Wall clock time and date at job start Tue Mar 31 2020 15:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47391 * 2 1 4 4 C 1.50705 * 109.47035 * 240.00498 * 2 1 3 5 5 O 1.21288 * 119.99530 * 257.56949 * 4 2 1 6 6 N 1.34776 * 120.00133 * 77.56546 * 4 2 1 7 7 C 1.46914 * 120.62941 * 353.88291 * 6 4 2 8 8 H 1.08994 * 109.59336 * 6.62602 * 7 6 4 9 9 C 1.53002 * 109.58638 * 246.19637 * 7 6 4 10 10 C 1.53629 * 108.54475 * 126.36831 * 7 6 4 11 11 C 1.53042 * 109.24137 * 54.85184 * 10 7 6 12 12 C 1.53042 * 109.53898 * 298.51464 * 11 10 7 13 13 C 1.46929 * 120.62608 * 174.15861 * 6 4 2 14 14 H 1.09004 * 109.58365 * 113.65730 * 13 6 4 15 15 C 1.52991 * 109.58991 * 353.37726 * 13 6 4 16 16 N 1.46896 * 109.47298 * 120.00385 * 2 1 3 17 17 C 1.46852 * 110.99850 * 285.30049 * 16 2 1 18 18 C 1.53035 * 109.51150 * 185.84196 * 17 16 2 19 19 C 1.53112 * 109.27991 * 300.80085 * 18 17 16 20 20 C 1.50702 * 109.52406 * 177.57127 * 19 18 17 21 21 H 1.07997 * 120.00415 * 240.33031 * 20 19 18 22 22 C 1.37880 * 119.99981 * 60.32972 * 20 19 18 23 23 N 1.31522 * 119.99540 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00450 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.47013 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47185 * 119.99566 * 24 22 20 27 27 H 1.48501 * 109.47343 * 240.00163 * 24 22 20 28 28 C 1.53120 * 109.15348 * 57.67308 * 19 18 17 29 29 C 1.46849 * 110.99851 * 49.50674 * 16 2 1 30 30 H 1.09001 * 109.47582 * 181.39426 * 1 2 3 31 31 H 1.08995 * 109.47222 * 301.40018 * 1 2 3 32 32 H 1.09006 * 109.46942 * 61.39805 * 1 2 3 33 33 H 1.09003 * 109.46915 * 60.00095 * 9 7 6 34 34 H 1.09002 * 109.47553 * 179.97438 * 9 7 6 35 35 H 1.08996 * 109.47473 * 300.00509 * 9 7 6 36 36 H 1.09004 * 109.63179 * 294.86498 * 10 7 6 37 37 H 1.08999 * 109.43505 * 174.72166 * 10 7 6 38 38 H 1.08993 * 109.46119 * 178.49486 * 11 10 7 39 39 H 1.09005 * 109.44989 * 58.52587 * 11 10 7 40 40 H 1.09004 * 109.49744 * 301.41621 * 12 11 10 41 41 H 1.08995 * 109.49987 * 181.31361 * 12 11 10 42 42 H 1.09006 * 109.47699 * 66.13594 * 15 13 6 43 43 H 1.08999 * 109.47267 * 186.13595 * 15 13 6 44 44 H 1.09001 * 109.47260 * 306.13540 * 15 13 6 45 45 H 1.08999 * 109.46241 * 305.85256 * 17 16 2 46 46 H 1.09003 * 109.46264 * 65.82905 * 17 16 2 47 47 H 1.08995 * 109.50440 * 60.75880 * 18 17 16 48 48 H 1.09003 * 109.49871 * 180.86969 * 18 17 16 49 49 H 1.09005 * 109.58996 * 297.73404 * 19 18 17 50 50 H 0.97006 * 119.99217 * 180.02562 * 23 22 20 51 51 H 1.08998 * 109.50862 * 182.39354 * 28 19 18 52 52 H 1.09004 * 109.53179 * 62.29804 * 28 19 18 53 53 H 1.08999 * 109.46532 * 294.17953 * 29 16 2 54 54 H 1.08997 * 109.46252 * 54.15633 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.4476 -1.8469 -1.1476 6 7 2.0200 -0.0827 -2.4232 7 6 1.3987 1.2409 -2.5661 8 1 1.1031 1.6137 -1.5855 9 6 0.1688 1.1353 -3.4700 10 6 2.4241 2.1967 -3.1949 11 6 2.9339 1.5970 -4.5074 12 6 3.6291 0.2632 -4.2247 13 6 2.6224 -0.7119 -3.6064 14 1 1.8436 -0.9456 -4.3324 15 6 3.3411 -1.9979 -3.1937 16 7 2.0197 -0.6925 1.1993 17 6 1.8541 0.1442 2.3947 18 6 2.5044 -0.5459 3.5958 19 6 1.8469 -1.9117 3.8113 20 6 2.5233 -2.6214 4.9558 21 1 3.0080 -3.5723 4.7908 22 6 2.5233 -2.0568 6.2137 23 7 1.9326 -0.8990 6.4147 24 14 3.3623 -2.9360 7.6322 25 1 3.9472 -4.2120 7.1472 26 1 4.4399 -2.0740 8.1810 27 1 2.3665 -3.2214 8.6962 28 6 1.9911 -2.7456 2.5353 29 6 1.3558 -1.9919 1.3646 30 1 -0.3634 -1.0273 0.0250 31 1 -0.3633 0.5354 0.8771 32 1 -0.3633 0.4920 -0.9023 33 1 -0.5488 0.4441 -3.0278 34 1 -0.2910 2.1181 -3.5744 35 1 0.4694 0.7683 -4.4513 36 1 3.2606 2.3382 -2.5105 37 1 1.9497 3.1576 -3.3940 38 1 3.6417 2.2846 -4.9700 39 1 2.0935 1.4326 -5.1819 40 1 4.4542 0.4230 -3.5306 41 1 4.0124 -0.1520 -5.1568 42 1 2.6098 -2.7265 -2.8434 43 1 3.8780 -2.4052 -4.0504 44 1 4.0475 -1.7785 -2.3931 45 1 2.3296 1.1111 2.2300 46 1 0.7919 0.2907 2.5912 47 1 3.5692 -0.6803 3.4057 48 1 2.3679 0.0681 4.4861 49 1 0.7898 -1.7763 4.0405 50 1 1.9330 -0.5016 7.2997 51 1 1.4878 -3.7034 2.6675 52 1 3.0477 -2.9153 2.3283 53 1 0.2960 -1.8354 1.5658 54 1 1.4696 -2.5766 0.4518 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541951192.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:02 Heat of formation + Delta-G solvation = -46.113430 kcal Electronic energy + Delta-G solvation = -29935.377504 eV Core-core repulsion = 26292.242382 eV Total energy + Delta-G solvation = -3643.135122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.93660 -39.97833 -38.39871 -36.27849 -34.64415 -33.79763 -33.38813 -31.55301 -30.59291 -29.87312 -27.50456 -27.39090 -25.67836 -24.38509 -23.83709 -23.46771 -22.45728 -21.33506 -20.12306 -19.18215 -18.46396 -17.77229 -17.25026 -16.71080 -16.50242 -16.04316 -15.89015 -15.64200 -15.23886 -14.98203 -14.87502 -14.76775 -14.58943 -14.18483 -14.10704 -13.97472 -13.75928 -13.57959 -13.18924 -13.03877 -12.96703 -12.89079 -12.73761 -12.68678 -12.64115 -12.51124 -12.39593 -12.17975 -11.99466 -11.96775 -11.73699 -11.69788 -11.46235 -11.36407 -11.26204 -10.86151 -10.66519 -10.39392 -9.86148 -9.46904 -9.05975 -8.08113 -6.20751 1.38880 1.40504 1.52487 1.69857 1.95460 2.43769 3.06422 3.18298 3.49968 3.76136 3.90160 3.96874 4.01755 4.05861 4.07963 4.24070 4.27528 4.31580 4.37837 4.43688 4.45935 4.54788 4.57575 4.61045 4.66826 4.73275 4.74363 4.83888 4.86831 4.92149 4.93902 4.99736 5.04540 5.10184 5.12582 5.14839 5.18071 5.19810 5.25087 5.26450 5.33158 5.34127 5.44601 5.55387 5.58428 5.62674 5.80772 6.00118 6.02568 6.24121 6.31904 6.42381 6.55688 6.89067 7.35583 7.46205 8.96583 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.025123 B = 0.002997 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.261118 B = 9341.655295 C = 9703.119698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.062 3.938 3 H 0.114 0.886 4 C 0.521 3.479 5 O -0.550 6.550 6 N -0.602 5.602 7 C 0.121 3.879 8 H 0.097 0.903 9 C -0.160 4.160 10 C -0.128 4.128 11 C -0.116 4.116 12 C -0.127 4.127 13 C 0.144 3.856 14 H 0.082 0.918 15 C -0.130 4.130 16 N -0.527 5.527 17 C 0.070 3.930 18 C -0.093 4.093 19 C 0.048 3.952 20 C -0.534 4.534 21 H 0.044 0.956 22 C 0.014 3.986 23 N -0.914 5.914 24 Si 0.953 3.047 25 H -0.272 1.272 26 H -0.278 1.278 27 H -0.278 1.278 28 C -0.097 4.097 29 C 0.068 3.932 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.097 0.903 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.049 0.951 41 H 0.086 0.914 42 H 0.053 0.947 43 H 0.058 0.942 44 H 0.036 0.964 45 H 0.078 0.922 46 H 0.027 0.973 47 H 0.024 0.976 48 H 0.067 0.933 49 H -0.008 1.008 50 H 0.261 0.739 51 H 0.045 0.955 52 H 0.038 0.962 53 H 0.025 0.975 54 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.111 10.288 -25.612 27.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.050 4.050 3 H 0.132 0.868 4 C 0.310 3.690 5 O -0.428 6.428 6 N -0.337 5.337 7 C 0.019 3.981 8 H 0.115 0.885 9 C -0.218 4.218 10 C -0.166 4.166 11 C -0.154 4.154 12 C -0.165 4.165 13 C 0.041 3.959 14 H 0.100 0.900 15 C -0.188 4.188 16 N -0.252 5.252 17 C -0.057 4.057 18 C -0.132 4.132 19 C 0.029 3.971 20 C -0.573 4.573 21 H 0.062 0.938 22 C -0.184 4.184 23 N -0.554 5.554 24 Si 0.779 3.221 25 H -0.197 1.197 26 H -0.204 1.204 27 H -0.204 1.204 28 C -0.135 4.135 29 C -0.059 4.059 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.115 0.885 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.068 0.932 41 H 0.105 0.895 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.055 0.945 45 H 0.096 0.904 46 H 0.045 0.955 47 H 0.043 0.957 48 H 0.085 0.915 49 H 0.010 0.990 50 H 0.070 0.930 51 H 0.063 0.937 52 H 0.057 0.943 53 H 0.043 0.957 54 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.413 9.714 -25.489 27.384 hybrid contribution -0.254 -0.570 1.516 1.640 sum -2.666 9.144 -23.973 25.796 Atomic orbital electron populations 1.22410 0.94023 1.02864 1.04199 1.21755 0.95349 0.98675 0.89214 0.86794 1.20658 0.77540 0.86227 0.84618 1.90692 1.47262 1.19352 1.85481 1.48304 1.57599 1.19873 1.07885 1.21738 0.93630 0.81522 1.01215 0.88516 1.22173 0.96159 1.03538 0.99932 1.22018 0.98424 0.98877 0.97326 1.21545 1.00856 0.95711 0.97264 1.21975 0.97451 0.96102 1.00981 1.21298 0.95270 0.92738 0.86558 0.90042 1.22033 1.00347 0.96951 0.99428 1.61797 1.57743 1.03620 1.02038 1.22087 0.98249 0.95782 0.89568 1.21399 0.97324 0.98551 0.95900 1.18633 0.94053 0.92865 0.91527 1.21589 1.35316 1.05575 0.94779 0.93764 1.25705 0.96025 0.95750 1.00948 1.70008 1.44814 1.17933 1.22654 0.85590 0.78437 0.78760 0.79359 1.19703 1.20366 1.20379 1.21509 0.99138 0.97740 0.95074 1.22122 0.94424 0.90490 0.98873 0.92961 0.91231 0.88911 0.93006 0.89198 0.91444 0.92604 0.88463 0.90617 0.90259 0.93193 0.89503 0.92785 0.92357 0.94470 0.90397 0.95489 0.95710 0.91499 0.98965 0.92996 0.93651 0.94300 0.95737 0.89900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.16 8.05 71.98 0.58 -3.58 16 2 C 0.06 1.73 1.84 44.17 0.08 1.81 16 3 H 0.11 2.72 6.75 -2.39 -0.02 2.70 16 4 C 0.52 15.05 6.68 87.66 0.59 15.63 16 5 O -0.55 -20.13 9.66 -3.05 -0.03 -20.16 16 6 N -0.60 -12.49 2.68 -770.54 -2.06 -14.55 16 7 C 0.12 1.66 2.41 45.12 0.11 1.77 16 8 H 0.10 1.31 4.80 -2.39 -0.01 1.29 16 9 C -0.16 -1.60 8.76 71.98 0.63 -0.97 16 10 C -0.13 -1.41 5.58 30.82 0.17 -1.23 16 11 C -0.12 -1.17 5.68 30.62 0.17 -0.99 16 12 C -0.13 -1.83 5.37 30.67 0.16 -1.67 16 13 C 0.14 2.73 3.07 44.97 0.14 2.87 16 14 H 0.08 1.33 7.49 -2.38 -0.02 1.31 16 15 C -0.13 -3.26 7.61 71.98 0.55 -2.71 16 16 N -0.53 -19.73 4.40 -875.50 -3.85 -23.59 16 17 C 0.07 2.77 5.20 86.32 0.45 3.21 16 18 C -0.09 -4.66 5.12 30.64 0.16 -4.50 16 19 C 0.05 2.56 2.16 -11.46 -0.02 2.54 16 20 C -0.53 -31.42 8.56 25.60 0.22 -31.20 16 21 H 0.04 2.61 7.74 -2.91 -0.02 2.59 16 22 C 0.01 0.82 5.31 84.65 0.45 1.26 16 23 N -0.91 -53.80 11.37 21.45 0.24 -53.56 16 24 Si 0.95 45.40 29.54 68.60 2.03 47.43 16 25 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 26 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 27 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 28 C -0.10 -4.61 5.32 30.65 0.16 -4.45 16 29 C 0.07 2.77 4.23 86.32 0.37 3.13 16 30 H 0.05 1.42 6.35 -2.39 -0.02 1.40 16 31 H 0.07 1.66 7.06 -2.39 -0.02 1.65 16 32 H 0.09 1.59 5.39 -2.38 -0.01 1.57 16 33 H 0.05 0.63 7.34 -2.39 -0.02 0.62 16 34 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.07 0.63 5.71 -2.39 -0.01 0.62 16 36 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.08 0.62 6.49 -2.38 -0.02 0.60 16 40 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.05 1.61 6.56 -2.38 -0.02 1.60 16 43 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.04 1.15 6.94 -2.39 -0.02 1.13 16 45 H 0.08 2.67 7.97 -2.39 -0.02 2.65 16 46 H 0.03 1.05 7.08 -2.39 -0.02 1.03 16 47 H 0.02 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.07 3.67 6.18 -2.39 -0.01 3.65 16 49 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 50 H 0.26 14.49 8.31 -92.70 -0.77 13.72 16 51 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 52 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 53 H 0.02 0.97 6.55 -2.39 -0.02 0.95 16 54 H 0.08 3.40 5.65 -2.39 -0.01 3.39 16 Total: -1.00 -69.22 379.84 2.15 -67.07 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.87 Total: 16.43 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: 4.96 Total: -19.07 kcal Atomic # 7 Polarization: -86.03 SS G_CDS: -5.67 Total: -91.70 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.03 Total: -20.16 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -69.22 2.15 -67.07 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541951192.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.959 kcal (2) G-P(sol) polarization free energy of solvation -69.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds