Wall clock time and date at job start Tue Mar 31 2020 15:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47140 * 2 1 4 4 C 1.53000 * 109.46692 * 240.00122 * 2 1 3 5 5 C 1.52999 * 109.46637 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.47474 * 299.99882 * 5 4 2 7 7 C 1.53001 * 109.47120 * 180.02562 * 5 4 2 8 8 C 1.52998 * 109.47518 * 60.00048 * 5 4 2 9 9 C 1.53001 * 109.47067 * 300.00207 * 8 5 4 10 10 C 1.52997 * 109.46714 * 120.00545 * 2 1 3 11 11 H 1.09001 * 109.47154 * 299.99363 * 10 2 1 12 12 N 1.46498 * 109.47609 * 59.99912 * 10 2 1 13 13 C 1.34774 * 120.00015 * 205.00279 * 12 10 2 14 14 O 1.21588 * 120.00377 * 4.98610 * 13 12 10 15 15 N 1.34780 * 119.99808 * 184.98455 * 13 12 10 16 16 C 1.46919 * 120.63148 * 354.75620 * 15 13 12 17 17 C 1.53198 * 108.77736 * 233.58569 * 16 15 13 18 18 C 1.53041 * 109.31264 * 305.36689 * 17 16 15 19 19 C 1.50697 * 109.46196 * 181.38142 * 18 17 16 20 20 H 1.07998 * 119.99699 * 335.02181 * 19 18 17 21 21 C 1.37869 * 119.99954 * 155.01446 * 19 18 17 22 22 N 1.31517 * 120.00492 * 355.03659 * 21 19 18 23 23 Si 1.86802 * 119.99898 * 175.03945 * 21 19 18 24 24 H 1.48496 * 109.47387 * 90.00172 * 23 21 19 25 25 H 1.48496 * 109.47084 * 329.99905 * 23 21 19 26 26 H 1.48505 * 109.46898 * 209.99955 * 23 21 19 27 27 C 1.53042 * 109.52737 * 61.36875 * 18 17 16 28 28 C 1.46927 * 120.62807 * 174.73312 * 15 13 12 29 29 H 1.09000 * 109.47281 * 300.00053 * 1 2 3 30 30 H 1.09000 * 109.46928 * 59.99304 * 1 2 3 31 31 H 1.08996 * 109.47563 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47487 * 60.00525 * 4 2 1 33 33 H 1.08994 * 109.47228 * 299.99824 * 4 2 1 34 34 H 1.08994 * 109.47202 * 180.02562 * 6 5 4 35 35 H 1.09001 * 109.46730 * 300.00965 * 6 5 4 36 36 H 1.09002 * 109.46442 * 59.99844 * 6 5 4 37 37 H 1.09010 * 109.46962 * 299.99869 * 7 5 4 38 38 H 1.08994 * 109.47390 * 59.99491 * 7 5 4 39 39 H 1.09002 * 109.47088 * 180.02562 * 7 5 4 40 40 H 1.08994 * 109.47588 * 179.97438 * 8 5 4 41 41 H 1.09004 * 109.47095 * 59.99440 * 8 5 4 42 42 H 1.09002 * 109.47269 * 299.99605 * 9 8 5 43 43 H 1.09000 * 109.47427 * 179.97438 * 9 8 5 44 44 H 0.97004 * 119.99849 * 24.99442 * 12 10 2 45 45 H 1.09004 * 109.58955 * 113.79961 * 16 15 13 46 46 H 1.09003 * 109.70761 * 353.44239 * 16 15 13 47 47 H 1.08993 * 109.49619 * 185.41282 * 17 16 15 48 48 H 1.09005 * 109.49262 * 65.31813 * 17 16 15 49 49 H 1.09004 * 109.46008 * 301.35811 * 18 17 16 50 50 H 0.97008 * 119.99535 * 5.04028 * 22 21 19 51 51 H 1.08998 * 109.49611 * 58.57895 * 27 18 17 52 52 H 1.08999 * 109.49659 * 178.67852 * 27 18 17 53 53 H 1.09005 * 109.58638 * 246.20027 * 28 15 13 54 54 H 1.09000 * 109.58828 * 6.48625 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5699 -0.7218 -1.2490 6 6 4.0805 0.7205 -1.2486 7 6 4.0799 -1.4425 -2.4985 8 6 4.0795 -1.4434 0.0002 9 6 3.5695 -0.7222 1.2495 10 6 2.0399 -0.7214 1.2492 11 1 1.6767 -0.2075 2.1392 12 7 1.5516 -2.1026 1.2491 13 6 1.4228 -2.7718 2.4119 14 8 1.6246 -2.2021 3.4669 15 7 1.0702 -4.0727 2.4051 16 6 0.7118 -4.7446 1.1487 17 6 -0.6624 -5.4010 1.3152 18 6 -0.6384 -6.3230 2.5364 19 6 -1.9785 -6.9964 2.6835 20 1 -2.8639 -6.5320 2.2752 21 6 -2.0741 -8.2055 3.3391 22 7 -0.9856 -8.8185 3.7503 23 14 -3.7497 -8.9730 3.6434 24 1 -4.1088 -9.8478 2.4984 25 1 -4.7670 -7.9006 3.7850 26 1 -3.7054 -9.7809 4.8886 27 6 -0.3405 -5.5007 3.7924 28 6 1.0375 -4.8458 3.6541 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6767 -0.2074 -2.1393 33 1 1.6766 -1.7488 -1.2493 34 1 5.1705 0.7201 -1.2488 35 1 3.7174 1.2346 -2.1386 36 1 3.7171 1.2343 -0.3586 37 1 3.7162 -2.4701 -2.4992 38 1 3.7170 -0.9281 -3.3883 39 1 5.1700 -1.4432 -2.4981 40 1 5.1694 -1.4442 0.0002 41 1 3.7157 -2.4710 0.0000 42 1 3.9332 0.3053 1.2498 43 1 3.9321 -1.2366 2.1395 44 1 1.3208 -2.5354 0.4122 45 1 1.4553 -5.5073 0.9172 46 1 0.6727 -4.0150 0.3399 47 1 -0.8977 -5.9832 0.4243 48 1 -1.4193 -4.6294 1.4566 49 1 0.1357 -7.0791 2.4054 50 1 -0.1217 -8.3870 3.6581 51 1 -1.1005 -4.7283 3.9102 52 1 -0.3467 -6.1540 4.6648 53 1 1.8076 -5.6168 3.6269 54 1 1.2152 -4.1815 4.4999 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542854061.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:22 Heat of formation + Delta-G solvation = -79.310231 kcal Electronic energy + Delta-G solvation = -29627.451550 eV Core-core repulsion = 25982.876907 eV Total energy + Delta-G solvation = -3644.574643 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.92084 -40.47502 -38.57134 -36.04626 -35.59374 -33.78230 -32.92792 -32.28160 -31.38684 -28.14810 -27.72658 -27.53351 -26.79847 -24.83576 -24.10933 -23.07643 -22.12284 -21.19452 -20.67269 -19.50678 -19.02546 -18.56048 -17.08086 -16.74443 -16.15859 -15.87862 -15.82772 -15.66083 -15.53066 -15.34188 -15.01679 -14.86052 -14.56737 -14.43509 -14.33897 -14.03453 -13.68212 -13.45808 -13.27503 -13.07256 -12.91089 -12.71601 -12.68115 -12.64009 -12.57880 -12.47028 -12.18960 -12.12724 -12.00863 -11.96872 -11.71821 -11.50848 -11.36108 -11.14565 -11.07651 -10.99494 -10.86949 -10.58937 -10.41833 -10.10328 -9.43819 -8.56172 -6.28032 1.52854 1.61243 1.66506 1.78240 2.12895 2.57745 2.90325 3.21988 3.62704 3.73242 3.74552 3.92568 4.02464 4.10907 4.17446 4.19178 4.26846 4.33176 4.39337 4.44815 4.50280 4.51718 4.52420 4.61525 4.73557 4.75351 4.77385 4.79619 4.89941 4.92221 4.99127 5.01932 5.03253 5.04275 5.07634 5.12189 5.14882 5.18700 5.21940 5.24634 5.29315 5.38134 5.40782 5.50819 5.53799 5.58223 5.63163 5.69818 5.73960 6.00650 6.14304 6.26622 6.70304 6.97026 7.50885 7.55703 8.82491 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.022475 B = 0.002908 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.542637 B = 9626.402815 C = 9785.277099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 H 0.102 0.898 4 C -0.102 4.102 5 C -0.061 4.061 6 C -0.143 4.143 7 C -0.140 4.140 8 C -0.102 4.102 9 C -0.127 4.127 10 C 0.166 3.834 11 H 0.062 0.938 12 N -0.721 5.721 13 C 0.703 3.297 14 O -0.637 6.637 15 N -0.623 5.623 16 C 0.120 3.880 17 C -0.109 4.109 18 C 0.027 3.973 19 C -0.604 4.604 20 H 0.040 0.960 21 C -0.029 4.029 22 N -0.938 5.938 23 Si 1.110 2.890 24 H -0.273 1.273 25 H -0.276 1.276 26 H -0.287 1.287 27 C -0.107 4.107 28 C 0.138 3.862 29 H 0.045 0.955 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.050 0.950 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.049 0.951 42 H 0.088 0.912 43 H 0.037 0.963 44 H 0.402 0.598 45 H 0.072 0.928 46 H 0.097 0.903 47 H 0.069 0.931 48 H 0.044 0.956 49 H 0.012 0.988 50 H 0.260 0.740 51 H 0.036 0.964 52 H 0.038 0.962 53 H 0.062 0.938 54 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.725 19.386 -14.882 26.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 H 0.120 0.880 4 C -0.139 4.139 5 C -0.061 4.061 6 C -0.200 4.200 7 C -0.198 4.198 8 C -0.139 4.139 9 C -0.165 4.165 10 C 0.061 3.939 11 H 0.080 0.920 12 N -0.380 5.380 13 C 0.405 3.595 14 O -0.520 6.520 15 N -0.359 5.359 16 C -0.003 4.003 17 C -0.147 4.147 18 C 0.008 3.992 19 C -0.642 4.642 20 H 0.059 0.941 21 C -0.227 4.227 22 N -0.576 5.576 23 Si 0.933 3.067 24 H -0.199 1.199 25 H -0.201 1.201 26 H -0.212 1.212 27 C -0.147 4.147 28 C 0.014 3.986 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.107 0.893 43 H 0.056 0.944 44 H 0.242 0.758 45 H 0.090 0.910 46 H 0.115 0.885 47 H 0.088 0.912 48 H 0.063 0.937 49 H 0.030 0.970 50 H 0.071 0.929 51 H 0.054 0.946 52 H 0.057 0.943 53 H 0.080 0.920 54 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.140 18.464 -13.553 24.660 hybrid contribution 0.557 0.639 -0.268 0.890 sum 9.697 19.103 -13.821 25.495 Atomic orbital electron populations 1.21810 0.94895 1.01601 1.02089 1.21428 0.95708 1.00533 0.93137 0.87953 1.21664 0.94511 1.00320 0.97425 1.20511 0.94891 0.96192 0.94490 1.21958 1.00902 0.94842 1.02310 1.21848 1.00988 1.00041 0.96873 1.21509 1.00146 0.98663 0.93604 1.21916 0.94913 1.01909 0.97796 1.20894 0.93638 0.80421 0.98947 0.92023 1.45280 1.70808 1.15140 1.06772 1.16019 0.77762 0.81070 0.84639 1.90830 1.60896 1.68358 1.31871 1.47290 1.70759 1.08658 1.09185 1.21753 0.96633 0.96980 0.84900 1.21783 0.95667 0.98122 0.99142 1.18807 0.95771 0.92974 0.91623 1.22320 0.94541 1.08337 1.39007 0.94115 1.27073 1.06738 0.95612 0.93318 1.70888 0.99265 1.39762 1.47699 0.83010 0.71083 0.75520 0.77081 1.19855 1.20130 1.21240 1.21887 0.94808 0.97822 1.00134 1.21376 0.97260 0.93946 0.86017 0.93586 0.90763 0.93711 0.89962 0.92573 0.92736 0.91843 0.92009 0.93107 0.91765 0.92641 0.91900 0.93204 0.89342 0.94446 0.75791 0.90951 0.88481 0.91205 0.93677 0.97017 0.92917 0.94560 0.94340 0.91971 0.90866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.03 71.98 0.65 -1.70 16 2 C -0.09 -1.30 2.24 -10.79 -0.02 -1.33 16 3 H 0.10 1.23 6.43 -2.39 -0.02 1.21 16 4 C -0.10 -1.25 3.84 30.59 0.12 -1.13 16 5 C -0.06 -0.75 0.77 -52.18 -0.04 -0.79 16 6 C -0.14 -1.47 7.78 71.98 0.56 -0.91 16 7 C -0.14 -1.59 8.47 71.98 0.61 -0.98 16 8 C -0.10 -1.68 4.57 30.59 0.14 -1.54 16 9 C -0.13 -2.51 5.32 30.58 0.16 -2.34 16 10 C 0.17 3.56 2.27 44.98 0.10 3.66 16 11 H 0.06 1.66 7.51 -2.39 -0.02 1.64 16 12 N -0.72 -17.99 3.45 -457.89 -1.58 -19.57 16 13 C 0.70 24.31 8.26 179.05 1.48 25.79 16 14 O -0.64 -26.92 15.39 -3.99 -0.06 -26.98 16 15 N -0.62 -21.79 2.97 -836.88 -2.49 -24.28 16 16 C 0.12 3.62 6.38 86.37 0.55 4.17 16 17 C -0.11 -4.15 5.34 30.67 0.16 -3.98 16 18 C 0.03 1.30 1.80 -11.51 -0.02 1.28 16 19 C -0.60 -33.12 8.31 25.60 0.21 -32.90 16 20 H 0.04 2.24 7.81 -2.91 -0.02 2.21 16 21 C -0.03 -1.63 5.45 84.65 0.46 -1.17 16 22 N -0.94 -56.24 13.63 21.44 0.29 -55.94 16 23 Si 1.11 50.15 29.91 68.60 2.05 52.20 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 26 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 27 C -0.11 -4.95 5.34 30.67 0.16 -4.78 16 28 C 0.14 5.46 6.44 86.36 0.56 6.02 16 29 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.04 0.83 7.45 -2.39 -0.02 0.81 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 0.75 6.50 -2.39 -0.02 0.73 16 34 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.06 0.64 4.81 -2.39 -0.01 0.63 16 37 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 38 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.05 0.96 7.60 -2.38 -0.02 0.94 16 42 H 0.09 1.43 6.43 -2.39 -0.02 1.41 16 43 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.40 8.41 4.14 -92.71 -0.38 8.03 16 45 H 0.07 2.09 8.14 -2.38 -0.02 2.08 16 46 H 0.10 2.21 5.66 -2.39 -0.01 2.19 16 47 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 48 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 49 H 0.01 0.61 6.66 -2.38 -0.02 0.59 16 50 H 0.26 15.61 6.65 -92.70 -0.62 15.00 16 51 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 52 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 53 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 54 H 0.07 3.01 6.99 -2.39 -0.02 2.99 16 Total: -1.00 -68.04 393.21 4.69 -63.35 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.63 Total: 23.87 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: 5.85 Total: -12.65 kcal Atomic # 7 Polarization: -96.03 SS G_CDS: -3.77 Total: -99.80 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.06 Total: -26.98 kcal Atomic # 14 Polarization: 50.15 SS G_CDS: 2.05 Total: 52.20 kcal Total: -68.04 4.69 -63.35 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542854061.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.962 kcal (2) G-P(sol) polarization free energy of solvation -68.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds