Wall clock time and date at job start Tue Mar 31 2020 15:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.46946 * 2 1 4 4 C 1.50697 * 109.46919 * 240.00012 * 2 1 3 5 5 O 1.21281 * 119.99764 * 234.18547 * 4 2 1 6 6 N 1.34775 * 120.00446 * 54.18630 * 4 2 1 7 7 C 1.46923 * 120.63454 * 205.26728 * 6 4 2 8 8 H 1.09000 * 109.59071 * 113.84014 * 7 6 4 9 9 C 1.53010 * 109.58391 * 353.41542 * 7 6 4 10 10 C 1.52759 * 109.00773 * 233.58522 * 7 6 4 11 11 C 1.53043 * 109.38249 * 305.58093 * 10 7 6 12 12 C 1.53049 * 109.53423 * 61.24293 * 11 10 7 13 13 C 1.46926 * 120.62757 * 25.53946 * 6 4 2 14 14 H 1.08999 * 109.59009 * 246.30096 * 13 6 4 15 15 C 1.53006 * 109.58699 * 6.58814 * 13 6 4 16 16 N 1.46905 * 109.46862 * 120.00086 * 2 1 3 17 17 C 1.46842 * 111.00027 * 307.54082 * 16 2 1 18 18 C 1.53038 * 109.52545 * 174.16232 * 17 16 2 19 19 C 1.53120 * 109.27356 * 59.17776 * 18 17 16 20 20 C 1.50698 * 109.51984 * 182.37657 * 19 18 17 21 21 H 1.08000 * 120.00429 * 359.87535 * 20 19 18 22 22 C 1.37879 * 120.00092 * 179.87588 * 20 19 18 23 23 N 1.31517 * 120.00012 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00037 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47028 * 90.00170 * 24 22 20 26 26 H 1.48504 * 109.46899 * 209.99724 * 24 22 20 27 27 H 1.48494 * 109.47072 * 329.99911 * 24 22 20 28 28 C 1.53107 * 109.21663 * 302.31656 * 19 18 17 29 29 C 1.46845 * 110.99424 * 183.33451 * 16 2 1 30 30 H 1.09004 * 109.46966 * 199.10083 * 1 2 3 31 31 H 1.08995 * 109.47027 * 319.09833 * 1 2 3 32 32 H 1.08997 * 109.47028 * 79.10083 * 1 2 3 33 33 H 1.08996 * 109.47270 * 56.82296 * 9 7 6 34 34 H 1.08999 * 109.47208 * 176.82446 * 9 7 6 35 35 H 1.09002 * 109.46959 * 296.82028 * 9 7 6 36 36 H 1.09001 * 109.56615 * 185.55085 * 10 7 6 37 37 H 1.08995 * 109.36539 * 65.49276 * 10 7 6 38 38 H 1.09002 * 109.46397 * 301.22584 * 11 10 7 39 39 H 1.08998 * 109.46430 * 181.25816 * 11 10 7 40 40 H 1.09001 * 109.49742 * 178.68330 * 12 11 10 41 41 H 1.08993 * 109.49645 * 58.58468 * 12 11 10 42 42 H 1.08995 * 109.47216 * 51.90269 * 15 13 6 43 43 H 1.08998 * 109.47151 * 171.90752 * 15 13 6 44 44 H 1.08997 * 109.46583 * 291.90013 * 15 13 6 45 45 H 1.09008 * 109.46401 * 54.14753 * 17 16 2 46 46 H 1.08995 * 109.46732 * 294.18403 * 17 16 2 47 47 H 1.08999 * 109.50099 * 299.24563 * 18 17 16 48 48 H 1.09001 * 109.50515 * 179.12251 * 18 17 16 49 49 H 1.09003 * 109.52205 * 62.25915 * 19 18 17 50 50 H 0.96995 * 120.00044 * 180.02562 * 23 22 20 51 51 H 1.08999 * 109.50795 * 177.63052 * 28 19 18 52 52 H 1.08998 * 109.50747 * 297.74271 * 28 19 18 53 53 H 1.08997 * 109.46239 * 305.84997 * 29 16 2 54 54 H 1.08998 * 109.46094 * 65.83735 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.8139 -1.6315 -1.1223 6 7 1.6130 -0.3223 -2.4511 7 6 1.6130 -1.2655 -3.5776 8 1 0.5871 -1.4637 -3.8882 9 6 2.2848 -2.5727 -3.1520 10 6 2.3867 -0.6498 -4.7420 11 6 1.7991 0.7242 -5.0723 12 6 1.9370 1.6451 -3.8578 13 6 1.1530 1.0539 -2.6820 14 1 0.0883 1.0489 -2.9156 15 6 1.3989 1.8942 -1.4272 16 7 2.0197 -0.6925 1.1995 17 6 1.4075 -0.1385 2.4138 18 6 1.8265 -0.9747 3.6251 19 6 3.3527 -0.9581 3.7472 20 6 3.7748 -1.8274 4.9035 21 1 3.0298 -2.3393 5.4945 22 6 5.1123 -1.9692 5.2072 23 7 6.0196 -1.3455 4.4879 24 14 5.6355 -3.0473 6.6401 25 1 5.8521 -4.4362 6.1614 26 1 6.8973 -2.5213 7.2203 27 1 4.5733 -3.0413 7.6778 28 6 3.9677 -1.4953 2.4520 29 6 3.4854 -0.6434 1.2739 30 1 -0.3633 -0.9711 0.3363 31 1 -0.3633 0.7767 0.6728 32 1 -0.3633 0.1943 -1.0091 33 1 1.7712 -2.9782 -2.2804 34 1 2.2336 -3.2907 -3.9705 35 1 3.3282 -2.3804 -2.9022 36 1 2.3092 -1.2979 -5.6150 37 1 3.4342 -0.5397 -4.4619 38 1 0.7450 0.6164 -5.3284 39 1 2.3358 1.1550 -5.9175 40 1 1.5396 2.6305 -4.1014 41 1 2.9888 1.7336 -3.5859 42 1 2.4377 1.7861 -1.1154 43 1 1.1921 2.9420 -1.6454 44 1 0.7419 1.5532 -0.6271 45 1 0.3221 -0.1599 2.3156 46 1 1.7392 0.8907 2.5507 47 1 1.4830 -2.0009 3.4951 48 1 1.3845 -0.5539 4.5283 49 1 3.6935 0.0634 3.9160 50 1 6.9605 -1.4455 4.7012 51 1 5.0546 -1.4463 2.5175 52 1 3.6579 -2.5297 2.3037 53 1 3.9093 -1.0317 0.3478 54 1 3.8074 0.3881 1.4164 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541951189.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:58 Heat of formation + Delta-G solvation = 3.544901 kcal Electronic energy + Delta-G solvation = -30236.257704 eV Core-core repulsion = 26595.275928 eV Total energy + Delta-G solvation = -3640.981775 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.26765 -39.77367 -38.30352 -36.93224 -35.08669 -33.80838 -33.31869 -31.69494 -30.78455 -29.82492 -27.50150 -27.22070 -25.96285 -24.26233 -23.49417 -22.57955 -22.55106 -21.51793 -20.40129 -19.97306 -18.46140 -17.56475 -17.21646 -16.84571 -16.62284 -16.45262 -15.69357 -15.54842 -15.28278 -14.99094 -14.83013 -14.72006 -14.43147 -14.28243 -14.06869 -13.96178 -13.71270 -13.45433 -13.33304 -13.06760 -12.84533 -12.83367 -12.78771 -12.71922 -12.46363 -12.31176 -12.26398 -12.00121 -11.98185 -11.82597 -11.74465 -11.70260 -11.46301 -11.39356 -11.15404 -10.76871 -10.76115 -10.39074 -9.96969 -9.39312 -8.92149 -8.07748 -6.21665 1.38633 1.40258 1.50220 1.61511 1.98216 2.42944 3.06021 3.18602 3.53175 3.78712 3.86633 3.91205 4.00072 4.07250 4.17630 4.23760 4.28260 4.29058 4.35713 4.40478 4.45316 4.57699 4.60636 4.61528 4.70104 4.73461 4.80581 4.85436 4.86924 4.90751 4.94213 5.00374 5.04472 5.07160 5.09790 5.13790 5.18974 5.21732 5.24887 5.25926 5.32127 5.36080 5.38404 5.51910 5.59367 5.63056 5.83948 5.99602 6.03075 6.26624 6.35133 6.40895 6.60193 6.90574 7.33268 7.45766 8.96697 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.022427 B = 0.003230 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.169183 B = 8667.162313 C = 9147.101954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.018 3.982 3 H 0.116 0.884 4 C 0.523 3.477 5 O -0.547 6.547 6 N -0.620 5.620 7 C 0.146 3.854 8 H 0.092 0.908 9 C -0.136 4.136 10 C -0.129 4.129 11 C -0.114 4.114 12 C -0.129 4.129 13 C 0.142 3.858 14 H 0.103 0.897 15 C -0.207 4.207 16 N -0.532 5.532 17 C 0.066 3.934 18 C -0.099 4.099 19 C 0.046 3.954 20 C -0.533 4.533 21 H 0.052 0.948 22 C 0.008 3.992 23 N -0.919 5.919 24 Si 0.955 3.045 25 H -0.279 1.279 26 H -0.282 1.282 27 H -0.265 1.265 28 C -0.087 4.087 29 C 0.068 3.932 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.037 0.963 34 H 0.066 0.934 35 H 0.045 0.955 36 H 0.088 0.912 37 H 0.042 0.958 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.100 0.900 41 H 0.045 0.955 42 H 0.041 0.959 43 H 0.096 0.904 44 H 0.106 0.894 45 H 0.099 0.901 46 H 0.026 0.974 47 H 0.045 0.955 48 H 0.059 0.941 49 H -0.010 1.010 50 H 0.259 0.741 51 H 0.054 0.946 52 H 0.017 0.983 53 H 0.072 0.928 54 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.323 9.214 -21.549 28.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.092 4.092 3 H 0.133 0.867 4 C 0.312 3.688 5 O -0.424 6.424 6 N -0.357 5.357 7 C 0.044 3.956 8 H 0.110 0.890 9 C -0.194 4.194 10 C -0.167 4.167 11 C -0.152 4.152 12 C -0.167 4.167 13 C 0.040 3.960 14 H 0.121 0.879 15 C -0.263 4.263 16 N -0.259 5.259 17 C -0.061 4.061 18 C -0.137 4.137 19 C 0.027 3.973 20 C -0.571 4.571 21 H 0.070 0.930 22 C -0.190 4.190 23 N -0.559 5.559 24 Si 0.781 3.219 25 H -0.205 1.205 26 H -0.207 1.207 27 H -0.189 1.189 28 C -0.126 4.126 29 C -0.059 4.059 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.106 0.894 37 H 0.061 0.939 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.118 0.882 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.114 0.886 44 H 0.124 0.876 45 H 0.117 0.883 46 H 0.045 0.955 47 H 0.063 0.937 48 H 0.078 0.922 49 H 0.008 0.992 50 H 0.068 0.932 51 H 0.072 0.928 52 H 0.036 0.964 53 H 0.090 0.910 54 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -14.864 8.258 -21.530 27.435 hybrid contribution 1.562 -0.127 1.122 1.928 sum -13.302 8.131 -20.408 25.681 Atomic orbital electron populations 1.21935 0.90183 1.03352 1.04153 1.23434 0.98636 0.98602 0.88499 0.86749 1.20830 0.79590 0.83273 0.85102 1.90672 1.32602 1.32380 1.86718 1.48257 1.66880 1.12634 1.07917 1.21221 1.00079 0.88329 0.85980 0.89020 1.22042 1.01107 0.96405 0.99824 1.21911 0.98886 0.98210 0.97693 1.21512 1.02281 0.93826 0.97552 1.21997 0.99959 1.00151 0.94577 1.21384 0.99588 0.79247 0.95756 0.87933 1.23458 1.01798 1.02203 0.98881 1.61635 1.06199 1.56160 1.01865 1.22132 0.99696 0.95364 0.88879 1.21537 0.96744 0.99103 0.96329 1.18655 0.91837 0.94100 0.92700 1.21615 0.92200 1.29016 1.14262 0.93008 1.25806 0.96915 0.97118 0.99141 1.70043 1.00875 1.44234 1.40763 0.85602 0.77764 0.78837 0.79730 1.20503 1.20738 1.18944 1.21348 1.00546 0.96404 0.94267 1.22132 0.87751 0.96465 0.99563 0.92335 0.89207 0.89152 0.94415 0.91569 0.93590 0.89382 0.93933 0.89902 0.90727 0.88200 0.93631 0.94034 0.88574 0.87650 0.88264 0.95544 0.93654 0.92240 0.99186 0.93210 0.92781 0.96413 0.90995 0.97681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 6.29 71.98 0.45 -2.27 16 2 C 0.02 0.51 1.49 44.17 0.07 0.58 16 3 H 0.12 2.93 3.78 -11.94 -0.05 2.89 16 4 C 0.52 16.00 5.82 87.66 0.51 16.51 16 5 O -0.55 -22.02 9.93 -3.03 -0.03 -22.05 16 6 N -0.62 -13.47 2.69 -772.10 -2.08 -15.55 16 7 C 0.15 2.88 3.48 44.83 0.16 3.04 16 8 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 9 C -0.14 -3.61 7.64 71.99 0.55 -3.06 16 10 C -0.13 -2.03 5.34 30.53 0.16 -1.87 16 11 C -0.11 -1.23 5.89 30.63 0.18 -1.05 16 12 C -0.13 -1.55 5.37 30.68 0.16 -1.39 16 13 C 0.14 1.98 2.41 44.98 0.11 2.09 16 14 H 0.10 0.93 7.76 -2.39 -0.02 0.91 16 15 C -0.21 -3.02 6.92 71.98 0.50 -2.52 16 16 N -0.53 -20.12 4.33 -875.24 -3.79 -23.91 16 17 C 0.07 2.34 5.11 86.33 0.44 2.78 16 18 C -0.10 -4.35 5.32 30.65 0.16 -4.19 16 19 C 0.05 2.47 2.16 -11.46 -0.02 2.45 16 20 C -0.53 -31.41 8.56 25.60 0.22 -31.19 16 21 H 0.05 2.99 7.74 -2.91 -0.02 2.96 16 22 C 0.01 0.48 5.30 84.65 0.45 0.93 16 23 N -0.92 -56.58 11.36 21.45 0.24 -56.34 16 24 Si 0.96 46.16 29.54 68.60 2.03 48.19 16 25 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 26 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 27 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 28 C -0.09 -4.75 5.13 30.69 0.16 -4.59 16 29 C 0.07 3.13 5.10 86.37 0.44 3.57 16 30 H 0.06 1.36 8.08 -2.39 -0.02 1.34 16 31 H 0.09 1.36 7.15 -2.39 -0.02 1.35 16 32 H 0.09 1.32 5.62 -2.39 -0.01 1.31 16 33 H 0.04 1.20 6.85 -2.39 -0.02 1.18 16 34 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.04 1.51 6.76 -2.39 -0.02 1.49 16 36 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.04 0.85 6.44 -2.39 -0.02 0.84 16 43 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.11 1.54 2.81 -2.39 -0.01 1.53 16 45 H 0.10 2.75 6.26 -2.38 -0.01 2.74 16 46 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 48 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 49 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 50 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 51 H 0.05 3.29 6.16 -2.39 -0.01 3.28 16 52 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 53 H 0.07 3.46 5.35 -2.39 -0.01 3.45 16 54 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 Total: -1.00 -74.56 377.68 1.89 -72.67 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.83 Total: 17.17 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: 4.69 Total: -20.18 kcal Atomic # 7 Polarization: -90.18 SS G_CDS: -5.62 Total: -95.80 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.03 Total: -22.05 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -74.56 1.89 -72.67 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541951189.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.217 kcal (2) G-P(sol) polarization free energy of solvation -74.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds