Wall clock time and date at job start Tue Mar 31 2020 15:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 O 1.21277 * 120.00304 * 240.00314 * 4 2 1 6 6 N 1.34778 * 119.99637 * 59.99942 * 4 2 1 7 7 C 1.46505 * 119.99943 * 180.02562 * 6 4 2 8 8 H 1.09000 * 109.47005 * 34.99550 * 7 6 4 9 9 C 1.52999 * 109.47224 * 275.00355 * 7 6 4 10 10 C 1.52997 * 109.47249 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47263 * 59.99835 * 10 9 7 12 12 C 1.53005 * 109.47050 * 299.99937 * 11 10 9 13 13 C 1.52998 * 109.47270 * 155.00201 * 7 6 4 14 14 H 1.08997 * 109.47149 * 59.99634 * 13 7 6 15 15 C 1.53003 * 109.46684 * 299.99953 * 13 7 6 16 16 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 17 17 C 1.46847 * 110.99731 * 59.21266 * 16 2 1 18 18 C 1.53039 * 109.52635 * 174.15657 * 17 16 2 19 19 C 1.53121 * 109.27321 * 59.17782 * 18 17 16 20 20 C 1.50702 * 109.52199 * 182.44123 * 19 18 17 21 21 H 1.07995 * 119.99862 * 119.68819 * 20 19 18 22 22 C 1.37882 * 120.00035 * 299.68374 * 20 19 18 23 23 N 1.31511 * 119.99744 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00106 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46770 * 60.00199 * 24 22 20 26 26 H 1.48501 * 109.47125 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47368 * 300.00357 * 24 22 20 28 28 C 1.53113 * 109.16518 * 302.34684 * 19 18 17 29 29 C 1.46846 * 111.00430 * 295.00127 * 16 2 1 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 0.97000 * 120.00446 * 0.02562 * 6 4 2 34 34 H 1.09006 * 109.46801 * 300.00141 * 9 7 6 35 35 H 1.08996 * 109.47469 * 59.99449 * 9 7 6 36 36 H 1.08997 * 109.47316 * 299.99597 * 10 9 7 37 37 H 1.08998 * 109.47134 * 179.97438 * 10 9 7 38 38 H 1.08996 * 109.47394 * 180.02562 * 11 10 9 39 39 H 1.08997 * 109.47149 * 59.99660 * 11 10 9 40 40 H 1.09000 * 109.46757 * 300.00364 * 12 11 10 41 41 H 1.08996 * 109.47059 * 179.97438 * 12 11 10 42 42 H 1.09004 * 109.47207 * 60.00192 * 15 13 7 43 43 H 1.09005 * 109.46612 * 179.97438 * 15 13 7 44 44 H 1.08997 * 109.47068 * 299.99731 * 15 13 7 45 45 H 1.08999 * 109.46258 * 294.17720 * 17 16 2 46 46 H 1.09003 * 109.46366 * 54.14195 * 17 16 2 47 47 H 1.08999 * 109.50438 * 299.24454 * 18 17 16 48 48 H 1.08999 * 109.53647 * 179.13586 * 18 17 16 49 49 H 1.09002 * 109.57374 * 62.28238 * 19 18 17 50 50 H 0.97003 * 119.99683 * 179.97438 * 23 22 20 51 51 H 1.09005 * 109.50542 * 297.71805 * 28 19 18 52 52 H 1.09001 * 109.53763 * 177.61234 * 28 19 18 53 53 H 1.08998 * 109.46258 * 305.85455 * 29 16 2 54 54 H 1.08999 * 109.45687 * 65.81880 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 2.1947 -0.9409 -3.6507 8 1 2.2311 -2.0137 -3.4612 9 6 3.5975 -0.4361 -3.9947 10 6 4.1068 -1.1572 -5.2443 11 6 3.1626 -0.8772 -6.4152 12 6 1.7598 -1.3821 -6.0712 13 6 1.2507 -0.6615 -4.8218 14 1 1.2143 0.4113 -5.0113 15 6 -0.1521 -1.1664 -4.4777 16 7 2.0196 -0.6924 1.1995 17 6 1.5334 -2.0774 1.2430 18 6 2.1777 -2.8089 2.4228 19 6 1.8222 -2.0823 3.7229 20 6 2.5028 -2.7631 4.8825 21 1 3.2037 -2.2150 5.4945 22 6 2.2305 -4.0855 5.1620 23 7 1.3772 -4.7529 4.4163 24 14 3.0746 -4.9295 6.5988 25 1 2.7358 -4.2194 7.8583 26 1 2.6142 -6.3387 6.6851 27 1 4.5453 -4.9013 6.3949 28 6 2.2964 -0.6293 3.6326 29 6 1.6488 0.0390 2.4177 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.1494 0.5389 -2.5436 34 1 3.5612 0.6368 -4.1842 35 1 4.2700 -0.6351 -3.1604 36 1 4.1430 -2.2300 -5.0553 37 1 5.1059 -0.7972 -5.4897 38 1 3.5251 -1.3913 -7.3053 39 1 3.1263 0.1956 -6.6042 40 1 1.7961 -2.4550 -5.8821 41 1 1.0870 -1.1822 -6.9051 42 1 -0.5151 -0.6523 -3.5877 43 1 -0.8248 -0.9669 -5.3119 44 1 -0.1157 -2.2391 -4.2883 45 1 0.4501 -2.0783 1.3628 46 1 1.7964 -2.5839 0.3143 47 1 3.2603 -2.8203 2.2966 48 1 1.8052 -3.8324 2.4643 49 1 0.7424 -2.1046 3.8702 50 1 1.1859 -5.6834 4.6127 51 1 3.3810 -0.6064 3.5254 52 1 2.0088 -0.0950 4.5381 53 1 1.9956 1.0696 2.3422 54 1 0.5649 0.0281 2.5319 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541951338.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:39 Heat of formation + Delta-G solvation = -80.731966 kcal Electronic energy + Delta-G solvation = -29074.424839 eV Core-core repulsion = 25429.788545 eV Total energy + Delta-G solvation = -3644.636294 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.54072 -40.05119 -38.75885 -36.05790 -35.23767 -33.78938 -33.37576 -31.45101 -31.16396 -29.90469 -27.47462 -27.20227 -25.57520 -23.84867 -23.74316 -22.71943 -22.11909 -21.35290 -20.58801 -19.99149 -18.43776 -17.86879 -17.58267 -16.72987 -16.36221 -16.13343 -15.62395 -15.47263 -15.35085 -15.25916 -14.93211 -14.85903 -14.69965 -14.33587 -14.22009 -13.94127 -13.67570 -13.40330 -13.33681 -13.07396 -12.95432 -12.85233 -12.80352 -12.67471 -12.51770 -12.42179 -12.32797 -12.12921 -11.96415 -11.80602 -11.68100 -11.45520 -11.37422 -11.33233 -11.13748 -10.84691 -10.78858 -10.43132 -10.27142 -9.89703 -9.08114 -8.07514 -6.21171 1.38972 1.41844 1.48927 1.72152 2.13284 2.43299 3.09713 3.19060 3.62990 3.76658 3.81929 3.97537 4.05201 4.12064 4.17833 4.25189 4.30774 4.34531 4.44929 4.47105 4.49743 4.55556 4.57344 4.60622 4.67698 4.72087 4.79065 4.85198 4.90389 4.94031 5.01023 5.02757 5.08180 5.10858 5.16039 5.18412 5.23635 5.25317 5.27913 5.29459 5.34912 5.37840 5.42078 5.53234 5.59489 5.62402 5.68531 5.99639 6.02368 6.25228 6.34555 6.41378 6.69164 6.90916 7.40261 7.46128 8.96914 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.020749 B = 0.002723 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.165236 B =10280.616512 C =10691.102169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.062 3.938 3 H 0.133 0.867 4 C 0.517 3.483 5 O -0.565 6.565 6 N -0.710 5.710 7 C 0.152 3.848 8 H 0.051 0.949 9 C -0.124 4.124 10 C -0.118 4.118 11 C -0.115 4.115 12 C -0.112 4.112 13 C -0.087 4.087 14 H 0.096 0.904 15 C -0.148 4.148 16 N -0.529 5.529 17 C 0.068 3.932 18 C -0.090 4.090 19 C 0.046 3.954 20 C -0.534 4.534 21 H 0.051 0.949 22 C 0.009 3.991 23 N -0.919 5.919 24 Si 0.955 3.045 25 H -0.267 1.267 26 H -0.284 1.284 27 H -0.274 1.274 28 C -0.101 4.101 29 C 0.067 3.933 30 H 0.040 0.960 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.414 0.586 34 H 0.080 0.920 35 H 0.035 0.965 36 H 0.047 0.953 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.051 0.949 41 H 0.084 0.916 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.036 0.964 45 H 0.015 0.985 46 H 0.071 0.929 47 H 0.016 0.984 48 H 0.054 0.946 49 H -0.009 1.009 50 H 0.259 0.741 51 H 0.045 0.955 52 H 0.060 0.940 53 H 0.096 0.904 54 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.262 15.174 -23.942 28.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.049 4.049 3 H 0.151 0.849 4 C 0.303 3.697 5 O -0.443 6.443 6 N -0.363 5.363 7 C 0.047 3.953 8 H 0.069 0.931 9 C -0.163 4.163 10 C -0.156 4.156 11 C -0.152 4.152 12 C -0.150 4.150 13 C -0.106 4.106 14 H 0.114 0.886 15 C -0.205 4.205 16 N -0.253 5.253 17 C -0.060 4.060 18 C -0.128 4.128 19 C 0.028 3.972 20 C -0.572 4.572 21 H 0.070 0.930 22 C -0.190 4.190 23 N -0.559 5.559 24 Si 0.780 3.220 25 H -0.192 1.192 26 H -0.209 1.209 27 H -0.200 1.200 28 C -0.139 4.139 29 C -0.060 4.060 30 H 0.059 0.941 31 H 0.117 0.883 32 H 0.093 0.907 33 H 0.251 0.749 34 H 0.099 0.901 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.103 0.897 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.056 0.944 45 H 0.033 0.967 46 H 0.089 0.911 47 H 0.035 0.965 48 H 0.072 0.928 49 H 0.009 0.991 50 H 0.068 0.932 51 H 0.064 0.936 52 H 0.078 0.922 53 H 0.114 0.886 54 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.336 14.277 -23.890 27.929 hybrid contribution -0.506 -0.965 1.223 1.637 sum -2.842 13.312 -22.667 26.441 Atomic orbital electron populations 1.22361 0.93969 1.02344 1.04744 1.21802 0.95281 0.99423 0.88430 0.84917 1.20825 0.79405 0.83996 0.85439 1.90673 1.38900 1.27885 1.86802 1.45888 1.53685 1.32388 1.04317 1.20978 0.93824 0.96162 0.84330 0.93091 1.21860 0.95678 1.01169 0.97603 1.21501 0.99645 0.99781 0.94666 1.21542 0.94303 1.02131 0.97269 1.21574 0.96961 0.99511 0.96929 1.21346 0.93929 1.01995 0.93312 0.88554 1.21841 0.96024 1.00494 1.02156 1.61830 1.59965 1.01896 1.01623 1.22123 0.95135 0.89277 0.99450 1.21350 0.97133 0.99890 0.94443 1.18648 0.93935 0.91950 0.92711 1.21591 1.25267 0.96705 1.13664 0.93024 1.25798 0.95844 0.98226 0.99092 1.70034 1.35721 1.09960 1.40157 0.85670 0.78868 0.77425 0.80041 1.19232 1.20934 1.19975 1.21548 0.99523 0.96406 0.96377 1.22111 0.97669 0.97511 0.88753 0.94065 0.88348 0.90654 0.74901 0.90143 0.94603 0.93420 0.91176 0.91045 0.90560 0.93022 0.89732 0.92307 0.90843 0.94430 0.96735 0.91089 0.96491 0.92799 0.99095 0.93192 0.93645 0.92183 0.88615 0.94788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.76 8.40 71.98 0.60 -3.15 16 2 C 0.06 1.64 2.77 44.17 0.12 1.76 16 3 H 0.13 2.64 8.08 -2.39 -0.02 2.62 16 4 C 0.52 14.93 6.80 87.66 0.60 15.52 16 5 O -0.56 -22.80 13.57 -3.02 -0.04 -22.85 16 6 N -0.71 -13.60 4.28 -442.53 -1.89 -15.49 16 7 C 0.15 2.95 1.90 44.99 0.09 3.03 16 8 H 0.05 1.39 7.58 -2.39 -0.02 1.37 16 9 C -0.12 -2.36 5.49 30.59 0.17 -2.19 16 10 C -0.12 -1.89 5.92 30.59 0.18 -1.70 16 11 C -0.12 -1.28 5.92 30.60 0.18 -1.09 16 12 C -0.11 -1.29 5.20 30.58 0.16 -1.13 16 13 C -0.09 -1.07 2.29 -10.81 -0.02 -1.10 16 14 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 15 C -0.15 -1.92 9.04 71.98 0.65 -1.27 16 16 N -0.53 -19.51 4.43 -875.51 -3.88 -23.39 16 17 C 0.07 3.02 4.48 86.33 0.39 3.41 16 18 C -0.09 -4.85 5.12 30.65 0.16 -4.69 16 19 C 0.05 2.48 2.16 -11.46 -0.02 2.46 16 20 C -0.53 -31.39 8.56 25.60 0.22 -31.17 16 21 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 22 C 0.01 0.50 5.31 84.66 0.45 0.95 16 23 N -0.92 -56.38 11.37 21.45 0.24 -56.13 16 24 Si 0.95 46.05 29.54 68.60 2.03 48.08 16 25 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 26 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 27 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 28 C -0.10 -4.38 5.32 30.64 0.16 -4.21 16 29 C 0.07 2.30 5.03 86.33 0.43 2.73 16 30 H 0.04 1.11 6.52 -2.39 -0.02 1.09 16 31 H 0.10 1.30 7.56 -2.39 -0.02 1.28 16 32 H 0.07 1.57 6.65 -2.38 -0.02 1.56 16 33 H 0.41 4.83 7.81 -92.71 -0.72 4.10 16 34 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.06 0.74 7.45 -2.38 -0.02 0.72 16 43 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 44 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.01 0.65 6.62 -2.39 -0.02 0.63 16 46 H 0.07 3.36 5.32 -2.39 -0.01 3.34 16 47 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.05 3.26 6.17 -2.39 -0.01 3.24 16 49 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 50 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 51 H 0.04 2.05 8.14 -2.38 -0.02 2.03 16 52 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 53 H 0.10 2.60 8.08 -2.39 -0.02 2.58 16 54 H 0.03 1.14 6.73 -2.39 -0.02 1.12 16 Total: -1.00 -74.69 396.97 1.09 -73.60 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.13 Total: 18.03 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: 4.51 Total: -21.85 kcal Atomic # 7 Polarization: -89.49 SS G_CDS: -5.53 Total: -95.02 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.04 Total: -22.85 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -74.69 1.09 -73.60 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541951338.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.129 kcal (2) G-P(sol) polarization free energy of solvation -74.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds