Wall clock time and date at job start Tue Mar 31 2020 15:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46665 * 2 1 4 4 C 1.53000 * 109.46928 * 119.99940 * 2 1 3 5 5 C 1.52999 * 109.46538 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47819 * 300.00064 * 5 4 2 7 7 C 1.53005 * 109.46867 * 60.00068 * 6 5 4 8 8 C 1.52999 * 109.47168 * 300.00326 * 7 6 5 9 9 H 1.08998 * 109.47321 * 300.00092 * 8 7 6 10 10 C 1.52997 * 109.47278 * 179.97438 * 8 7 6 11 11 C 1.53000 * 109.46961 * 65.00051 * 10 8 7 12 12 N 1.46496 * 109.47307 * 179.97438 * 11 10 8 13 13 C 1.34774 * 120.00691 * 179.97438 * 12 11 10 14 14 O 1.21594 * 119.99529 * 355.02003 * 13 12 11 15 15 N 1.34776 * 120.00727 * 175.01451 * 13 12 11 16 16 C 1.46924 * 120.62458 * 4.94630 * 15 13 12 17 17 C 1.53625 * 108.54334 * 126.37121 * 16 15 13 18 18 C 1.53042 * 109.24569 * 54.85048 * 17 16 15 19 19 C 1.50691 * 109.46051 * 178.49385 * 18 17 16 20 20 H 1.08001 * 119.99735 * 120.06990 * 19 18 17 21 21 C 1.37875 * 120.00534 * 300.06682 * 19 18 17 22 22 N 1.31517 * 119.99417 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00430 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47183 * 60.00305 * 23 21 19 25 25 H 1.48501 * 109.47092 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47176 * 300.00108 * 23 21 19 27 27 C 1.53043 * 109.53698 * 298.51795 * 18 17 16 28 28 C 1.46923 * 120.63515 * 185.22327 * 15 13 12 29 29 H 1.08999 * 109.46665 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47064 * 299.99493 * 1 2 3 31 31 H 1.08995 * 109.47073 * 59.99525 * 1 2 3 32 32 H 1.08990 * 109.47412 * 300.00171 * 4 2 1 33 33 H 1.08999 * 109.46946 * 60.00792 * 4 2 1 34 34 H 1.09008 * 109.46961 * 180.02562 * 5 4 2 35 35 H 1.08999 * 109.47313 * 60.00783 * 5 4 2 36 36 H 1.08999 * 109.47265 * 300.00749 * 6 5 4 37 37 H 1.08996 * 109.47584 * 180.02562 * 6 5 4 38 38 H 1.08999 * 109.47341 * 60.00089 * 7 6 5 39 39 H 1.09001 * 109.47215 * 180.02562 * 7 6 5 40 40 H 1.09000 * 109.47117 * 184.99835 * 10 8 7 41 41 H 1.08993 * 109.47411 * 305.00114 * 10 8 7 42 42 H 1.08997 * 109.47296 * 300.00291 * 11 10 8 43 43 H 1.09003 * 109.47255 * 60.00551 * 11 10 8 44 44 H 0.97002 * 120.00067 * 0.02562 * 12 11 10 45 45 H 1.09003 * 109.58315 * 246.19759 * 16 15 13 46 46 H 1.08991 * 109.59290 * 6.62256 * 16 15 13 47 47 H 1.09002 * 109.63058 * 294.86119 * 17 16 15 48 48 H 1.08999 * 109.43742 * 174.72339 * 17 16 15 49 49 H 1.08997 * 109.44640 * 58.52669 * 18 17 16 50 50 H 0.97001 * 119.99807 * 180.02562 * 22 21 19 51 51 H 1.09003 * 109.49532 * 301.41021 * 27 18 17 52 52 H 1.08992 * 109.52375 * 181.33418 * 27 18 17 53 53 H 1.09006 * 109.58221 * 353.37753 * 28 15 13 54 54 H 1.08999 * 109.58614 * 113.65537 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7218 1.2489 6 6 4.0796 -1.4433 -0.0003 7 6 3.5696 -0.7220 -1.2496 8 6 2.0396 -0.7215 -1.2493 9 1 1.6759 -1.7490 -1.2491 10 6 1.5295 0.0003 -2.4982 11 6 1.9338 -0.7897 -3.7446 12 7 1.4449 -0.0989 -4.9404 13 6 1.6852 -0.6146 -6.1622 14 8 2.3840 -1.6029 -6.2782 15 7 1.1510 -0.0349 -7.2554 16 6 0.3947 1.2197 -7.1433 17 6 0.9973 2.2422 -8.1188 18 6 1.0172 1.6443 -9.5275 19 6 1.5733 2.6571 -10.4949 20 1 2.4643 2.4301 -11.0615 21 6 0.9447 3.8735 -10.6568 22 7 -0.1401 4.1500 -9.9665 23 14 1.6336 5.1286 -11.8565 24 1 1.6509 4.5491 -13.2236 25 1 0.7813 6.3446 -11.8446 26 1 3.0167 5.4903 -11.4546 27 6 1.8962 0.3915 -9.5394 28 6 1.3085 -0.6488 -8.5809 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6767 -0.2075 2.1392 33 1 1.6768 -1.7489 1.2492 34 1 3.9334 -1.2360 2.1387 35 1 3.9337 0.3058 1.2487 36 1 3.7159 -2.4708 -0.0002 37 1 5.1696 -1.4440 -0.0004 38 1 3.9332 0.3055 -1.2498 39 1 3.9322 -1.2363 -2.1396 40 1 0.4433 0.0788 -2.4542 41 1 1.9644 0.9986 -2.5439 42 1 3.0200 -0.8683 -3.7885 43 1 1.4988 -1.7881 -3.6989 44 1 0.9488 0.7301 -4.8529 45 1 -0.6501 1.0405 -7.3969 46 1 0.4655 1.5993 -6.1241 47 1 2.0147 2.4852 -7.8124 48 1 0.3901 3.1474 -8.1163 49 1 0.0023 1.3786 -9.8233 50 1 -0.5826 5.0056 -10.0806 51 1 2.9051 0.6520 -9.2196 52 1 1.9293 -0.0206 -10.5479 53 1 1.9826 -1.5026 -8.5103 54 1 0.3371 -0.9797 -8.9482 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541914608.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:42 Heat of formation + Delta-G solvation = -86.043251 kcal Electronic energy + Delta-G solvation = -28041.209920 eV Core-core repulsion = 24396.343311 eV Total energy + Delta-G solvation = -3644.866609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.38369 -40.14032 -38.54474 -36.35489 -35.32878 -33.92997 -33.30819 -32.56103 -31.59808 -29.29221 -27.88787 -26.91149 -25.06855 -24.38040 -23.77563 -22.23079 -21.83765 -21.56562 -20.63200 -20.22528 -19.08737 -18.23721 -17.37189 -16.78701 -16.54740 -16.06692 -15.80483 -15.49118 -15.21786 -15.19188 -15.01077 -14.86301 -14.69625 -14.48691 -14.32215 -14.15366 -13.85468 -13.24828 -13.20200 -13.12083 -12.87567 -12.79333 -12.63307 -12.59670 -12.47321 -12.30783 -12.18734 -12.13350 -11.98382 -11.75886 -11.65596 -11.48429 -11.27454 -11.23932 -10.99071 -10.80972 -10.74814 -10.73176 -10.39018 -10.15268 -9.36564 -8.07046 -6.19964 1.43077 1.43564 1.50914 1.74256 2.15054 2.44763 2.96004 3.19231 3.68834 3.77889 3.84716 4.08290 4.12082 4.13873 4.23584 4.35059 4.38369 4.40599 4.47324 4.47970 4.55263 4.59235 4.61803 4.66943 4.70309 4.71873 4.78349 4.88929 4.89690 4.97766 4.99768 5.03764 5.07403 5.15892 5.21396 5.22823 5.24711 5.26105 5.34853 5.36661 5.43017 5.44087 5.49214 5.51815 5.55943 5.59105 5.66804 5.69618 5.99811 6.07814 6.14306 6.40772 6.88844 6.99469 7.47340 7.57405 8.96075 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.019682 B = 0.002270 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.259285 B =12331.382548 C =12835.094828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.082 4.082 3 H 0.068 0.932 4 C -0.112 4.112 5 C -0.119 4.119 6 C -0.119 4.119 7 C -0.120 4.120 8 C -0.071 4.071 9 H 0.071 0.929 10 C -0.120 4.120 11 C 0.139 3.861 12 N -0.738 5.738 13 C 0.700 3.300 14 O -0.639 6.639 15 N -0.623 5.623 16 C 0.121 3.879 17 C -0.114 4.114 18 C 0.046 3.954 19 C -0.536 4.536 20 H 0.046 0.954 21 C 0.018 3.982 22 N -0.911 5.911 23 Si 0.948 3.052 24 H -0.275 1.275 25 H -0.282 1.282 26 H -0.276 1.276 27 C -0.114 4.114 28 C 0.135 3.865 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.406 0.594 45 H 0.068 0.932 46 H 0.090 0.910 47 H 0.024 0.976 48 H 0.081 0.919 49 H 0.005 0.995 50 H 0.262 0.738 51 H 0.038 0.962 52 H 0.064 0.936 53 H 0.078 0.922 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.976 -7.682 23.479 24.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.101 4.101 3 H 0.087 0.913 4 C -0.150 4.150 5 C -0.156 4.156 6 C -0.157 4.157 7 C -0.157 4.157 8 C -0.090 4.090 9 H 0.089 0.911 10 C -0.157 4.157 11 C 0.016 3.984 12 N -0.396 5.396 13 C 0.402 3.598 14 O -0.522 6.522 15 N -0.359 5.359 16 C -0.001 4.001 17 C -0.153 4.153 18 C 0.028 3.972 19 C -0.574 4.574 20 H 0.064 0.936 21 C -0.181 4.181 22 N -0.550 5.550 23 Si 0.774 3.226 24 H -0.200 1.200 25 H -0.207 1.207 26 H -0.202 1.202 27 C -0.152 4.152 28 C 0.012 3.988 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.244 0.756 45 H 0.087 0.913 46 H 0.108 0.892 47 H 0.043 0.957 48 H 0.099 0.901 49 H 0.024 0.976 50 H 0.071 0.929 51 H 0.057 0.943 52 H 0.083 0.917 53 H 0.096 0.904 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.322 -8.253 23.438 24.884 hybrid contribution 0.217 1.200 -1.054 1.612 sum 1.538 -7.052 22.384 23.519 Atomic orbital electron populations 1.21915 0.94900 1.01953 1.02057 1.21106 0.95686 0.99380 0.93925 0.91306 1.21579 0.95330 1.00670 0.97399 1.21535 0.95825 1.00655 0.97617 1.21526 1.00239 0.99365 0.94547 1.21671 0.95287 1.00852 0.97939 1.21052 0.95090 0.99584 0.93301 0.91104 1.21874 1.02466 0.99351 0.92027 1.21304 0.98709 0.95689 0.82744 1.45270 1.61339 1.29015 1.04009 1.16046 0.79868 0.82511 0.81401 1.90822 1.44738 1.30362 1.86260 1.47415 1.56360 1.25778 1.06359 1.21856 0.95123 0.83028 1.00112 1.21860 0.98753 0.99115 0.95528 1.18593 0.94071 0.91622 0.92952 1.21521 1.11282 1.01083 1.23489 0.93584 1.25619 0.95245 0.99782 0.97435 1.69932 1.19484 1.23747 1.41854 0.85774 0.78306 0.78692 0.79823 1.19997 1.20734 1.20176 1.21867 0.98737 0.96480 0.98128 1.21452 1.00985 0.95551 0.80824 0.92733 0.92335 0.92209 0.91462 0.92067 0.91590 0.92151 0.92128 0.92072 0.92052 0.92675 0.89774 0.90846 0.92878 0.92734 0.75555 0.91331 0.89217 0.95681 0.90088 0.97644 0.92892 0.94332 0.91719 0.90375 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.85 71.98 0.64 -1.07 16 2 C -0.08 -1.00 2.25 -10.79 -0.02 -1.02 16 3 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 4 C -0.11 -1.25 5.20 30.59 0.16 -1.09 16 5 C -0.12 -1.37 5.92 30.59 0.18 -1.19 16 6 C -0.12 -1.59 5.92 30.60 0.18 -1.41 16 7 C -0.12 -1.83 4.96 30.60 0.15 -1.68 16 8 C -0.07 -1.00 1.72 -10.79 -0.02 -1.02 16 9 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 10 C -0.12 -1.86 4.58 30.59 0.14 -1.72 16 11 C 0.14 3.17 5.43 86.38 0.47 3.64 16 12 N -0.74 -19.95 5.46 -478.54 -2.62 -22.56 16 13 C 0.70 25.19 8.30 179.06 1.49 26.68 16 14 O -0.64 -27.32 15.77 -4.01 -0.06 -27.39 16 15 N -0.62 -22.50 2.97 -836.08 -2.48 -24.98 16 16 C 0.12 4.15 6.42 86.51 0.56 4.71 16 17 C -0.11 -5.01 5.17 30.82 0.16 -4.85 16 18 C 0.05 2.23 2.06 -11.51 -0.02 2.20 16 19 C -0.54 -29.00 8.56 25.60 0.22 -28.78 16 20 H 0.05 2.50 7.74 -2.91 -0.02 2.48 16 21 C 0.02 0.98 5.30 84.65 0.45 1.43 16 22 N -0.91 -49.91 11.30 21.45 0.24 -49.67 16 23 Si 0.95 42.80 29.54 68.60 2.03 44.83 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 26 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 27 C -0.11 -4.78 5.30 30.67 0.16 -4.62 16 28 C 0.14 5.03 6.44 86.36 0.56 5.58 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.68 6.32 -2.39 -0.02 0.67 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 35 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.05 0.98 6.57 -2.39 -0.02 0.97 16 40 H 0.08 1.17 6.17 -2.39 -0.01 1.15 16 41 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.05 1.36 6.57 -2.39 -0.02 1.34 16 43 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.41 9.18 5.96 -92.71 -0.55 8.63 16 45 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 46 H 0.09 2.45 5.64 -2.39 -0.01 2.44 16 47 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.08 3.96 6.03 -2.39 -0.01 3.95 16 49 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 50 H 0.26 13.72 8.31 -92.71 -0.77 12.94 16 51 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 52 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 53 H 0.08 2.94 7.00 -2.38 -0.02 2.93 16 54 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -63.15 399.73 2.85 -60.30 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: 0.30 Total: 23.69 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 5.44 Total: -4.22 kcal Atomic # 7 Polarization: -92.35 SS G_CDS: -4.85 Total: -97.20 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.06 Total: -27.39 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -63.15 2.85 -60.30 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541914608.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.747 kcal (2) G-P(sol) polarization free energy of solvation -63.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds