109.42857 * 174.72583 * 17 16 15 49 49 H 1.09001 * 109.46511 * 58.53048 * 18 17 16 50 50 H 0.96999 * 120.00608 * 180.02562 * 22 21 19 51 51 H 1.08999 * 109.50177 * 301.41199 * 27 18 17 52 52 H 1.09006 * 109.49536 * 181.31544 * 27 18 17 53 53 H 1.09006 * 109.58725 * 353.36503 * 28 15 13 54 54 H 1.08996 * 109.59232 * 113.79243 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5301 -2.1636 -1.2494 6 6 2.0402 -2.8849 -0.0001 7 6 1.5302 -2.1638 1.2492 8 6 2.0401 -0.7212 1.2492 9 1 3.1300 -0.7209 1.2494 10 6 1.5300 -0.0001 2.4984 11 6 2.1402 -0.6451 3.7445 12 7 1.6522 0.0458 4.9407 13 6 2.0585 -0.3532 6.1622 14 8 2.7571 -1.3417 6.2778 15 7 1.6905 0.3434 7.2558 16 6 0.7600 1.4750 7.1443 17 6 -0.4047 1.2476 8.1200 18 6 0.1526 1.0290 9.5284 19 6 -0.9876 0.8421 10.4958 20 1 -1.0709 -0.0738 11.0620 21 6 -1.9247 1.8405 10.6581 22 7 -1.8230 2.9560 9.9691 23 14 -3.3377 1.6091 11.8578 24 1 -2.9367 2.1094 13.1973 25 1 -4.5217 2.3676 11.3802 26 1 -3.6779 0.1666 11.9497 27 6 1.0403 -0.2176 9.5397 28 6 2.2170 -0.0103 8.5810 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.1301 -0.7208 -1.2495 33 1 1.6767 -0.2073 -2.1393 34 1 1.8931 -2.6773 -2.1396 35 1 0.4401 -2.1637 -1.2493 36 1 3.1301 -2.8849 -0.0002 37 1 1.6772 -3.9127 -0.0004 38 1 0.4402 -2.1638 1.2491 39 1 1.8931 -2.6779 2.1391 40 1 1.8183 1.0502 2.4548 41 1 0.4437 -0.0770 2.5444 42 1 1.8518 -1.6953 3.7881 43 1 3.2265 -0.5682 3.6986 44 1 1.0363 0.7900 4.8536 45 1 1.2776 2.4000 7.3981 46 1 0.3782 1.5352 6.1251 47 1 -0.9733 0.3697 7.8134 48 1 -1.0554 2.1220 8.1179 49 1 0.7417 1.8969 9.8247 50 1 -2.4819 3.6586 10.0835 51 1 0.4582 -1.0818 9.2198 52 1 1.4181 -0.3860 10.5483 53 1 2.7969 -0.9306 8.5100 54 1 2.8510 0.7960 8.9495 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541914607.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:39 Heat of formation + Delta-G solvation = -82.610845 kcal Electronic energy + Delta-G solvation = -28133.875166 eV Core-core repulsion = 24489.157398 eV Total energy + Delta-G solvation = -3644.717769 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.39145 -40.38268 -38.55610 -36.38480 -35.33058 -33.79734 -32.89060 -32.49109 -31.59826 -29.36033 -27.95898 -27.17074 -25.04721 -24.36765 -23.77778 -22.92975 -21.85491 -21.67538 -20.32635 -19.24242 -19.08530 -18.24309 -17.40619 -16.78767 -16.62456 -16.46952 -16.00751 -15.48624 -15.25620 -15.11969 -14.99801 -14.87514 -14.58197 -14.39658 -14.26419 -13.95747 -13.76961 -13.56358 -13.22225 -13.13228 -13.03484 -12.82237 -12.59296 -12.53410 -12.44045 -12.37613 -12.13908 -12.05439 -11.98652 -11.88470 -11.49004 -11.48530 -11.26468 -11.02429 -10.98732 -10.82450 -10.75591 -10.71563 -10.39306 -10.15031 -9.36505 -8.07332 -6.20146 1.41320 1.43476 1.52320 1.74366 2.15095 2.44571 2.96124 3.19032 3.71026 3.77120 3.85815 4.08725 4.11799 4.19764 4.24779 4.35634 4.40385 4.43558 4.47655 4.50601 4.53378 4.54101 4.59171 4.64309 4.70091 4.74245 4.81737 4.86339 4.88978 4.97876 5.01314 5.05838 5.13588 5.15132 5.19911 5.21998 5.25061 5.27336 5.31663 5.39333 5.44074 5.46163 5.49442 5.52469 5.56733 5.59987 5.66868 5.73675 5.99744 6.07884 6.14215 6.40666 6.88879 6.99557 7.47224 7.57470 8.95991 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.019828 B = 0.002305 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.830855 B =12144.090931 C =12874.074489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.083 4.083 3 H 0.073 0.927 4 C -0.113 4.113 5 C -0.120 4.120 6 C -0.119 4.119 7 C -0.121 4.121 8 C -0.072 4.072 9 H 0.071 0.929 10 C -0.118 4.118 11 C 0.139 3.861 12 N -0.738 5.738 13 C 0.700 3.300 14 O -0.639 6.639 15 N -0.623 5.623 16 C 0.121 3.879 17 C -0.114 4.114 18 C 0.046 3.954 19 C -0.535 4.535 20 H 0.046 0.954 21 C 0.018 3.982 22 N -0.911 5.911 23 Si 0.948 3.052 24 H -0.277 1.277 25 H -0.281 1.281 26 H -0.275 1.275 27 C -0.114 4.114 28 C 0.135 3.865 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.406 0.594 45 H 0.068 0.932 46 H 0.090 0.910 47 H 0.025 0.975 48 H 0.081 0.919 49 H 0.005 0.995 50 H 0.262 0.738 51 H 0.038 0.962 52 H 0.064 0.936 53 H 0.078 0.922 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.332 -3.886 -23.499 24.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.101 4.101 3 H 0.091 0.909 4 C -0.151 4.151 5 C -0.157 4.157 6 C -0.156 4.156 7 C -0.158 4.158 8 C -0.091 4.091 9 H 0.089 0.911 10 C -0.155 4.155 11 C 0.015 3.985 12 N -0.396 5.396 13 C 0.402 3.598 14 O -0.522 6.522 15 N -0.359 5.359 16 C -0.001 4.001 17 C -0.152 4.152 18 C 0.027 3.973 19 C -0.573 4.573 20 H 0.064 0.936 21 C -0.181 4.181 22 N -0.550 5.550 23 Si 0.774 3.226 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.200 1.200 27 C -0.152 4.152 28 C 0.012 3.988 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.244 0.756 45 H 0.087 0.913 46 H 0.108 0.892 47 H 0.043 0.957 48 H 0.099 0.901 49 H 0.024 0.976 50 H 0.071 0.929 51 H 0.057 0.943 52 H 0.083 0.917 53 H 0.096 0.904 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.750 -4.409 -23.459 24.806 hybrid contribution -1.171 0.231 1.063 1.598 sum 5.580 -4.178 -22.396 23.456 Atomic orbital electron populations 1.21995 0.95226 1.02067 1.01767 1.21080 0.96038 0.99077 0.93901 0.90884 1.21553 1.00517 0.95560 0.97423 1.21567 1.00986 0.95705 0.97490 1.21516 1.00656 0.98842 0.94595 1.21695 1.01043 0.95284 0.97822 1.21030 1.00197 0.94565 0.93302 0.91092 1.21843 1.01314 1.00349 0.92026 1.21312 0.98310 0.96103 0.82751 1.45272 1.51757 1.38594 1.04012 1.16048 0.80152 0.82225 0.81402 1.90822 1.46087 1.29011 1.86265 1.47415 1.48403 1.33740 1.06359 1.21856 0.90214 0.87932 1.00118 1.21856 0.96729 1.01145 0.95514 1.18599 0.93270 0.92432 0.92970 1.21548 1.10569 1.01726 1.23425 0.93598 1.25619 0.99994 0.95053 0.97422 1.69933 1.36721 1.06525 1.41856 0.85717 0.79369 0.77975 0.79528 1.20308 1.20692 1.19970 1.21873 0.96277 0.98947 0.98132 1.21456 0.95644 1.00888 0.80828 0.92279 0.92591 0.92538 0.92053 0.91497 0.91805 0.91759 0.92208 0.92153 0.91672 0.92854 0.90183 0.90553 0.92857 0.92760 0.75557 0.91346 0.89212 0.95650 0.90099 0.97642 0.92896 0.94337 0.91717 0.90354 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.15 71.98 0.59 -1.26 16 2 C -0.08 -0.98 2.72 -10.79 -0.03 -1.01 16 3 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 4 C -0.11 -1.25 5.45 30.59 0.17 -1.08 16 5 C -0.12 -1.38 5.65 30.60 0.17 -1.20 16 6 C -0.12 -1.58 5.92 30.60 0.18 -1.39 16 7 C -0.12 -1.83 4.68 30.59 0.14 -1.69 16 8 C -0.07 -1.00 1.96 -10.79 -0.02 -1.02 16 9 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 10 C -0.12 -1.82 4.29 30.59 0.13 -1.69 16 11 C 0.14 3.15 5.44 86.38 0.47 3.62 16 12 N -0.74 -19.93 5.47 -478.52 -2.62 -22.54 16 13 C 0.70 25.19 8.30 179.05 1.49 26.67 16 14 O -0.64 -27.32 15.77 -4.01 -0.06 -27.39 16 15 N -0.62 -22.50 2.97 -836.07 -2.48 -24.98 16 16 C 0.12 4.15 6.42 86.51 0.56 4.71 16 17 C -0.11 -5.00 5.17 30.82 0.16 -4.84 16 18 C 0.05 2.21 2.06 -11.51 -0.02 2.19 16 19 C -0.53 -28.94 8.56 25.60 0.22 -28.72 16 20 H 0.05 2.50 7.74 -2.92 -0.02 2.48 16 21 C 0.02 0.97 5.30 84.66 0.45 1.42 16 22 N -0.91 -49.90 11.31 21.45 0.24 -49.66 16 23 Si 0.95 42.82 29.54 68.60 2.03 44.85 16 24 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 25 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 26 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 27 C -0.11 -4.79 5.30 30.67 0.16 -4.62 16 28 C 0.13 5.03 6.44 86.36 0.56 5.58 16 29 H 0.06 0.74 4.81 -2.39 -0.01 0.73 16 30 H 0.06 0.70 6.54 -2.39 -0.02 0.68 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.06 0.75 6.43 -2.39 -0.02 0.73 16 36 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.06 1.00 6.43 -2.39 -0.02 0.98 16 39 H 0.05 0.95 6.57 -2.39 -0.02 0.93 16 40 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.08 1.16 6.71 -2.39 -0.02 1.15 16 42 H 0.05 1.36 6.56 -2.39 -0.02 1.35 16 43 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.41 9.17 5.96 -92.71 -0.55 8.62 16 45 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 46 H 0.09 2.46 5.64 -2.39 -0.01 2.44 16 47 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.08 3.95 6.03 -2.39 -0.01 3.94 16 49 H 0.01 0.28 8.14 -2.39 -0.02 0.27 16 50 H 0.26 13.67 8.31 -92.71 -0.77 12.90 16 51 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 52 H 0.06 2.61 8.14 -2.38 -0.02 2.59 16 53 H 0.08 2.95 7.00 -2.38 -0.02 2.94 16 54 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -63.22 393.17 2.79 -60.43 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: 0.31 Total: 23.62 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: 5.36 Total: -4.34 kcal Atomic # 7 Polarization: -92.32 SS G_CDS: -4.85 Total: -97.18 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.06 Total: -27.39 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -63.22 2.79 -60.43 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541914607.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.183 kcal (2) G-P(sol) polarization free energy of solvation -63.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds