Wall clock time and date at job start Tue Mar 31 2020 15:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46780 * 2 1 4 4 C 1.53005 * 109.46868 * 240.00360 * 2 1 3 5 5 C 1.52997 * 109.46972 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47215 * 59.99908 * 5 4 2 7 7 C 1.52996 * 109.47385 * 300.00301 * 6 5 4 8 8 C 1.52993 * 109.47167 * 120.00718 * 2 1 3 9 9 H 1.08995 * 109.47857 * 59.99941 * 8 2 1 10 10 C 1.53005 * 109.46935 * 299.99602 * 8 2 1 11 11 C 1.53002 * 109.47092 * 175.00289 * 10 8 2 12 12 N 1.46495 * 109.47373 * 180.02562 * 11 10 8 13 13 C 1.34778 * 120.00505 * 180.02562 * 12 11 10 14 14 O 1.21589 * 119.99810 * 355.01307 * 13 12 11 15 15 N 1.34769 * 119.99992 * 175.01352 * 13 12 11 16 16 C 1.46925 * 120.63456 * 4.94042 * 15 13 12 17 17 C 1.53628 * 108.54046 * 126.36706 * 16 15 13 18 18 C 1.53039 * 109.24175 * 54.86111 * 17 16 15 19 19 C 1.50708 * 109.46039 * 178.48838 * 18 17 16 20 20 H 1.07998 * 120.00074 * 120.06132 * 19 18 17 21 21 C 1.37879 * 119.99482 * 300.07028 * 19 18 17 22 22 N 1.31514 * 119.99247 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00375 * 359.97438 * 21 19 18 24 24 H 1.48507 * 109.46718 * 90.00751 * 23 21 19 25 25 H 1.48496 * 109.47236 * 210.00208 * 23 21 19 26 26 H 1.48498 * 109.47406 * 330.00491 * 23 21 19 27 27 C 1.53037 * 109.53740 * 298.50680 * 18 17 16 28 28 C 1.46932 * 120.62820 * 185.21955 * 15 13 12 29 29 H 1.09001 * 109.46951 * 299.98953 * 1 2 3 30 30 H 1.08989 * 109.47566 * 59.99820 * 1 2 3 31 31 H 1.09004 * 109.46913 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46951 * 59.99853 * 4 2 1 33 33 H 1.09004 * 109.46964 * 300.00035 * 4 2 1 34 34 H 1.08994 * 109.47359 * 300.00081 * 5 4 2 35 35 H 1.09001 * 109.46751 * 180.02562 * 5 4 2 36 36 H 1.08998 * 109.47222 * 179.97438 * 6 5 4 37 37 H 1.09007 * 109.46619 * 60.00102 * 6 5 4 38 38 H 1.09004 * 109.46567 * 300.00072 * 7 6 5 39 39 H 1.08993 * 109.47268 * 179.97438 * 7 6 5 40 40 H 1.08995 * 109.47263 * 294.99887 * 10 8 2 41 41 H 1.08992 * 109.47264 * 55.00544 * 10 8 2 42 42 H 1.08995 * 109.47195 * 300.00195 * 11 10 8 43 43 H 1.09000 * 109.47165 * 60.00008 * 11 10 8 44 44 H 0.97006 * 119.99808 * 359.97438 * 12 11 10 45 45 H 1.08995 * 109.58707 * 246.19631 * 16 15 13 46 46 H 1.08998 * 109.58464 * 6.62845 * 16 15 13 47 47 H 1.09000 * 109.63453 * 294.86691 * 17 16 15 48 48 H 1.09004 * 109.45350 * 174.73987 * 17 16 15 49 49 H 1.09000 * 109.46340 * 58.52993 * 18 17 16 50 50 H 0.97005 * 120.00059 * 179.97438 * 22 21 19 51 51 H 1.09005 * 109.49819 * 301.41366 * 27 18 17 52 52 H 1.08997 * 109.52260 * 181.33523 * 27 18 17 53 53 H 1.08995 * 109.58587 * 353.37585 * 28 15 13 54 54 H 1.09005 * 109.58776 * 113.80027 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7207 -1.2497 6 6 4.0805 -1.4416 -0.0005 7 6 3.5706 -0.7205 1.2488 8 6 2.0400 -0.7214 1.2491 9 1 1.6768 -1.7490 1.2491 10 6 1.5301 -0.0002 2.4984 11 6 1.9349 -0.7904 3.7445 12 7 1.4461 -0.1003 4.9407 13 6 1.6870 -0.6163 6.1622 14 8 2.2298 -1.6991 6.2685 15 7 1.3261 0.0678 7.2658 16 6 0.5738 1.3249 7.1548 17 6 -0.6906 1.2157 8.0205 18 6 -0.2920 0.8465 9.4512 19 6 -1.5259 0.7744 10.3135 20 1 -1.7831 -0.1485 10.8121 21 6 -2.3264 1.8866 10.4657 22 7 -3.4029 1.8237 11.2186 23 14 -1.8813 3.4829 9.6038 24 1 -2.5178 3.5153 8.2625 25 1 -2.3659 4.6323 10.4095 26 1 -0.4065 3.5702 9.4541 27 6 0.4108 -0.5129 9.4521 28 6 1.6828 -0.4262 8.6028 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8898 31 1 -0.3633 -1.0277 0.0005 32 1 1.6766 -0.2073 -2.1393 33 1 1.6766 -1.7489 -1.2494 34 1 3.9330 0.3071 -1.2499 35 1 3.9332 -1.2341 -2.1400 36 1 5.1705 -1.4416 -0.0010 37 1 3.7175 -2.4695 -0.0004 38 1 3.9335 0.3073 1.2486 39 1 3.9339 -1.2344 2.1387 40 1 1.9647 0.9983 2.5444 41 1 0.4438 0.0780 2.4549 42 1 1.5003 -1.7889 3.6985 43 1 3.0212 -0.8687 3.7881 44 1 0.9498 0.7286 4.8536 45 1 1.1904 2.1520 7.5065 46 1 0.2930 1.4921 6.1149 47 1 -1.3465 0.4451 7.6153 48 1 -1.2123 2.1728 8.0237 49 1 0.3836 1.6048 9.8471 50 1 -3.9660 2.6063 11.3261 51 1 -0.2555 -1.2672 9.0334 52 1 0.6735 -0.7865 10.4739 53 1 2.1341 -1.4148 8.5187 54 1 2.3881 0.2610 9.0702 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541914610.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:50 Heat of formation + Delta-G solvation = -81.122654 kcal Electronic energy + Delta-G solvation = -28156.858631 eV Core-core repulsion = 24512.205395 eV Total energy + Delta-G solvation = -3644.653236 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.44635 -40.15035 -38.71853 -36.37549 -35.32547 -33.96674 -33.43215 -32.86676 -31.88771 -29.34341 -28.06631 -26.93045 -25.02593 -24.26148 -24.03959 -22.24792 -21.83746 -21.60154 -20.64867 -20.29507 -19.12191 -18.73016 -17.40306 -16.87450 -16.62419 -16.10378 -15.79982 -15.49407 -15.34392 -15.25146 -15.12190 -14.97288 -14.77580 -14.60894 -14.41779 -14.19744 -13.97521 -13.70181 -13.39776 -13.24297 -12.89325 -12.78848 -12.63843 -12.60843 -12.31516 -12.27784 -12.19076 -12.09408 -11.86833 -11.75660 -11.65678 -11.48923 -11.32445 -11.25527 -11.03860 -11.00460 -10.75831 -10.74795 -10.63826 -10.17508 -9.41098 -8.26675 -6.31929 1.32681 1.40842 1.51452 1.69292 2.13030 2.36373 2.91619 3.08089 3.68428 3.77659 3.84072 3.98874 4.04627 4.10342 4.14618 4.21132 4.26770 4.37033 4.39731 4.46239 4.46901 4.54159 4.56689 4.61967 4.67451 4.71748 4.73492 4.78219 4.82239 4.88198 4.97175 4.98163 5.03007 5.05052 5.05472 5.13159 5.16013 5.23359 5.25085 5.34821 5.36338 5.39272 5.42913 5.48570 5.53945 5.56351 5.60412 5.68481 5.69290 5.75621 6.01991 6.33256 6.75152 6.96547 7.33391 7.55290 8.90497 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.020116 B = 0.002464 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.584530 B =11359.876706 C =12261.940636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.081 4.081 3 H 0.073 0.927 4 C -0.114 4.114 5 C -0.118 4.118 6 C -0.120 4.120 7 C -0.118 4.118 8 C -0.073 4.073 9 H 0.065 0.935 10 C -0.119 4.119 11 C 0.139 3.861 12 N -0.737 5.737 13 C 0.702 3.298 14 O -0.637 6.637 15 N -0.624 5.624 16 C 0.115 3.885 17 C -0.132 4.132 18 C 0.015 3.985 19 C -0.521 4.521 20 H 0.024 0.976 21 C 0.003 3.997 22 N -0.955 5.955 23 Si 0.955 3.045 24 H -0.259 1.259 25 H -0.305 1.305 26 H -0.233 1.233 27 C -0.107 4.107 28 C 0.135 3.865 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.047 0.953 43 H 0.060 0.940 44 H 0.407 0.593 45 H 0.085 0.915 46 H 0.100 0.900 47 H 0.050 0.950 48 H 0.054 0.946 49 H 0.035 0.965 50 H 0.264 0.736 51 H 0.037 0.963 52 H 0.066 0.934 53 H 0.080 0.920 54 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.280 0.820 -27.728 31.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.100 4.100 3 H 0.091 0.909 4 C -0.151 4.151 5 C -0.156 4.156 6 C -0.158 4.158 7 C -0.155 4.155 8 C -0.092 4.092 9 H 0.084 0.916 10 C -0.157 4.157 11 C 0.015 3.985 12 N -0.395 5.395 13 C 0.403 3.597 14 O -0.519 6.519 15 N -0.360 5.360 16 C -0.008 4.008 17 C -0.170 4.170 18 C -0.004 4.004 19 C -0.559 4.559 20 H 0.042 0.958 21 C -0.193 4.193 22 N -0.596 5.596 23 Si 0.780 3.220 24 H -0.185 1.185 25 H -0.233 1.233 26 H -0.156 1.156 27 C -0.146 4.146 28 C 0.012 3.988 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.246 0.754 45 H 0.103 0.897 46 H 0.118 0.882 47 H 0.069 0.931 48 H 0.072 0.928 49 H 0.053 0.947 50 H 0.073 0.927 51 H 0.056 0.944 52 H 0.084 0.916 53 H 0.098 0.902 54 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 14.554 0.126 -27.608 31.210 hybrid contribution -0.927 0.610 0.487 1.212 sum 13.627 0.735 -27.121 30.361 Atomic orbital electron populations 1.21925 0.95188 1.01779 1.02055 1.21096 0.95421 0.99537 0.93900 0.90893 1.21589 0.95514 1.00536 0.97477 1.21528 0.95624 1.00791 0.97627 1.21534 1.00319 0.99271 0.94664 1.21664 0.94942 1.01057 0.97851 1.21071 0.95356 0.99413 0.93381 0.91610 1.21870 1.02297 0.99603 0.91930 1.21301 0.98810 0.95596 0.82770 1.45252 1.61108 1.29224 1.03965 1.16022 0.79154 0.83141 0.81361 1.90844 1.52043 1.22541 1.86470 1.47342 1.58241 1.25184 1.05221 1.21908 0.92407 0.85606 1.00882 1.22297 0.96930 1.00462 0.97333 1.19084 0.94404 0.94741 0.92184 1.21393 1.08710 0.97260 1.28568 0.95751 1.26063 0.94369 1.03109 0.95807 1.70087 1.16522 1.31519 1.41438 0.85758 0.80897 0.77275 0.78031 1.18493 1.23298 1.15596 1.21722 0.95909 0.97814 0.99126 1.21501 0.96341 1.00429 0.80557 0.92179 0.92349 0.93098 0.91537 0.92395 0.91865 0.91758 0.91883 0.92460 0.91553 0.92503 0.90106 0.90238 0.93447 0.92220 0.75430 0.89697 0.88224 0.93141 0.92767 0.94686 0.92688 0.94418 0.91575 0.90207 0.90093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.85 71.98 0.64 -1.03 16 2 C -0.08 -0.87 2.25 -10.79 -0.02 -0.90 16 3 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 4 C -0.11 -1.18 5.20 30.60 0.16 -1.02 16 5 C -0.12 -1.20 5.92 30.59 0.18 -1.02 16 6 C -0.12 -1.41 5.92 30.59 0.18 -1.23 16 7 C -0.12 -1.50 4.96 30.61 0.15 -1.35 16 8 C -0.07 -0.92 1.72 -10.78 -0.02 -0.93 16 9 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 10 C -0.12 -1.58 4.58 30.60 0.14 -1.44 16 11 C 0.14 2.81 5.44 86.38 0.47 3.28 16 12 N -0.74 -17.32 5.46 -478.55 -2.62 -19.93 16 13 C 0.70 22.70 8.30 179.06 1.49 24.18 16 14 O -0.64 -25.44 15.77 -4.00 -0.06 -25.50 16 15 N -0.62 -19.66 2.97 -836.06 -2.48 -22.14 16 16 C 0.11 3.19 6.42 86.51 0.56 3.74 16 17 C -0.13 -4.97 4.86 30.82 0.15 -4.82 16 18 C 0.01 0.65 1.65 -11.51 -0.02 0.63 16 19 C -0.52 -29.32 9.14 25.60 0.23 -29.09 16 20 H 0.02 1.55 7.99 -2.91 -0.02 1.52 16 21 C 0.00 0.15 5.45 84.66 0.46 0.61 16 22 N -0.96 -59.57 13.96 21.45 0.30 -59.27 16 23 Si 0.95 42.15 24.38 68.60 1.67 43.82 16 24 H -0.26 -10.57 6.86 99.48 0.68 -9.89 16 25 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 26 H -0.23 -9.02 6.53 99.48 0.65 -8.37 16 27 C -0.11 -4.24 5.30 30.67 0.16 -4.07 16 28 C 0.13 4.47 6.44 86.36 0.56 5.03 16 29 H 0.06 0.66 6.32 -2.39 -0.02 0.64 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 38 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.06 0.85 6.57 -2.39 -0.02 0.83 16 40 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.08 1.01 6.17 -2.39 -0.01 0.99 16 42 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.06 1.29 6.57 -2.39 -0.02 1.27 16 44 H 0.41 7.42 5.96 -92.70 -0.55 6.87 16 45 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.10 2.06 5.64 -2.39 -0.01 2.05 16 47 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 48 H 0.05 2.08 3.24 -2.39 -0.01 2.07 16 49 H 0.04 1.50 7.20 -2.39 -0.02 1.48 16 50 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 51 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 52 H 0.07 2.58 8.14 -2.39 -0.02 2.57 16 53 H 0.08 2.76 6.99 -2.39 -0.02 2.74 16 54 H 0.08 2.36 8.14 -2.38 -0.02 2.35 16 Total: -1.00 -71.16 392.94 2.50 -68.66 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: 0.23 Total: 23.79 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 5.46 Total: -9.42 kcal Atomic # 7 Polarization: -96.55 SS G_CDS: -4.80 Total: -101.35 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.06 Total: -25.50 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 1.67 Total: 43.82 kcal Total: -71.16 2.50 -68.66 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541914610.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.466 kcal (2) G-P(sol) polarization free energy of solvation -71.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds