Wall clock time and date at job start Tue Mar 31 2020 15:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47592 * 2 1 4 4 C 1.50706 * 109.47244 * 120.00113 * 2 1 3 5 5 O 1.21280 * 119.99897 * 124.72136 * 4 2 1 6 6 N 1.34773 * 119.99712 * 304.72577 * 4 2 1 7 7 C 1.46926 * 120.63443 * 334.55524 * 6 4 2 8 8 H 1.08992 * 109.58879 * 113.84247 * 7 6 4 9 9 C 1.53002 * 109.58498 * 353.42101 * 7 6 4 10 10 C 1.52758 * 109.01055 * 233.58805 * 7 6 4 11 11 C 1.53049 * 109.38147 * 305.58760 * 10 7 6 12 12 C 1.53030 * 109.53761 * 61.23944 * 11 10 7 13 13 C 1.46929 * 120.62816 * 154.83657 * 6 4 2 14 14 H 1.09003 * 109.58686 * 246.29402 * 13 6 4 15 15 C 1.52999 * 109.58511 * 6.57855 * 13 6 4 16 16 N 1.46898 * 109.46990 * 239.99954 * 2 1 3 17 17 C 1.46842 * 110.99922 * 49.27203 * 16 2 1 18 18 C 1.53038 * 109.51650 * 185.84590 * 17 16 2 19 19 C 1.53122 * 109.27605 * 300.80506 * 18 17 16 20 20 C 1.50703 * 109.57367 * 177.60032 * 19 18 17 21 21 H 1.08001 * 120.00064 * 240.29831 * 20 19 18 22 22 C 1.37883 * 120.00118 * 60.29327 * 20 19 18 23 23 N 1.31513 * 119.99531 * 0.02562 * 22 20 19 24 24 Si 1.86791 * 119.99863 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47169 * 90.00668 * 24 22 20 26 26 H 1.48502 * 109.47167 * 209.99984 * 24 22 20 27 27 H 1.48496 * 109.47851 * 330.00137 * 24 22 20 28 28 C 1.53117 * 109.15456 * 57.66937 * 19 18 17 29 29 C 1.46851 * 111.00236 * 173.48173 * 16 2 1 30 30 H 1.08994 * 109.47169 * 171.99201 * 1 2 3 31 31 H 1.09000 * 109.46699 * 291.99145 * 1 2 3 32 32 H 1.08993 * 109.46951 * 51.98885 * 1 2 3 33 33 H 1.08999 * 109.47182 * 76.51215 * 9 7 6 34 34 H 1.08998 * 109.47181 * 196.51726 * 9 7 6 35 35 H 1.09005 * 109.46899 * 316.51435 * 9 7 6 36 36 H 1.08997 * 109.56580 * 185.55324 * 10 7 6 37 37 H 1.09002 * 109.38894 * 65.50903 * 10 7 6 38 38 H 1.09005 * 109.45687 * 301.21917 * 11 10 7 39 39 H 1.09000 * 109.45615 * 181.26082 * 11 10 7 40 40 H 1.09007 * 109.49770 * 178.68228 * 12 11 10 41 41 H 1.09007 * 109.50020 * 58.58907 * 12 11 10 42 42 H 1.09005 * 109.47308 * 64.77921 * 15 13 6 43 43 H 1.09001 * 109.46714 * 184.77010 * 15 13 6 44 44 H 1.08995 * 109.47750 * 304.77427 * 15 13 6 45 45 H 1.09003 * 109.46430 * 305.85558 * 17 16 2 46 46 H 1.08996 * 109.46719 * 65.83475 * 17 16 2 47 47 H 1.09000 * 109.50237 * 60.75364 * 18 17 16 48 48 H 1.08996 * 109.50618 * 180.87607 * 18 17 16 49 49 H 1.08995 * 109.53338 * 297.76107 * 19 18 17 50 50 H 0.97007 * 119.99243 * 179.97438 * 23 22 20 51 51 H 1.08997 * 109.50423 * 182.39945 * 28 19 18 52 52 H 1.09003 * 109.53553 * 62.30178 * 28 19 18 53 53 H 1.09001 * 109.45871 * 294.18090 * 29 16 2 54 54 H 1.09003 * 109.45859 * 54.15274 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 2.7986 -1.6442 1.1212 6 7 1.6301 -0.3081 2.4523 7 6 1.1915 1.0758 2.6780 8 1 0.1298 1.0871 2.9241 9 6 1.4370 1.9041 1.4152 10 6 1.9886 1.6674 3.8390 11 6 1.8549 0.7578 5.0626 12 6 2.4253 -0.6245 4.7374 13 6 1.6278 -1.2436 3.5852 14 1 0.6021 -1.4273 3.9053 15 6 2.2773 -2.5628 3.1624 16 7 2.0196 -0.6925 -1.1994 17 6 1.3517 -0.1899 -2.4067 18 6 1.7770 -1.0296 -3.6134 19 6 3.2973 -0.9463 -3.7766 20 6 3.7300 -1.8179 -4.9273 21 1 4.4150 -2.6355 -4.7577 22 6 3.2513 -1.5717 -6.1968 23 7 2.4175 -0.5760 -6.4033 24 14 3.7883 -2.6517 -7.6231 25 1 2.8496 -3.7943 -7.7597 26 1 3.7837 -1.8549 -8.8763 27 1 5.1583 -3.1644 -7.3676 28 6 3.9681 -1.4299 -2.4880 29 6 3.4793 -0.5788 -1.3138 30 1 -0.3633 -1.0176 -0.1432 31 1 -0.3633 0.3848 0.9529 32 1 -0.3633 0.6328 -0.8096 33 1 0.6721 1.6721 0.6741 34 1 1.3937 2.9648 1.6623 35 1 2.4202 1.6653 1.0096 36 1 1.6035 2.6585 4.0787 37 1 3.0384 1.7437 3.5555 38 1 0.8027 0.6625 5.3309 39 1 2.4049 1.1902 5.8984 40 1 2.3511 -1.2647 5.6166 41 1 3.4709 -0.5271 4.4451 42 1 3.3281 -2.3920 2.9286 43 1 2.1988 -3.2836 3.9763 44 1 1.7677 -2.9528 2.2813 45 1 0.2713 -0.2584 -2.2793 46 1 1.6327 0.8503 -2.5710 47 1 1.4841 -2.0676 -3.4558 48 1 1.2933 -0.6467 -4.5119 49 1 3.5867 0.0860 -3.9727 50 1 2.0810 -0.4025 -7.2965 51 1 5.0497 -1.3329 -2.5822 52 1 3.7103 -2.4744 -2.3126 53 1 3.7502 0.4633 -1.4830 54 1 3.9441 -0.9300 -0.3925 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541951196.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:10 Heat of formation + Delta-G solvation = 1.375412 kcal Electronic energy + Delta-G solvation = -30166.231227 eV Core-core repulsion = 26525.155376 eV Total energy + Delta-G solvation = -3641.075851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.23801 -39.78519 -38.29183 -36.87844 -35.07284 -33.81505 -33.36872 -31.49155 -30.93652 -29.84507 -27.48389 -27.26866 -25.98198 -24.21203 -23.60782 -22.57082 -22.49969 -21.50326 -20.40227 -19.95168 -18.46080 -17.60031 -17.16285 -16.81825 -16.65835 -16.39760 -15.70980 -15.52516 -15.29016 -14.98054 -14.87071 -14.72399 -14.38263 -14.28712 -14.18686 -13.97057 -13.75783 -13.42940 -13.31047 -13.17272 -12.88623 -12.82617 -12.73028 -12.59393 -12.55330 -12.27142 -12.19829 -12.10300 -11.93179 -11.87754 -11.72534 -11.62635 -11.45795 -11.42590 -11.16238 -10.88240 -10.64354 -10.37349 -10.03165 -9.38868 -8.90620 -8.08035 -6.20840 1.39739 1.40440 1.50901 1.62402 1.98614 2.43598 3.05441 3.18164 3.53070 3.78612 3.86903 3.92083 3.99325 4.08854 4.17108 4.22301 4.28141 4.30072 4.31263 4.42620 4.47307 4.57247 4.58656 4.65327 4.70407 4.73665 4.77181 4.82789 4.86376 4.89138 4.91924 4.95873 5.02121 5.08757 5.13131 5.13586 5.16840 5.21823 5.23455 5.25921 5.30432 5.35141 5.39486 5.52648 5.55709 5.62708 5.83275 6.00474 6.03678 6.27403 6.34572 6.42246 6.59633 6.88631 7.33258 7.45913 8.96513 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.027232 B = 0.003064 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.939514 B = 9134.828265 C = 9603.442131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.013 3.987 3 H 0.123 0.877 4 C 0.526 3.474 5 O -0.545 6.545 6 N -0.620 5.620 7 C 0.142 3.858 8 H 0.099 0.901 9 C -0.201 4.201 10 C -0.128 4.128 11 C -0.115 4.115 12 C -0.127 4.127 13 C 0.145 3.855 14 H 0.089 0.911 15 C -0.135 4.135 16 N -0.533 5.533 17 C 0.070 3.930 18 C -0.094 4.094 19 C 0.048 3.952 20 C -0.536 4.536 21 H 0.044 0.956 22 C 0.015 3.985 23 N -0.914 5.914 24 Si 0.953 3.047 25 H -0.276 1.276 26 H -0.279 1.279 27 H -0.273 1.273 28 C -0.095 4.095 29 C 0.071 3.929 30 H 0.051 0.949 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.051 0.949 36 H 0.099 0.901 37 H 0.049 0.951 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.046 0.954 42 H 0.047 0.953 43 H 0.065 0.935 44 H 0.037 0.963 45 H 0.085 0.915 46 H 0.022 0.978 47 H 0.023 0.977 48 H 0.067 0.933 49 H -0.008 1.008 50 H 0.261 0.739 51 H 0.044 0.956 52 H 0.038 0.962 53 H 0.017 0.983 54 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.518 7.984 25.503 27.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.097 4.097 3 H 0.140 0.860 4 C 0.315 3.685 5 O -0.422 6.422 6 N -0.356 5.356 7 C 0.040 3.960 8 H 0.116 0.884 9 C -0.257 4.257 10 C -0.166 4.166 11 C -0.153 4.153 12 C -0.165 4.165 13 C 0.043 3.957 14 H 0.106 0.894 15 C -0.193 4.193 16 N -0.259 5.259 17 C -0.057 4.057 18 C -0.132 4.132 19 C 0.029 3.971 20 C -0.574 4.574 21 H 0.062 0.938 22 C -0.184 4.184 23 N -0.554 5.554 24 Si 0.778 3.222 25 H -0.202 1.202 26 H -0.204 1.204 27 H -0.197 1.197 28 C -0.133 4.133 29 C -0.057 4.057 30 H 0.070 0.930 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.070 0.930 36 H 0.117 0.883 37 H 0.068 0.932 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.056 0.944 45 H 0.103 0.897 46 H 0.040 0.960 47 H 0.042 0.958 48 H 0.085 0.915 49 H 0.010 0.990 50 H 0.070 0.930 51 H 0.063 0.937 52 H 0.057 0.943 53 H 0.035 0.965 54 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.320 7.072 25.349 27.316 hybrid contribution 0.903 -0.097 -1.435 1.699 sum -6.416 6.975 23.913 25.723 Atomic orbital electron populations 1.21979 0.90959 1.02787 1.04043 1.23515 0.98376 0.99201 0.88587 0.86036 1.20726 0.79466 0.83392 0.84899 1.90669 1.33198 1.31499 1.86827 1.48256 1.67601 1.12147 1.07642 1.21273 0.99713 0.79183 0.95842 0.88367 1.23355 1.02270 1.01970 0.98092 1.21924 1.00081 1.00121 0.94469 1.21515 1.02257 0.93930 0.97564 1.21972 0.98886 0.97980 0.97692 1.21320 0.99970 0.88520 0.85911 0.89352 1.22037 1.01221 0.96195 0.99826 1.61558 1.04994 1.57502 1.01874 1.22128 0.98666 0.95721 0.89226 1.21410 0.98477 0.97202 0.96135 1.18633 0.92872 0.94137 0.91437 1.21559 1.27130 1.14802 0.93946 0.93788 1.25701 0.95137 0.96533 1.01008 1.69998 1.32752 1.30438 1.22168 0.85641 0.78692 0.78914 0.78906 1.20179 1.20432 1.19736 1.21477 0.98187 0.98582 0.95019 1.22020 0.88118 0.96677 0.98848 0.93014 0.88559 0.90240 0.88707 0.88766 0.93040 0.88255 0.93213 0.90193 0.90636 0.89495 0.93548 0.93345 0.91643 0.94396 0.89659 0.96019 0.95845 0.91497 0.98984 0.92963 0.93713 0.94280 0.96499 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 6.56 71.98 0.47 -2.61 16 2 C 0.01 0.37 1.48 44.17 0.07 0.44 16 3 H 0.12 3.06 3.56 -15.83 -0.06 3.00 16 4 C 0.53 15.42 5.70 87.66 0.50 15.92 16 5 O -0.55 -20.61 10.24 -3.03 -0.03 -20.64 16 6 N -0.62 -12.90 2.81 -772.12 -2.17 -15.07 16 7 C 0.14 1.91 2.42 44.83 0.11 2.02 16 8 H 0.10 0.92 7.79 -2.39 -0.02 0.90 16 9 C -0.20 -2.85 6.99 71.98 0.50 -2.35 16 10 C -0.13 -1.40 5.28 30.53 0.16 -1.24 16 11 C -0.12 -1.14 5.89 30.62 0.18 -0.96 16 12 C -0.13 -1.84 5.37 30.67 0.16 -1.67 16 13 C 0.15 2.72 3.49 44.98 0.16 2.88 16 14 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 15 C -0.14 -3.37 7.65 71.98 0.55 -2.82 16 16 N -0.53 -20.22 4.29 -875.52 -3.76 -23.98 16 17 C 0.07 2.76 4.97 86.33 0.43 3.19 16 18 C -0.09 -4.72 5.12 30.65 0.16 -4.56 16 19 C 0.05 2.59 2.16 -11.46 -0.02 2.56 16 20 C -0.54 -31.71 8.56 25.60 0.22 -31.49 16 21 H 0.04 2.61 7.74 -2.91 -0.02 2.59 16 22 C 0.01 0.85 5.31 84.66 0.45 1.30 16 23 N -0.91 -53.94 11.38 21.45 0.24 -53.69 16 24 Si 0.95 45.53 29.54 68.60 2.03 47.56 16 25 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 26 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 27 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 28 C -0.09 -4.57 5.32 30.64 0.16 -4.41 16 29 C 0.07 2.94 5.11 86.32 0.44 3.38 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.10 1.50 5.40 -2.39 -0.01 1.48 16 32 H 0.08 1.60 6.71 -2.39 -0.02 1.58 16 33 H 0.09 1.37 3.63 -2.39 -0.01 1.36 16 34 H 0.09 0.89 8.04 -2.39 -0.02 0.87 16 35 H 0.05 1.01 5.68 -2.38 -0.01 1.00 16 36 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 39 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 42 H 0.05 1.46 6.88 -2.38 -0.02 1.45 16 43 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.04 1.16 6.72 -2.39 -0.02 1.15 16 45 H 0.09 2.92 6.00 -2.39 -0.01 2.91 16 46 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.07 3.68 6.18 -2.39 -0.01 3.67 16 49 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 50 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 51 H 0.04 2.10 8.14 -2.39 -0.02 2.09 16 52 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 53 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 54 H 0.08 3.21 5.68 -2.39 -0.01 3.19 16 Total: -1.00 -71.07 377.42 1.83 -69.24 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.82 Total: 17.00 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: 4.70 Total: -20.43 kcal Atomic # 7 Polarization: -87.05 SS G_CDS: -5.68 Total: -92.73 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.03 Total: -20.64 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -71.07 1.83 -69.24 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541951196.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.617 kcal (2) G-P(sol) polarization free energy of solvation -71.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds