Wall clock time and date at job start Tue Mar 31 2020 15:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46633 * 2 1 4 4 C 1.50695 * 109.47547 * 120.00116 * 2 1 3 5 5 O 1.21282 * 120.00092 * 105.26919 * 4 2 1 6 6 N 1.34778 * 119.99749 * 285.27393 * 4 2 1 7 7 C 1.46505 * 119.99630 * 179.97438 * 6 4 2 8 8 H 1.08998 * 109.47437 * 325.00079 * 7 6 4 9 9 C 1.53004 * 109.47191 * 85.00035 * 7 6 4 10 10 C 1.53006 * 109.47032 * 59.99601 * 9 7 6 11 11 C 1.53003 * 109.46712 * 60.00165 * 10 9 7 12 12 C 1.52994 * 109.47214 * 299.99775 * 11 10 9 13 13 C 1.52996 * 109.47159 * 60.00488 * 12 11 10 14 14 H 1.08990 * 109.47376 * 59.99809 * 13 12 11 15 15 C 1.53004 * 109.47093 * 180.02562 * 13 12 11 16 16 N 1.46899 * 109.47153 * 240.00329 * 2 1 3 17 17 C 1.46850 * 111.00239 * 76.44065 * 16 2 1 18 18 C 1.53034 * 109.52661 * 174.15955 * 17 16 2 19 19 C 1.53116 * 109.27501 * 59.17759 * 18 17 16 20 20 C 1.50705 * 109.52086 * 182.43915 * 19 18 17 21 21 H 1.08007 * 119.99467 * 119.68367 * 20 19 18 22 22 C 1.37876 * 120.00237 * 299.68480 * 20 19 18 23 23 N 1.31511 * 120.00063 * 179.97438 * 22 20 19 24 24 Si 1.86790 * 119.99803 * 359.97438 * 22 20 19 25 25 H 1.48495 * 109.47521 * 89.99928 * 24 22 20 26 26 H 1.48506 * 109.47030 * 209.99901 * 24 22 20 27 27 H 1.48499 * 109.47379 * 329.99577 * 24 22 20 28 28 C 1.53117 * 109.16296 * 302.34666 * 19 18 17 29 29 C 1.46842 * 111.00121 * 312.22954 * 16 2 1 30 30 H 1.08998 * 109.47111 * 299.99402 * 1 2 3 31 31 H 1.08999 * 109.46990 * 59.99971 * 1 2 3 32 32 H 1.09002 * 109.46602 * 179.97438 * 1 2 3 33 33 H 0.97001 * 120.00335 * 359.97438 * 6 4 2 34 34 H 1.08999 * 109.46743 * 300.00308 * 9 7 6 35 35 H 1.08990 * 109.47174 * 179.97438 * 9 7 6 36 36 H 1.08994 * 109.46892 * 180.02562 * 10 9 7 37 37 H 1.09003 * 109.47099 * 300.00352 * 10 9 7 38 38 H 1.08995 * 109.46895 * 60.00277 * 11 10 9 39 39 H 1.08999 * 109.46623 * 179.97438 * 11 10 9 40 40 H 1.09000 * 109.47140 * 180.02562 * 12 11 10 41 41 H 1.09007 * 109.47263 * 299.99826 * 12 11 10 42 42 H 1.09003 * 109.47466 * 59.99845 * 15 13 12 43 43 H 1.08998 * 109.46894 * 179.97438 * 15 13 12 44 44 H 1.09000 * 109.47164 * 300.00122 * 15 13 12 45 45 H 1.08998 * 109.45984 * 294.18123 * 17 16 2 46 46 H 1.09003 * 109.46129 * 54.13843 * 17 16 2 47 47 H 1.09001 * 109.50189 * 299.23742 * 18 17 16 48 48 H 1.09003 * 109.53583 * 179.14046 * 18 17 16 49 49 H 1.09003 * 109.52766 * 62.25629 * 19 18 17 50 50 H 0.97002 * 120.00152 * 180.02562 * 23 22 20 51 51 H 1.09005 * 109.50203 * 297.71266 * 28 19 18 52 52 H 1.09004 * 109.53988 * 177.62086 * 28 19 18 53 53 H 1.09001 * 109.46123 * 305.85775 * 29 16 2 54 54 H 1.08998 * 109.46479 * 65.82469 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2304 5 8 2.4954 -1.8276 1.1390 6 7 1.9672 -0.1042 2.4323 7 6 2.4552 -0.7950 3.6286 8 1 2.2489 -1.8618 3.5417 9 6 3.9635 -0.5766 3.7641 10 6 4.2530 0.9208 3.8861 11 6 3.5438 1.4783 5.1220 12 6 2.0357 1.2599 4.9864 13 6 1.7461 -0.2375 4.8645 14 1 2.1091 -0.7515 5.7544 15 6 0.2379 -0.4559 4.7283 16 7 2.0197 -0.6924 -1.1995 17 6 1.8921 0.1601 -2.3883 18 6 2.5424 -0.5336 -3.5874 19 6 1.8546 -1.8806 -3.8261 20 6 2.5298 -2.5953 -4.9683 21 1 2.9885 -3.5596 -4.8062 22 6 2.5619 -2.0182 -6.2201 23 7 3.1516 -2.6417 -7.2166 24 14 1.7680 -0.3509 -6.5004 25 1 2.7661 0.7205 -6.2535 26 1 1.2835 -0.2626 -7.9015 27 1 0.6231 -0.1849 -5.5694 28 6 1.9598 -2.7306 -2.5569 29 6 1.3265 -1.9731 -1.3877 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 1.5972 0.7895 2.5054 34 1 4.4686 -0.9738 2.8837 35 1 4.3264 -1.0902 4.6543 36 1 5.3275 1.0764 3.9822 37 1 3.8899 1.4348 2.9961 38 1 3.9069 0.9643 6.0119 39 1 3.7505 2.5449 5.2091 40 1 1.5304 1.6574 5.8667 41 1 1.6726 1.7739 4.0964 42 1 -0.1248 0.0581 3.8380 43 1 0.0316 -1.5226 4.6409 44 1 -0.2677 -0.0585 5.6084 45 1 0.8369 0.3351 -2.5981 46 1 2.3889 1.1132 -2.2067 47 1 3.6007 -0.6963 -3.3837 48 1 2.4343 0.0923 -4.4733 49 1 0.8047 -1.7158 -4.0682 50 1 3.1745 -2.2356 -8.0972 51 1 3.0090 -2.9279 -2.3370 52 1 1.4355 -3.6745 -2.7058 53 1 1.4124 -2.5695 -0.4794 54 1 0.2739 -1.7883 -1.6023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541951340.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:46 Heat of formation + Delta-G solvation = -74.636213 kcal Electronic energy + Delta-G solvation = -29355.366306 eV Core-core repulsion = 25710.994343 eV Total energy + Delta-G solvation = -3644.371963 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.59716 -40.23941 -38.78394 -36.10727 -34.69792 -33.98039 -33.41377 -31.76354 -31.43132 -30.28860 -27.55930 -27.19371 -25.47167 -24.20860 -23.54548 -22.86594 -22.31911 -21.32782 -20.17200 -19.96298 -18.86606 -18.07458 -17.42665 -16.69649 -16.45870 -15.93633 -15.88924 -15.79107 -15.43871 -15.20714 -15.00169 -14.83886 -14.76109 -14.54409 -14.21091 -13.99606 -13.73827 -13.52106 -13.33551 -13.23980 -13.11464 -12.95017 -12.83704 -12.64641 -12.58127 -12.54562 -12.36369 -12.05325 -11.91688 -11.78437 -11.62927 -11.41331 -11.38382 -11.22056 -11.02167 -10.97098 -10.89506 -10.63345 -10.38672 -9.91012 -9.12226 -8.28609 -6.32612 1.30205 1.36034 1.47488 1.75843 2.16554 2.34117 3.05904 3.06217 3.67142 3.83355 3.84403 3.86846 3.97331 4.09998 4.14910 4.20437 4.24385 4.26495 4.32325 4.42189 4.51199 4.54874 4.57233 4.58004 4.68578 4.70847 4.73781 4.75853 4.77776 4.83262 4.88290 4.93039 4.98229 5.00460 5.09129 5.17219 5.18054 5.20191 5.21020 5.28394 5.31663 5.35394 5.41368 5.46587 5.50161 5.54896 5.67662 5.70191 5.78614 6.17993 6.19773 6.34190 6.70117 6.73989 7.32191 7.42660 8.89071 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.025737 B = 0.002819 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.673618 B = 9930.066528 C = 9969.582696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.063 3.937 3 H 0.127 0.873 4 C 0.521 3.479 5 O -0.566 6.566 6 N -0.706 5.706 7 C 0.153 3.847 8 H 0.059 0.941 9 C -0.129 4.129 10 C -0.115 4.115 11 C -0.116 4.116 12 C -0.112 4.112 13 C -0.090 4.090 14 H 0.088 0.912 15 C -0.146 4.146 16 N -0.532 5.532 17 C 0.064 3.936 18 C -0.114 4.114 19 C 0.016 3.984 20 C -0.520 4.520 21 H 0.023 0.977 22 C 0.005 3.995 23 N -0.955 5.955 24 Si 0.957 3.043 25 H -0.262 1.262 26 H -0.299 1.299 27 H -0.242 1.242 28 C -0.090 4.090 29 C 0.069 3.931 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.410 0.590 34 H 0.035 0.965 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.058 0.942 43 H 0.043 0.957 44 H 0.070 0.930 45 H 0.042 0.958 46 H 0.093 0.907 47 H 0.048 0.952 48 H 0.044 0.956 49 H 0.023 0.977 50 H 0.265 0.735 51 H 0.036 0.964 52 H 0.048 0.952 53 H 0.078 0.922 54 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.156 15.510 30.209 34.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.049 4.049 3 H 0.144 0.856 4 C 0.307 3.693 5 O -0.444 6.444 6 N -0.360 5.360 7 C 0.049 3.951 8 H 0.078 0.922 9 C -0.168 4.168 10 C -0.153 4.153 11 C -0.153 4.153 12 C -0.149 4.149 13 C -0.109 4.109 14 H 0.107 0.893 15 C -0.203 4.203 16 N -0.256 5.256 17 C -0.063 4.063 18 C -0.151 4.151 19 C -0.003 4.003 20 C -0.558 4.558 21 H 0.041 0.959 22 C -0.191 4.191 23 N -0.596 5.596 24 Si 0.783 3.217 25 H -0.188 1.188 26 H -0.227 1.227 27 H -0.166 1.166 28 C -0.129 4.129 29 C -0.059 4.059 30 H 0.112 0.888 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.248 0.752 34 H 0.054 0.946 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.062 0.938 44 H 0.089 0.911 45 H 0.061 0.939 46 H 0.111 0.889 47 H 0.067 0.933 48 H 0.062 0.938 49 H 0.041 0.959 50 H 0.074 0.926 51 H 0.055 0.945 52 H 0.066 0.934 53 H 0.096 0.904 54 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.282 14.604 30.055 34.000 hybrid contribution -0.544 0.194 -1.196 1.328 sum -6.825 14.798 28.859 33.142 Atomic orbital electron populations 1.22338 0.93513 1.02935 1.04512 1.21747 0.95604 0.99040 0.88512 0.85581 1.20767 0.77430 0.85976 0.85119 1.90672 1.46131 1.21382 1.86202 1.45911 1.63774 1.20426 1.05889 1.20900 0.93236 0.96332 0.84673 0.92247 1.21877 0.95811 0.97865 1.01260 1.21468 1.00307 0.94497 0.98985 1.21529 0.95213 1.01213 0.97376 1.21600 0.96058 0.94403 1.02855 1.21368 0.95736 0.97445 0.96321 0.89340 1.21815 0.94674 1.01330 1.02529 1.61661 1.57540 1.04051 1.02377 1.22128 0.99246 0.95901 0.89064 1.21851 1.00249 0.97094 0.95942 1.19122 0.95142 0.93098 0.92955 1.21416 1.35506 1.04586 0.94321 0.95850 1.26009 0.95495 1.02141 0.95466 1.70079 1.46260 1.41175 1.02072 0.85710 0.80134 0.79426 0.76385 1.18777 1.22697 1.16571 1.21359 0.99479 0.97724 0.94291 1.22089 0.94769 0.90645 0.98350 0.88785 0.90847 0.92947 0.75183 0.94628 0.90529 0.92335 0.92312 0.91609 0.91001 0.90146 0.91440 0.92319 0.93799 0.91126 0.93945 0.88897 0.93317 0.93771 0.95931 0.92614 0.94489 0.93361 0.90362 0.94374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 8.30 71.98 0.60 -2.53 16 2 C 0.06 1.42 2.70 44.17 0.12 1.54 16 3 H 0.13 2.14 7.86 -2.38 -0.02 2.12 16 4 C 0.52 13.03 6.93 87.66 0.61 13.64 16 5 O -0.57 -20.11 13.97 -3.04 -0.04 -20.15 16 6 N -0.71 -11.55 3.54 -442.51 -1.57 -13.11 16 7 C 0.15 2.55 2.23 44.99 0.10 2.65 16 8 H 0.06 1.34 7.58 -2.39 -0.02 1.32 16 9 C -0.13 -2.28 5.60 30.60 0.17 -2.11 16 10 C -0.11 -1.54 5.77 30.60 0.18 -1.36 16 11 C -0.12 -1.00 5.92 30.59 0.18 -0.82 16 12 C -0.11 -0.78 5.03 30.59 0.15 -0.63 16 13 C -0.09 -0.90 2.52 -10.79 -0.03 -0.92 16 14 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 15 C -0.15 -1.41 9.03 71.98 0.65 -0.76 16 16 N -0.53 -17.29 4.35 -875.53 -3.81 -21.10 16 17 C 0.06 2.06 5.22 86.32 0.45 2.51 16 18 C -0.11 -4.90 4.84 30.64 0.15 -4.75 16 19 C 0.02 0.77 1.75 -11.46 -0.02 0.75 16 20 C -0.52 -31.57 9.14 25.60 0.23 -31.33 16 21 H 0.02 1.58 7.99 -2.91 -0.02 1.56 16 22 C 0.00 0.30 5.45 84.65 0.46 0.76 16 23 N -0.96 -62.26 13.96 21.45 0.30 -61.96 16 24 Si 0.96 45.81 24.37 68.60 1.67 47.48 16 25 H -0.26 -11.77 6.89 99.48 0.69 -11.08 16 26 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 27 H -0.24 -10.52 6.53 99.48 0.65 -9.87 16 28 C -0.09 -4.08 5.32 30.64 0.16 -3.91 16 29 C 0.07 2.50 4.17 86.33 0.36 2.86 16 30 H 0.09 1.05 8.14 -2.39 -0.02 1.04 16 31 H 0.07 1.30 7.09 -2.39 -0.02 1.28 16 32 H 0.05 1.14 6.44 -2.39 -0.02 1.12 16 33 H 0.41 4.20 6.65 -92.71 -0.62 3.58 16 34 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.06 0.83 7.60 -2.39 -0.02 0.82 16 38 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.07 0.40 6.51 -2.38 -0.02 0.38 16 42 H 0.06 0.54 7.44 -2.39 -0.02 0.52 16 43 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.04 1.27 7.13 -2.39 -0.02 1.25 16 46 H 0.09 2.45 7.95 -2.39 -0.02 2.44 16 47 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 48 H 0.04 1.92 3.38 -2.39 -0.01 1.92 16 49 H 0.02 1.10 7.19 -2.39 -0.02 1.08 16 50 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 51 H 0.04 1.81 8.14 -2.38 -0.02 1.80 16 52 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 53 H 0.08 2.96 5.90 -2.39 -0.01 2.94 16 54 H 0.04 1.27 6.59 -2.39 -0.02 1.26 16 Total: -1.00 -76.84 388.08 1.25 -75.59 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.17 Total: 17.68 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: 4.53 Total: -24.43 kcal Atomic # 7 Polarization: -91.09 SS G_CDS: -5.07 Total: -96.17 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.04 Total: -20.15 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.67 Total: 47.48 kcal Total: -76.84 1.25 -75.59 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541951340.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.956 kcal (2) G-P(sol) polarization free energy of solvation -76.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds