Wall clock time and date at job start Tue Mar 31 2020 15:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47331 * 2 1 4 4 C 1.50703 * 109.47064 * 239.99638 * 2 1 3 5 5 O 1.21278 * 120.00035 * 242.80069 * 4 2 1 6 6 N 1.34770 * 119.99843 * 63.07493 * 4 2 1 7 7 C 1.46927 * 120.63310 * 184.18904 * 6 4 2 8 8 H 1.09004 * 109.58677 * 246.20377 * 7 6 4 9 9 C 1.53010 * 109.58346 * 6.62175 * 7 6 4 10 10 C 1.53619 * 108.54936 * 126.36426 * 7 6 4 11 11 C 1.53043 * 109.23934 * 54.85811 * 10 7 6 12 12 C 1.53044 * 109.53789 * 298.51233 * 11 10 7 13 13 C 1.46932 * 120.63170 * 4.46419 * 6 4 2 14 14 H 1.08996 * 109.58122 * 353.37250 * 13 6 4 15 15 C 1.52993 * 109.58427 * 113.65677 * 13 6 4 16 16 N 1.46907 * 109.46961 * 120.00010 * 2 1 3 17 17 C 1.46851 * 110.99840 * 59.20592 * 16 2 1 18 18 C 1.53037 * 109.52083 * 174.15810 * 17 16 2 19 19 C 1.53123 * 109.27652 * 59.18161 * 18 17 16 20 20 C 1.50693 * 109.52461 * 182.43497 * 19 18 17 21 21 H 1.08007 * 120.00160 * 119.68078 * 20 19 18 22 22 C 1.37883 * 120.00588 * 299.68554 * 20 19 18 23 23 N 1.31510 * 119.99218 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00297 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46988 * 59.99982 * 24 22 20 26 26 H 1.48501 * 109.47104 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47066 * 300.00175 * 24 22 20 28 28 C 1.53123 * 109.16104 * 302.34653 * 19 18 17 29 29 C 1.46841 * 110.99888 * 294.99828 * 16 2 1 30 30 H 1.08996 * 109.46898 * 65.18373 * 1 2 3 31 31 H 1.08997 * 109.47580 * 185.18587 * 1 2 3 32 32 H 1.09001 * 109.47235 * 305.19036 * 1 2 3 33 33 H 1.08995 * 109.46810 * 52.58734 * 9 7 6 34 34 H 1.09003 * 109.46915 * 172.58343 * 9 7 6 35 35 H 1.08995 * 109.46839 * 292.58303 * 9 7 6 36 36 H 1.08998 * 109.63566 * 294.87003 * 10 7 6 37 37 H 1.08998 * 109.45874 * 174.73781 * 10 7 6 38 38 H 1.08996 * 109.45893 * 178.49182 * 11 10 7 39 39 H 1.09001 * 109.46346 * 58.52808 * 11 10 7 40 40 H 1.09002 * 109.49339 * 301.41490 * 12 11 10 41 41 H 1.08997 * 109.52564 * 181.33753 * 12 11 10 42 42 H 1.09003 * 109.47105 * 60.00348 * 15 13 6 43 43 H 1.09004 * 109.47029 * 180.02562 * 15 13 6 44 44 H 1.08994 * 109.47440 * 299.99750 * 15 13 6 45 45 H 1.08995 * 109.46295 * 294.17740 * 17 16 2 46 46 H 1.08999 * 109.46455 * 54.14947 * 17 16 2 47 47 H 1.08996 * 109.50670 * 299.24327 * 18 17 16 48 48 H 1.08996 * 109.50391 * 179.11647 * 18 17 16 49 49 H 1.09006 * 109.52347 * 62.24547 * 19 18 17 50 50 H 0.97004 * 119.99307 * 179.97438 * 23 22 20 51 51 H 1.09004 * 109.49836 * 297.70883 * 28 19 18 52 52 H 1.08997 * 109.50156 * 177.59882 * 28 19 18 53 53 H 1.09000 * 109.46467 * 305.85695 * 29 16 2 54 54 H 1.09007 * 109.46413 * 65.82036 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.6871 -1.7253 -1.1198 6 7 1.7586 -0.2151 -2.4535 7 6 2.1621 -0.9438 -3.6639 8 1 2.9195 -0.3715 -4.1996 9 6 2.7282 -2.3109 -3.2746 10 6 0.9258 -1.1313 -4.5563 11 6 0.2882 0.2332 -4.8279 12 6 -0.1626 0.8597 -3.5063 13 6 1.0564 1.0670 -2.6020 14 1 0.7299 1.4201 -1.6239 15 6 1.9966 2.0968 -3.2316 16 7 2.0196 -0.6925 1.1995 17 6 1.5333 -2.0775 1.2429 18 6 2.1775 -2.8090 2.4227 19 6 1.8221 -2.0825 3.7229 20 6 2.5026 -2.7632 4.8824 21 1 3.2037 -2.2152 5.4945 22 6 2.2303 -4.0856 5.1620 23 7 1.3762 -4.7527 4.4169 24 14 3.0743 -4.9296 6.5988 25 1 2.7355 -4.2196 7.8583 26 1 2.6129 -6.3384 6.6859 27 1 4.5450 -4.9015 6.3949 28 6 2.2964 -0.6293 3.6325 29 6 1.6488 0.0389 2.4176 30 1 -0.3633 0.4313 -0.9327 31 1 -0.3634 -1.0234 0.0929 32 1 -0.3634 0.5922 0.8399 33 1 2.0159 -2.8299 -2.6334 34 1 2.9041 -2.9008 -4.1742 35 1 3.6679 -2.1759 -2.7392 36 1 0.2051 -1.7758 -4.0530 37 1 1.2250 -1.5873 -5.5000 38 1 -0.5739 0.1073 -5.4828 39 1 1.0172 0.8855 -5.3088 40 1 -0.8730 0.1963 -3.0130 41 1 -0.6380 1.8208 -3.7022 42 1 2.3179 1.7441 -4.2116 43 1 1.4740 3.0472 -3.3404 44 1 2.8677 2.2330 -2.5909 45 1 0.4499 -2.0784 1.3628 46 1 1.7962 -2.5841 0.3143 47 1 3.2601 -2.8204 2.2966 48 1 1.8044 -3.8322 2.4640 49 1 0.7421 -2.1046 3.8691 50 1 1.1849 -5.6832 4.6133 51 1 3.3809 -0.6066 3.5254 52 1 2.0084 -0.0956 4.5382 53 1 1.9956 1.0695 2.3422 54 1 0.5648 0.0281 2.5320 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541951194.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:06 Heat of formation + Delta-G solvation = -39.381629 kcal Electronic energy + Delta-G solvation = -30100.910956 eV Core-core repulsion = 26458.067747 eV Total energy + Delta-G solvation = -3642.843209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.02224 -39.94784 -38.42038 -36.30617 -34.66540 -33.81338 -33.39696 -31.42712 -30.77819 -29.71975 -27.67214 -27.27992 -25.74144 -24.27849 -23.82705 -23.46465 -22.47593 -21.43347 -20.12131 -19.17164 -18.41018 -17.84762 -17.17180 -16.68061 -16.53745 -16.13518 -15.92725 -15.54808 -15.27211 -15.00382 -14.93253 -14.76320 -14.59633 -14.26954 -14.13798 -13.86931 -13.69957 -13.60097 -13.30434 -13.04552 -12.92998 -12.85523 -12.77391 -12.68277 -12.56829 -12.46811 -12.34276 -12.31459 -11.97675 -11.95643 -11.70975 -11.66775 -11.46327 -11.31370 -11.22665 -10.80167 -10.70908 -10.38517 -9.81857 -9.45887 -9.06227 -8.07401 -6.21133 1.39127 1.41882 1.49057 1.70172 1.94549 2.43382 3.05877 3.19081 3.49056 3.76718 3.89369 3.96099 4.02711 4.05743 4.08201 4.23394 4.27874 4.31984 4.36270 4.43254 4.45782 4.50045 4.59907 4.65443 4.68322 4.72466 4.74250 4.84068 4.88545 4.92732 4.98843 5.02445 5.04688 5.06633 5.11601 5.17114 5.19158 5.22476 5.25442 5.26155 5.31652 5.34786 5.42418 5.57612 5.60006 5.63519 5.80214 5.99727 6.02303 6.23937 6.33177 6.41336 6.56770 6.90862 7.35712 7.46184 8.96996 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.023987 B = 0.003162 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.037157 B = 8852.406024 C = 9395.770493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.063 3.937 3 H 0.125 0.875 4 C 0.514 3.486 5 O -0.550 6.550 6 N -0.601 5.601 7 C 0.144 3.856 8 H 0.082 0.918 9 C -0.129 4.129 10 C -0.127 4.127 11 C -0.116 4.116 12 C -0.129 4.129 13 C 0.116 3.884 14 H 0.105 0.895 15 C -0.160 4.160 16 N -0.526 5.526 17 C 0.066 3.934 18 C -0.088 4.088 19 C 0.047 3.953 20 C -0.535 4.535 21 H 0.051 0.949 22 C 0.009 3.991 23 N -0.919 5.919 24 Si 0.955 3.045 25 H -0.268 1.268 26 H -0.284 1.284 27 H -0.274 1.274 28 C -0.099 4.099 29 C 0.066 3.934 30 H 0.097 0.903 31 H 0.040 0.960 32 H 0.078 0.922 33 H 0.037 0.963 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.049 0.951 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.100 0.900 42 H 0.064 0.936 43 H 0.091 0.909 44 H 0.048 0.952 45 H 0.011 0.989 46 H 0.076 0.924 47 H 0.017 0.983 48 H 0.053 0.947 49 H -0.010 1.010 50 H 0.259 0.741 51 H 0.045 0.955 52 H 0.059 0.941 53 H 0.094 0.906 54 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.573 17.019 -21.828 28.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.049 4.049 3 H 0.143 0.857 4 C 0.303 3.697 5 O -0.428 6.428 6 N -0.335 5.335 7 C 0.041 3.959 8 H 0.099 0.901 9 C -0.187 4.187 10 C -0.165 4.165 11 C -0.154 4.154 12 C -0.167 4.167 13 C 0.014 3.986 14 H 0.123 0.877 15 C -0.218 4.218 16 N -0.250 5.250 17 C -0.062 4.062 18 C -0.127 4.127 19 C 0.028 3.972 20 C -0.573 4.573 21 H 0.070 0.930 22 C -0.189 4.189 23 N -0.558 5.558 24 Si 0.780 3.220 25 H -0.193 1.193 26 H -0.209 1.209 27 H -0.199 1.199 28 C -0.137 4.137 29 C -0.061 4.061 30 H 0.116 0.884 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.119 0.881 42 H 0.083 0.917 43 H 0.109 0.891 44 H 0.067 0.933 45 H 0.029 0.971 46 H 0.095 0.905 47 H 0.036 0.964 48 H 0.072 0.928 49 H 0.008 0.992 50 H 0.068 0.932 51 H 0.064 0.936 52 H 0.078 0.922 53 H 0.113 0.887 54 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -3.789 16.290 -21.803 27.479 hybrid contribution -0.366 -1.276 1.170 1.770 sum -4.155 15.014 -20.633 25.854 Atomic orbital electron populations 1.22583 0.94382 1.02501 1.04815 1.21761 0.95028 0.99165 0.88906 0.85741 1.20764 0.79296 0.84623 0.85057 1.90717 1.39703 1.26246 1.86096 1.48301 1.58077 1.22721 1.04436 1.21385 0.96751 0.92505 0.85239 0.90051 1.22017 1.01304 0.95969 0.99377 1.22047 0.96260 0.98715 0.99463 1.21541 1.01229 0.95378 0.97205 1.21967 0.96214 1.02666 0.95836 1.21802 0.92812 0.82420 1.01534 0.87697 1.22157 0.99421 0.98939 1.01267 1.61860 1.59776 1.01934 1.01447 1.22192 0.94958 0.89245 0.99788 1.21338 0.97140 0.99824 0.94371 1.18644 0.93861 0.91928 0.92765 1.21589 1.25286 0.96715 1.13685 0.93028 1.25796 0.95827 0.98213 0.99078 1.70039 1.35664 1.09956 1.40177 0.85667 0.78888 0.77414 0.80014 1.19280 1.20937 1.19925 1.21537 0.99514 0.96418 0.96264 1.22106 0.97586 0.97500 0.88879 0.88418 0.94067 0.90286 0.94425 0.92401 0.93263 0.93184 0.89630 0.90528 0.90291 0.92374 0.88142 0.91702 0.89069 0.93265 0.97059 0.90549 0.96410 0.92845 0.99216 0.93206 0.93589 0.92225 0.88746 0.94969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.30 8.03 71.98 0.58 -3.72 16 2 C 0.06 1.75 1.93 44.17 0.09 1.83 16 3 H 0.13 2.75 7.54 -2.39 -0.02 2.73 16 4 C 0.51 15.45 6.59 87.66 0.58 16.03 16 5 O -0.55 -21.60 9.32 -3.02 -0.03 -21.63 16 6 N -0.60 -12.86 2.67 -770.53 -2.06 -14.92 16 7 C 0.14 2.89 3.10 45.12 0.14 3.03 16 8 H 0.08 1.43 7.49 -2.38 -0.02 1.41 16 9 C -0.13 -3.49 7.62 71.99 0.55 -2.94 16 10 C -0.13 -1.91 5.40 30.82 0.17 -1.74 16 11 C -0.12 -1.17 5.68 30.62 0.17 -0.99 16 12 C -0.13 -1.32 5.30 30.67 0.16 -1.16 16 13 C 0.12 1.57 2.24 44.97 0.10 1.67 16 14 H 0.11 1.32 4.36 -2.39 -0.01 1.31 16 15 C -0.16 -1.65 9.03 71.98 0.65 -1.00 16 16 N -0.53 -19.67 4.45 -875.51 -3.90 -23.57 16 17 C 0.07 2.95 4.49 86.32 0.39 3.34 16 18 C -0.09 -4.77 5.12 30.65 0.16 -4.62 16 19 C 0.05 2.51 2.16 -11.46 -0.02 2.49 16 20 C -0.53 -31.45 8.56 25.60 0.22 -31.23 16 21 H 0.05 2.96 7.75 -2.91 -0.02 2.94 16 22 C 0.01 0.53 5.31 84.66 0.45 0.98 16 23 N -0.92 -56.39 11.37 21.45 0.24 -56.15 16 24 Si 0.95 46.05 29.54 68.60 2.03 48.08 16 25 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 26 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 27 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 28 C -0.10 -4.34 5.32 30.65 0.16 -4.18 16 29 C 0.07 2.33 5.03 86.33 0.43 2.76 16 30 H 0.10 1.65 4.52 -2.39 -0.01 1.64 16 31 H 0.04 1.20 6.25 -2.39 -0.01 1.19 16 32 H 0.08 1.70 6.92 -2.39 -0.02 1.68 16 33 H 0.04 1.23 6.80 -2.39 -0.02 1.22 16 34 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.05 1.60 6.69 -2.39 -0.02 1.58 16 36 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.08 0.63 6.50 -2.39 -0.02 0.62 16 40 H 0.06 0.75 7.54 -2.39 -0.02 0.73 16 41 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.06 0.64 5.73 -2.39 -0.01 0.63 16 43 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.01 0.51 6.50 -2.39 -0.02 0.50 16 46 H 0.08 3.62 5.22 -2.39 -0.01 3.60 16 47 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.05 3.23 6.17 -2.39 -0.01 3.22 16 49 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 50 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 51 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 52 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 53 H 0.09 2.62 8.08 -2.39 -0.02 2.60 16 54 H 0.03 1.10 6.85 -2.38 -0.02 1.09 16 Total: -1.00 -72.95 378.31 2.12 -70.83 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.87 Total: 16.81 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: 4.97 Total: -19.45 kcal Atomic # 7 Polarization: -88.93 SS G_CDS: -5.72 Total: -94.64 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.03 Total: -21.63 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -72.95 2.12 -70.83 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541951194.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.451 kcal (2) G-P(sol) polarization free energy of solvation -72.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds