Wall clock time and date at job start Tue Mar 31 2020 13:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47214 * 2 1 4 4 N 1.46497 * 109.47275 * 120.00344 * 2 1 3 5 5 C 1.34778 * 120.00161 * 120.00052 * 4 2 1 6 6 O 1.21282 * 119.99731 * 179.97438 * 5 4 2 7 7 C 1.50698 * 120.00055 * 359.97438 * 5 4 2 8 8 N 1.46893 * 109.46966 * 180.02562 * 7 5 4 9 9 C 1.46848 * 111.00170 * 294.20462 * 8 7 5 10 10 C 1.53030 * 109.52800 * 174.16323 * 9 8 7 11 11 C 1.53120 * 109.27699 * 59.17994 * 10 9 8 12 12 C 1.50700 * 109.57403 * 182.40990 * 11 10 9 13 13 H 1.08006 * 119.99959 * 119.72038 * 12 11 10 14 14 C 1.37878 * 120.00087 * 299.71779 * 12 11 10 15 15 N 1.31510 * 119.99987 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00073 * 180.02562 * 14 12 11 17 17 H 1.48510 * 109.46984 * 59.99808 * 16 14 12 18 18 H 1.48497 * 109.47341 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46926 * 300.00245 * 16 14 12 20 20 C 1.53113 * 109.16545 * 302.34800 * 11 10 9 21 21 C 1.46855 * 111.00047 * 169.99877 * 8 7 5 22 22 C 1.46504 * 120.00065 * 299.99603 * 4 2 1 23 23 C 1.55238 * 110.46889 * 234.81118 * 22 4 2 24 24 C 1.54894 * 102.58338 * 203.39139 * 23 22 4 25 25 C 1.54266 * 104.31305 * 37.93170 * 24 23 22 26 26 C 1.53869 * 106.60031 * 336.32486 * 25 24 23 27 27 H 1.09003 * 109.46792 * 299.99737 * 1 2 3 28 28 H 1.09001 * 109.46943 * 59.99618 * 1 2 3 29 29 H 1.08997 * 109.46840 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46792 * 240.00263 * 2 1 3 31 31 H 1.08999 * 109.47211 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47478 * 300.00054 * 3 2 1 33 33 H 1.08998 * 109.47491 * 60.00457 * 3 2 1 34 34 H 1.09001 * 109.46580 * 300.00259 * 7 5 4 35 35 H 1.09000 * 109.47211 * 59.99968 * 7 5 4 36 36 H 1.09000 * 109.46551 * 294.18636 * 9 8 7 37 37 H 1.09009 * 109.45727 * 54.14847 * 9 8 7 38 38 H 1.09000 * 109.50371 * 299.24412 * 10 9 8 39 39 H 1.08997 * 109.50866 * 179.12286 * 10 9 8 40 40 H 1.09002 * 109.52153 * 62.25779 * 11 10 9 41 41 H 0.96997 * 119.99984 * 179.97438 * 15 14 12 42 42 H 1.09008 * 109.50220 * 297.71918 * 20 11 10 43 43 H 1.08999 * 109.50813 * 177.59241 * 20 11 10 44 44 H 1.08998 * 109.46013 * 305.85768 * 21 8 7 45 45 H 1.09001 * 109.45904 * 65.82978 * 21 8 7 46 46 H 1.09007 * 110.42957 * 357.46245 * 22 4 2 47 47 H 1.08996 * 110.89448 * 85.10703 * 23 22 4 48 48 H 1.08993 * 110.76342 * 321.62368 * 23 22 4 49 49 H 1.09002 * 110.48891 * 279.18596 * 24 23 22 50 50 H 1.08998 * 110.48494 * 156.67683 * 24 23 22 51 51 H 1.09001 * 110.03084 * 95.60669 * 25 24 23 52 52 H 1.08996 * 110.03108 * 216.98559 * 25 24 23 53 53 H 1.08999 * 110.04012 * 119.28327 * 26 25 24 54 54 H 1.09006 * 110.02998 * 240.67078 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.7933 -1.7865 1.0724 6 8 3.1979 -2.3579 2.0627 7 6 3.1569 -2.3016 -0.2963 8 7 4.0010 -3.4962 -0.1616 9 6 5.2950 -3.1604 0.4461 10 6 6.0874 -4.4439 0.7041 11 6 6.3006 -5.1813 -0.6208 12 6 7.0290 -6.4758 -0.3666 13 1 6.5680 -7.4159 -0.6316 14 6 8.2840 -6.4602 0.2043 15 7 8.8455 -5.3155 0.5266 16 14 9.1872 -8.0648 0.5188 17 1 9.3868 -8.7807 -0.7670 18 1 10.5073 -7.7773 1.1349 19 1 8.3854 -8.9122 1.4378 20 6 4.9394 -5.4764 -1.2566 21 6 4.1802 -4.1630 -1.4577 22 6 1.6646 -0.1902 2.5268 23 6 2.9435 0.0599 3.3704 24 6 2.4119 -0.0267 4.8227 25 6 1.3663 -1.1601 4.7793 26 6 0.8912 -1.2641 3.3195 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 2.2483 -2.5586 -0.8409 35 1 3.7016 -1.5310 -0.8417 36 1 5.8573 -2.5160 -0.2296 37 1 5.1290 -2.6402 1.3896 38 1 5.5319 -5.0828 1.3907 39 1 7.0541 -4.1933 1.1408 40 1 6.8896 -4.5581 -1.2938 41 1 9.7282 -5.3045 0.9286 42 1 4.3657 -6.1314 -0.6007 43 1 5.0859 -5.9633 -2.2207 44 1 3.2046 -4.3708 -1.8971 45 1 4.7479 -3.5140 -2.1245 46 1 1.0745 0.7227 2.4454 47 1 3.3554 1.0485 3.1682 48 1 3.6868 -0.7151 3.1843 49 1 1.9435 0.9134 5.1143 50 1 3.2194 -0.2787 5.5101 51 1 1.8214 -2.1000 5.0916 52 1 0.5261 -0.9181 5.4299 53 1 1.1156 -2.2544 2.9233 54 1 -0.1803 -1.0729 3.2611 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541948592.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:53 Heat of formation + Delta-G solvation = -60.914294 kcal Electronic energy + Delta-G solvation = -29495.694870 eV Core-core repulsion = 25851.917934 eV Total energy + Delta-G solvation = -3643.776936 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.60990 -39.69851 -38.03094 -37.13460 -35.62905 -33.28526 -32.35460 -31.43681 -29.90684 -29.63367 -28.06979 -27.95760 -26.28685 -23.78048 -23.46903 -22.68842 -22.10308 -21.30061 -20.36792 -19.29635 -18.42839 -18.09215 -17.39986 -16.68568 -16.47689 -16.22658 -16.14070 -15.50022 -15.34736 -14.93849 -14.81272 -14.75504 -14.49684 -14.39660 -14.13866 -13.90131 -13.85378 -13.42539 -13.17680 -13.04943 -12.87201 -12.82083 -12.58853 -12.45909 -12.41160 -12.37627 -12.08098 -12.02685 -12.00773 -11.94902 -11.89558 -11.78389 -11.72907 -11.34225 -11.25308 -10.81918 -10.77300 -10.40612 -10.20788 -9.52767 -9.14211 -8.07729 -6.21412 1.39520 1.42153 1.49330 1.73964 1.96787 2.43476 3.04829 3.18934 3.55885 3.71044 3.80348 3.86018 4.06672 4.14101 4.22966 4.26095 4.28423 4.35617 4.39056 4.40132 4.49954 4.56364 4.59316 4.59866 4.64725 4.76727 4.79139 4.82189 4.83908 4.91329 4.96464 5.00734 5.01616 5.05305 5.05922 5.10239 5.19284 5.23100 5.25724 5.31530 5.32737 5.37408 5.42113 5.52170 5.58217 5.61780 5.86994 5.98637 6.00378 6.20443 6.30239 6.40752 6.57073 6.90361 7.38137 7.46089 8.96805 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.016910 B = 0.003204 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.440564 B = 8736.041176 C = 9653.189377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.119 3.881 3 C -0.159 4.159 4 N -0.601 5.601 5 C 0.509 3.491 6 O -0.547 6.547 7 C 0.037 3.963 8 N -0.533 5.533 9 C 0.075 3.925 10 C -0.088 4.088 11 C 0.045 3.955 12 C -0.535 4.535 13 H 0.052 0.948 14 C 0.010 3.990 15 N -0.919 5.919 16 Si 0.954 3.046 17 H -0.268 1.268 18 H -0.284 1.284 19 H -0.274 1.274 20 C -0.100 4.100 21 C 0.068 3.932 22 C 0.152 3.848 23 C -0.143 4.143 24 C -0.115 4.115 25 C -0.117 4.117 26 C -0.129 4.129 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.051 0.949 30 H 0.098 0.902 31 H 0.045 0.955 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.126 0.874 35 H 0.071 0.929 36 H 0.011 0.989 37 H 0.066 0.934 38 H 0.018 0.982 39 H 0.055 0.945 40 H -0.008 1.008 41 H 0.259 0.741 42 H 0.045 0.955 43 H 0.060 0.940 44 H 0.097 0.903 45 H 0.030 0.970 46 H 0.118 0.882 47 H 0.071 0.929 48 H 0.053 0.947 49 H 0.088 0.912 50 H 0.054 0.946 51 H 0.038 0.962 52 H 0.081 0.919 53 H 0.043 0.957 54 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.743 17.947 -0.529 27.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.016 3.984 3 C -0.217 4.217 4 N -0.335 5.335 5 C 0.297 3.703 6 O -0.424 6.424 7 C -0.094 4.094 8 N -0.258 5.258 9 C -0.053 4.053 10 C -0.127 4.127 11 C 0.027 3.973 12 C -0.573 4.573 13 H 0.070 0.930 14 C -0.188 4.188 15 N -0.558 5.558 16 Si 0.780 3.220 17 H -0.193 1.193 18 H -0.209 1.209 19 H -0.200 1.200 20 C -0.137 4.137 21 C -0.060 4.060 22 C 0.049 3.951 23 C -0.182 4.182 24 C -0.153 4.153 25 C -0.155 4.155 26 C -0.167 4.167 27 H 0.082 0.918 28 H 0.106 0.894 29 H 0.070 0.930 30 H 0.116 0.884 31 H 0.064 0.936 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.143 0.857 35 H 0.088 0.912 36 H 0.029 0.971 37 H 0.084 0.916 38 H 0.037 0.963 39 H 0.073 0.927 40 H 0.010 0.990 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.115 0.885 45 H 0.048 0.952 46 H 0.136 0.864 47 H 0.089 0.911 48 H 0.072 0.928 49 H 0.106 0.894 50 H 0.073 0.927 51 H 0.057 0.943 52 H 0.099 0.901 53 H 0.062 0.938 54 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.612 17.385 0.359 26.966 hybrid contribution 1.604 -0.584 -0.070 1.709 sum -19.007 16.800 0.288 25.369 Atomic orbital electron populations 1.22136 0.93240 1.02453 1.03604 1.21495 0.95751 0.94086 0.87055 1.22152 1.00932 0.94921 1.03668 1.48207 1.50436 1.27390 1.07437 1.20796 0.78004 0.80006 0.91459 1.90671 1.53349 1.57878 1.40509 1.22112 0.99860 0.92870 0.94563 1.61598 1.15154 1.24724 1.24308 1.22010 0.88301 0.97043 0.97946 1.21332 0.97541 0.94563 0.99235 1.18659 0.91955 0.94228 0.92503 1.21586 1.01683 0.93607 1.40449 0.93008 1.25781 0.98323 0.99327 0.95373 1.70026 1.15964 1.26505 1.43351 0.85676 0.77602 0.80151 0.78614 1.19267 1.20907 1.19959 1.21536 0.96214 0.96320 0.99675 1.22108 1.00378 0.94993 0.88472 1.21965 0.95298 0.97016 0.80861 1.22947 0.98264 1.01208 0.95765 1.22232 0.98128 0.99189 0.95742 1.21998 0.98898 0.98273 0.96355 1.22399 0.99813 0.99108 0.95398 0.91802 0.89402 0.92967 0.88417 0.93630 0.89352 0.91700 0.85659 0.91164 0.97115 0.91602 0.96305 0.92654 0.99037 0.93165 0.93580 0.92110 0.88514 0.95167 0.86405 0.91070 0.92826 0.89387 0.92705 0.94299 0.90070 0.93789 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.19 71.98 0.66 -0.82 16 2 C 0.12 1.56 3.11 44.99 0.14 1.70 16 3 C -0.16 -1.70 9.18 71.98 0.66 -1.04 16 4 N -0.60 -12.44 2.41 -767.44 -1.85 -14.29 16 5 C 0.51 14.94 6.47 87.66 0.57 15.51 16 6 O -0.55 -21.26 10.69 -3.04 -0.03 -21.29 16 7 C 0.04 0.99 3.76 85.56 0.32 1.31 16 8 N -0.53 -19.81 4.40 -900.93 -3.96 -23.77 16 9 C 0.07 3.32 5.10 86.32 0.44 3.76 16 10 C -0.09 -4.73 5.12 30.64 0.16 -4.57 16 11 C 0.05 2.42 2.16 -11.46 -0.02 2.39 16 12 C -0.54 -31.34 8.56 25.60 0.22 -31.12 16 13 H 0.05 2.96 7.75 -2.91 -0.02 2.94 16 14 C 0.01 0.60 5.31 84.66 0.45 1.04 16 15 N -0.92 -56.05 11.37 21.45 0.24 -55.80 16 16 Si 0.95 45.84 29.54 68.60 2.03 47.87 16 17 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 19 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 20 C -0.10 -4.32 5.32 30.64 0.16 -4.16 16 21 C 0.07 2.35 5.46 86.32 0.47 2.82 16 22 C 0.15 2.95 2.41 46.19 0.11 3.06 16 23 C -0.14 -3.36 6.25 32.01 0.20 -3.16 16 24 C -0.12 -2.31 6.82 31.67 0.22 -2.10 16 25 C -0.12 -2.51 6.80 31.32 0.21 -2.29 16 26 C -0.13 -2.80 6.07 31.32 0.19 -2.61 16 27 H 0.06 0.56 7.13 -2.39 -0.02 0.55 16 28 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.10 1.19 5.77 -2.39 -0.01 1.18 16 31 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.06 0.63 7.01 -2.39 -0.02 0.62 16 34 H 0.13 2.59 7.63 -2.39 -0.02 2.57 16 35 H 0.07 1.70 7.77 -2.39 -0.02 1.68 16 36 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.07 3.04 5.78 -2.38 -0.01 3.03 16 38 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.05 3.31 6.18 -2.39 -0.01 3.30 16 40 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 41 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 42 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 43 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 44 H 0.10 2.64 8.01 -2.39 -0.02 2.62 16 45 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.12 1.59 6.18 -2.38 -0.01 1.58 16 47 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.05 1.75 5.74 -2.39 -0.01 1.74 16 49 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 50 H 0.05 1.20 8.14 -2.39 -0.02 1.19 16 51 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 52 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 53 H 0.04 1.29 6.34 -2.39 -0.02 1.28 16 54 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -72.78 396.68 2.43 -70.35 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.84 Total: 17.20 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: 5.16 Total: -20.28 kcal Atomic # 7 Polarization: -88.29 SS G_CDS: -5.57 Total: -93.86 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.03 Total: -21.29 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -72.78 2.43 -70.35 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541948592.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.440 kcal (2) G-P(sol) polarization free energy of solvation -72.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds