Wall clock time and date at job start Tue Mar 31 2020 15:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47004 * 2 1 4 4 C 1.50700 * 109.47198 * 239.99918 * 2 1 3 5 5 O 1.21283 * 119.99587 * 239.99479 * 4 2 1 6 6 N 1.34774 * 120.00378 * 60.00041 * 4 2 1 7 7 C 1.46495 * 120.00233 * 180.02562 * 6 4 2 8 8 H 1.09007 * 109.47116 * 324.99589 * 7 6 4 9 9 C 1.52999 * 109.47258 * 84.99801 * 7 6 4 10 10 C 1.53000 * 109.47131 * 60.00009 * 9 7 6 11 11 C 1.53001 * 109.46983 * 59.99909 * 10 9 7 12 12 C 1.52999 * 109.47261 * 300.00011 * 11 10 9 13 13 C 1.53000 * 109.47131 * 60.00080 * 12 11 10 14 14 H 1.09001 * 109.47063 * 59.99891 * 13 12 11 15 15 C 1.53001 * 109.47366 * 179.97438 * 13 12 11 16 16 N 1.46901 * 109.47148 * 119.99390 * 2 1 3 17 17 C 1.46842 * 111.00138 * 295.00299 * 16 2 1 18 18 C 1.53041 * 109.52420 * 185.83859 * 17 16 2 19 19 C 1.53121 * 109.27434 * 300.82269 * 18 17 16 20 20 C 1.50699 * 109.52204 * 177.56059 * 19 18 17 21 21 H 1.08011 * 119.99963 * 335.20905 * 20 19 18 22 22 C 1.37881 * 120.00496 * 155.21407 * 20 19 18 23 23 N 1.31520 * 119.99391 * 355.44027 * 22 20 19 24 24 Si 1.86799 * 120.00276 * 175.16860 * 22 20 19 25 25 H 1.48501 * 109.47017 * 59.99695 * 24 22 20 26 26 H 1.48496 * 109.47011 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46859 * 300.00064 * 24 22 20 28 28 C 1.53118 * 109.16424 * 57.65362 * 19 18 17 29 29 C 1.46842 * 110.99585 * 59.21410 * 16 2 1 30 30 H 1.09001 * 109.47264 * 300.00231 * 1 2 3 31 31 H 1.09006 * 109.47198 * 60.00113 * 1 2 3 32 32 H 1.09002 * 109.47004 * 180.02562 * 1 2 3 33 33 H 0.96997 * 119.99724 * 0.02562 * 6 4 2 34 34 H 1.09001 * 109.47236 * 180.02562 * 9 7 6 35 35 H 1.09001 * 109.47054 * 300.00330 * 9 7 6 36 36 H 1.08994 * 109.47396 * 180.02562 * 10 9 7 37 37 H 1.09001 * 109.47063 * 300.00109 * 10 9 7 38 38 H 1.09001 * 109.47058 * 60.00197 * 11 10 9 39 39 H 1.09007 * 109.46810 * 179.97438 * 11 10 9 40 40 H 1.09001 * 109.47054 * 179.97438 * 12 11 10 41 41 H 1.09001 * 109.47236 * 300.00077 * 12 11 10 42 42 H 1.08998 * 109.46982 * 179.97438 * 15 13 12 43 43 H 1.08998 * 109.47169 * 300.00418 * 15 13 12 44 44 H 1.09001 * 109.46871 * 60.00077 * 15 13 12 45 45 H 1.08997 * 109.46312 * 65.82342 * 17 16 2 46 46 H 1.09003 * 109.45597 * 305.84562 * 17 16 2 47 47 H 1.09001 * 109.50549 * 180.88192 * 18 17 16 48 48 H 1.08996 * 109.50135 * 60.75927 * 18 17 16 49 49 H 1.09004 * 109.52351 * 297.68047 * 19 18 17 50 50 H 0.97000 * 119.99979 * 4.91145 * 23 22 20 51 51 H 1.09004 * 109.50037 * 62.28470 * 28 19 18 52 52 H 1.09000 * 109.50158 * 182.40245 * 28 19 18 53 53 H 1.09000 * 109.46524 * 294.17511 * 29 16 2 54 54 H 1.09001 * 109.46897 * 54.14580 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7296 -1.6964 -1.1191 6 7 1.7068 -0.2500 -2.4546 7 6 2.1946 -0.9410 -3.6507 8 1 3.1938 -1.3335 -3.4614 9 6 1.2501 -2.0946 -3.9942 10 6 -0.1523 -1.5436 -4.2599 11 6 -0.1005 -0.5607 -5.4313 12 6 0.8440 0.5929 -5.0877 13 6 2.2464 0.0420 -4.8220 14 1 2.6094 -0.4722 -5.7120 15 6 3.1911 1.1956 -4.4791 16 7 2.0196 -0.6924 1.1995 17 6 1.6487 0.0391 2.4176 18 6 2.2964 -0.6291 3.6326 19 6 1.8222 -2.0822 3.7229 20 6 2.5027 -2.7629 4.8825 21 1 3.4544 -2.3980 5.2400 22 6 1.9106 -3.8515 5.4871 23 7 0.7118 -4.2408 5.1115 24 14 2.8142 -4.7779 6.8341 25 1 3.1037 -3.8551 7.9610 26 1 1.9681 -5.8985 7.3174 27 1 4.0890 -5.3162 6.2951 28 6 2.1776 -2.8087 2.4228 29 6 1.5334 -2.0773 1.2429 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.1494 0.5388 -2.5436 34 1 1.6134 -2.6090 -4.8839 35 1 1.2133 -2.7948 -3.1597 36 1 -0.8253 -2.3655 -4.5042 37 1 -0.5153 -1.0295 -3.3700 38 1 0.2625 -1.0748 -6.3212 39 1 -1.0998 -0.1685 -5.6208 40 1 0.8811 1.2929 -5.9224 41 1 0.4809 1.1070 -4.1978 42 1 4.1900 0.8030 -4.2894 43 1 3.2278 1.8955 -5.3138 44 1 2.8282 1.7100 -3.5893 45 1 0.5648 0.0281 2.5320 46 1 1.9957 1.0696 2.3421 47 1 2.0083 -0.0953 4.5382 48 1 3.3809 -0.6063 3.5254 49 1 0.7424 -2.1045 3.8703 50 1 0.2738 -3.8077 4.3622 51 1 3.2603 -2.8201 2.2967 52 1 1.8047 -3.8321 2.4641 53 1 0.4500 -2.0783 1.3628 54 1 1.7964 -2.5839 0.3143 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541951337.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:35 Heat of formation + Delta-G solvation = -82.880577 kcal Electronic energy + Delta-G solvation = -29401.263798 eV Core-core repulsion = 25756.534333 eV Total energy + Delta-G solvation = -3644.729465 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.71309 -40.24695 -38.79832 -36.30056 -34.80871 -33.80601 -33.41652 -31.64330 -31.27333 -30.07844 -27.25105 -27.13907 -25.52524 -24.07336 -23.74557 -23.11823 -22.35824 -21.43278 -20.33916 -20.01040 -18.84346 -18.09060 -17.35056 -16.46192 -16.31627 -16.02879 -15.73307 -15.64160 -15.59694 -15.44076 -15.23896 -15.00759 -14.65957 -14.32028 -14.13105 -13.99849 -13.70555 -13.48838 -13.36216 -13.17029 -12.95648 -12.87131 -12.80755 -12.65737 -12.59333 -12.52361 -12.41238 -12.16492 -11.96320 -11.83966 -11.81627 -11.45624 -11.40385 -11.24384 -11.04712 -10.92552 -10.68425 -10.42169 -10.26096 -9.95017 -9.19785 -8.59270 -6.29044 1.50367 1.59212 1.67927 1.78023 2.11126 2.57095 2.98218 3.20664 3.62807 3.77405 3.80817 3.83879 3.95879 4.02663 4.16785 4.18461 4.19255 4.22357 4.30676 4.42432 4.47835 4.52190 4.54340 4.57361 4.62770 4.67466 4.70575 4.76244 4.77841 4.79606 4.85228 4.96688 4.99186 5.00826 5.05929 5.12994 5.14287 5.17325 5.17489 5.28565 5.29650 5.32252 5.38816 5.43600 5.51723 5.56663 5.65011 5.71334 6.07723 6.15590 6.18267 6.26284 6.63743 6.68453 7.35510 7.50529 8.79114 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.024573 B = 0.002757 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.172327 B =10153.205099 C =10405.371201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.062 3.938 3 H 0.134 0.866 4 C 0.518 3.482 5 O -0.565 6.565 6 N -0.703 5.703 7 C 0.152 3.848 8 H 0.059 0.941 9 C -0.130 4.130 10 C -0.115 4.115 11 C -0.115 4.115 12 C -0.112 4.112 13 C -0.090 4.090 14 H 0.090 0.910 15 C -0.146 4.146 16 N -0.525 5.525 17 C 0.066 3.934 18 C -0.094 4.094 19 C 0.027 3.973 20 C -0.604 4.604 21 H 0.041 0.959 22 C -0.034 4.034 23 N -0.940 5.940 24 Si 1.111 2.889 25 H -0.268 1.268 26 H -0.284 1.284 27 H -0.276 1.276 28 C -0.089 4.089 29 C 0.066 3.934 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.041 0.959 33 H 0.410 0.590 34 H 0.078 0.922 35 H 0.033 0.967 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.043 0.957 43 H 0.072 0.928 44 H 0.056 0.944 45 H 0.033 0.967 46 H 0.098 0.902 47 H 0.055 0.945 48 H 0.046 0.954 49 H -0.001 1.001 50 H 0.256 0.744 51 H 0.035 0.965 52 H 0.018 0.982 53 H 0.017 0.983 54 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.496 15.620 -24.926 29.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.049 4.049 3 H 0.151 0.849 4 C 0.304 3.696 5 O -0.443 6.443 6 N -0.358 5.358 7 C 0.047 3.953 8 H 0.077 0.923 9 C -0.168 4.168 10 C -0.153 4.153 11 C -0.153 4.153 12 C -0.149 4.149 13 C -0.108 4.108 14 H 0.108 0.892 15 C -0.204 4.204 16 N -0.249 5.249 17 C -0.062 4.062 18 C -0.132 4.132 19 C 0.008 3.992 20 C -0.642 4.642 21 H 0.059 0.941 22 C -0.231 4.231 23 N -0.578 5.578 24 Si 0.933 3.067 25 H -0.193 1.193 26 H -0.209 1.209 27 H -0.201 1.201 28 C -0.127 4.127 29 C -0.062 4.062 30 H 0.093 0.907 31 H 0.115 0.885 32 H 0.061 0.939 33 H 0.249 0.751 34 H 0.096 0.904 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.062 0.938 43 H 0.091 0.909 44 H 0.075 0.925 45 H 0.051 0.949 46 H 0.116 0.884 47 H 0.074 0.926 48 H 0.065 0.935 49 H 0.018 0.982 50 H 0.066 0.934 51 H 0.053 0.947 52 H 0.037 0.963 53 H 0.035 0.965 54 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.629 13.687 -23.792 27.496 hybrid contribution -0.866 0.808 -0.699 1.375 sum -2.495 14.495 -24.491 28.568 Atomic orbital electron populations 1.22365 0.94051 1.02390 1.04692 1.21802 0.95199 0.99532 0.88413 0.84883 1.20741 0.79396 0.84068 0.85377 1.90663 1.38989 1.27804 1.86801 1.45900 1.53520 1.32118 1.04233 1.20930 0.96874 0.92798 0.84665 0.92270 1.21881 0.96706 0.97322 1.00915 1.21474 0.95466 0.99215 0.99155 1.21529 1.00129 0.96112 0.97505 1.21605 0.93162 0.97764 1.02382 1.21373 0.97034 0.95811 0.96630 0.89185 1.21816 0.98476 0.97898 1.02185 1.61788 1.59859 1.01650 1.01610 1.22137 0.97619 0.97714 0.88699 1.21457 0.99536 0.95925 0.96262 1.18873 0.94530 0.93246 0.92581 1.22372 1.07806 1.16120 1.17916 0.94061 1.27234 0.95925 0.96756 1.03228 1.70915 1.13935 1.44800 1.28124 0.83014 0.74493 0.75511 0.73651 1.19322 1.20913 1.20126 1.21484 0.98632 0.97039 0.95574 1.22127 0.95188 0.89666 0.99231 0.90743 0.88457 0.93944 0.75125 0.90353 0.94830 0.92326 0.92379 0.91499 0.90914 0.89967 0.91513 0.93825 0.90940 0.92454 0.94888 0.88412 0.92609 0.93528 0.98245 0.93393 0.94651 0.96287 0.96540 0.90317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.67 8.40 71.98 0.60 -3.07 16 2 C 0.06 1.57 2.77 44.17 0.12 1.69 16 3 H 0.13 2.54 8.08 -2.39 -0.02 2.52 16 4 C 0.52 14.17 6.80 87.66 0.60 14.76 16 5 O -0.56 -21.57 13.57 -3.04 -0.04 -21.61 16 6 N -0.70 -12.74 3.43 -442.54 -1.52 -14.26 16 7 C 0.15 2.74 2.23 44.99 0.10 2.85 16 8 H 0.06 1.43 7.58 -2.38 -0.02 1.42 16 9 C -0.13 -2.44 5.60 30.59 0.17 -2.26 16 10 C -0.12 -1.66 5.77 30.59 0.18 -1.49 16 11 C -0.12 -1.08 5.92 30.59 0.18 -0.90 16 12 C -0.11 -0.88 5.03 30.59 0.15 -0.72 16 13 C -0.09 -0.99 2.51 -10.79 -0.03 -1.02 16 14 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 15 C -0.15 -1.60 9.04 71.98 0.65 -0.95 16 16 N -0.52 -18.61 4.43 -875.53 -3.88 -22.50 16 17 C 0.07 2.23 5.02 86.33 0.43 2.67 16 18 C -0.09 -4.10 5.36 30.65 0.16 -3.93 16 19 C 0.03 1.41 1.89 -11.46 -0.02 1.39 16 20 C -0.60 -35.88 8.32 25.60 0.21 -35.67 16 21 H 0.04 2.44 7.81 -2.90 -0.02 2.42 16 22 C -0.03 -2.05 5.46 84.65 0.46 -1.58 16 23 N -0.94 -59.93 13.63 21.45 0.29 -59.64 16 24 Si 1.11 52.87 29.91 68.60 2.05 54.92 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 26 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 27 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 28 C -0.09 -4.58 5.36 30.65 0.16 -4.41 16 29 C 0.07 2.78 4.48 86.33 0.39 3.17 16 30 H 0.07 1.53 6.65 -2.39 -0.02 1.52 16 31 H 0.10 1.27 7.57 -2.38 -0.02 1.25 16 32 H 0.04 1.10 6.52 -2.39 -0.02 1.09 16 33 H 0.41 4.86 6.07 -92.71 -0.56 4.30 16 34 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.06 0.88 7.60 -2.39 -0.02 0.86 16 38 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 40 H 0.08 0.45 8.14 -2.39 -0.02 0.44 16 41 H 0.07 0.45 6.51 -2.39 -0.02 0.44 16 42 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.07 0.57 8.14 -2.39 -0.02 0.56 16 44 H 0.06 0.62 7.45 -2.39 -0.02 0.60 16 45 H 0.03 1.10 6.73 -2.39 -0.02 1.09 16 46 H 0.10 2.63 8.08 -2.39 -0.02 2.61 16 47 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 48 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 49 H 0.00 -0.04 6.68 -2.38 -0.02 -0.05 16 50 H 0.26 16.52 6.66 -92.71 -0.62 15.90 16 51 H 0.03 1.90 8.14 -2.39 -0.02 1.88 16 52 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 53 H 0.02 0.70 6.62 -2.39 -0.02 0.68 16 54 H 0.08 3.50 5.32 -2.39 -0.01 3.49 16 Total: -1.00 -75.91 394.00 1.88 -74.03 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 0.45 Total: 18.54 kcal Atomic # 6 Polarization: -34.02 SS G_CDS: 4.53 Total: -29.49 kcal Atomic # 7 Polarization: -91.28 SS G_CDS: -5.11 Total: -96.39 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.04 Total: -21.61 kcal Atomic # 14 Polarization: 52.87 SS G_CDS: 2.05 Total: 54.92 kcal Total: -75.91 1.88 -74.03 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541951337.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.852 kcal (2) G-P(sol) polarization free energy of solvation -75.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds