Wall clock time and date at job start Tue Mar 31 2020 15:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46637 * 2 1 4 4 C 1.52997 * 109.46876 * 240.00465 * 2 1 3 5 5 C 1.52996 * 109.47003 * 179.97438 * 4 2 1 6 6 C 1.52994 * 109.47308 * 299.99709 * 5 4 2 7 7 C 1.52998 * 109.47032 * 179.97438 * 5 4 2 8 8 C 1.53001 * 109.47004 * 59.99665 * 5 4 2 9 9 C 1.52998 * 109.47176 * 299.99851 * 8 5 4 10 10 C 1.52993 * 109.47447 * 119.99793 * 2 1 3 11 11 H 1.09001 * 109.47033 * 60.00449 * 10 2 1 12 12 N 1.46497 * 109.47294 * 300.00192 * 10 2 1 13 13 C 1.34781 * 120.00194 * 155.00008 * 12 10 2 14 14 O 1.21591 * 119.99656 * 354.92067 * 13 12 10 15 15 N 1.34771 * 120.00085 * 174.92355 * 13 12 10 16 16 C 1.46919 * 120.63284 * 4.74419 * 15 13 12 17 17 C 1.52763 * 109.01289 * 233.58772 * 16 15 13 18 18 C 1.53045 * 109.37876 * 305.58851 * 17 16 15 19 19 C 1.50701 * 109.44480 * 181.25056 * 18 17 16 20 20 H 1.08004 * 119.99933 * 239.93212 * 19 18 17 21 21 C 1.37876 * 120.00139 * 59.94136 * 19 18 17 22 22 N 1.31515 * 120.00041 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00159 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47418 * 89.99594 * 23 21 19 25 25 H 1.48506 * 109.47271 * 209.99884 * 23 21 19 26 26 H 1.48505 * 109.46855 * 329.99458 * 23 21 19 27 27 C 1.53035 * 109.53877 * 61.24169 * 18 17 16 28 28 C 1.46929 * 120.63153 * 185.02774 * 15 13 12 29 29 H 1.09003 * 109.47071 * 299.99812 * 1 2 3 30 30 H 1.08990 * 109.47418 * 59.99869 * 1 2 3 31 31 H 1.08997 * 109.46880 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47784 * 59.99133 * 4 2 1 33 33 H 1.09001 * 109.47108 * 299.99247 * 4 2 1 34 34 H 1.09000 * 109.47466 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.47051 * 300.00402 * 6 5 4 36 36 H 1.09003 * 109.46980 * 59.99881 * 6 5 4 37 37 H 1.09001 * 109.47417 * 299.99819 * 7 5 4 38 38 H 1.08993 * 109.47525 * 60.00190 * 7 5 4 39 39 H 1.09004 * 109.47175 * 180.02562 * 7 5 4 40 40 H 1.09004 * 109.46945 * 179.97438 * 8 5 4 41 41 H 1.09001 * 109.47232 * 60.00311 * 8 5 4 42 42 H 1.09001 * 109.47417 * 300.00348 * 9 8 5 43 43 H 1.09002 * 109.46788 * 180.02562 * 9 8 5 44 44 H 0.96996 * 120.00099 * 334.72159 * 12 10 2 45 45 H 1.09004 * 109.58765 * 353.42096 * 16 15 13 46 46 H 1.09001 * 109.58943 * 113.84439 * 16 15 13 47 47 H 1.08997 * 109.56867 * 185.55393 * 17 16 15 48 48 H 1.09004 * 109.38460 * 65.50841 * 17 16 15 49 49 H 1.09000 * 109.46036 * 301.21252 * 18 17 16 50 50 H 0.96993 * 120.00393 * 180.02562 * 22 21 19 51 51 H 1.08997 * 109.49866 * 178.68585 * 27 18 17 52 52 H 1.09001 * 109.52827 * 58.59836 * 27 18 17 53 53 H 1.09002 * 109.58675 * 246.15543 * 28 15 13 54 54 H 1.09005 * 109.58500 * 6.58076 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5700 -0.7206 -1.2496 6 6 4.0795 0.7220 -1.2499 7 6 4.0799 -1.4423 -2.4986 8 6 4.0805 -1.4415 -0.0004 9 6 3.5705 -0.7203 1.2488 10 6 2.0401 -0.7212 1.2492 11 1 1.6769 -1.7489 1.2492 12 7 1.5518 -0.0306 2.4453 13 6 1.4232 -0.7029 3.6064 14 8 1.6235 -1.9018 3.6400 15 7 1.0725 -0.0465 4.7300 16 6 0.7264 1.3807 4.6860 17 6 1.5831 2.1321 5.7034 18 6 1.4179 1.4870 7.0814 19 6 2.2385 2.2459 8.0923 20 1 3.0207 1.7421 8.6406 21 6 1.9905 3.5834 8.3172 22 7 1.0382 4.1970 7.6493 23 14 3.0072 4.5239 9.5707 24 1 4.1961 5.1118 8.9030 25 1 2.1840 5.6096 10.1615 26 1 3.4495 3.5981 10.6442 27 6 1.8936 0.0335 7.0265 28 6 1.0350 -0.7430 6.0231 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6766 -0.2074 -2.1393 33 1 1.6767 -1.7488 -1.2493 34 1 5.1695 0.7224 -1.2497 35 1 3.7157 1.2356 -2.1399 36 1 3.7161 1.2358 -0.3599 37 1 3.7170 -2.4701 -2.4980 38 1 3.7163 -0.9291 -3.3888 39 1 5.1699 -1.4423 -2.4987 40 1 5.1705 -1.4415 -0.0009 41 1 3.7175 -2.4693 -0.0002 42 1 3.9335 0.3075 1.2486 43 1 3.9347 -1.2337 2.1388 44 1 1.3249 0.9115 2.4028 45 1 0.9192 1.7729 3.6875 46 1 -0.3273 1.5090 4.9340 47 1 1.2660 3.1739 5.7491 48 1 2.6294 2.0830 5.4019 49 1 0.3677 1.5147 7.3718 50 1 0.8639 5.1380 7.8072 51 1 1.7976 -0.4183 8.0137 52 1 2.9370 0.0033 6.7124 53 1 0.0070 -0.7914 6.3824 54 1 1.4315 -1.7516 5.9065 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542854063.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:26 Heat of formation + Delta-G solvation = -76.783700 kcal Electronic energy + Delta-G solvation = -29241.709713 eV Core-core repulsion = 25597.244628 eV Total energy + Delta-G solvation = -3644.465085 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.69598 -40.43624 -38.46284 -36.21109 -35.32132 -33.81451 -33.01371 -32.00267 -31.46734 -28.16189 -28.10006 -27.48102 -26.55362 -24.66304 -23.90197 -23.09132 -21.74521 -21.46697 -20.40068 -19.46514 -18.90214 -18.23342 -17.48308 -16.58438 -16.38808 -16.12614 -15.89621 -15.65821 -15.27008 -14.90859 -14.83908 -14.80484 -14.50816 -14.28474 -14.05092 -13.92061 -13.58449 -13.38753 -13.23952 -13.13470 -13.07118 -12.80695 -12.71128 -12.66814 -12.51898 -12.46549 -12.15738 -12.10099 -11.97718 -11.91530 -11.66991 -11.48555 -11.30274 -11.15262 -11.00564 -10.98001 -10.94353 -10.76962 -10.39728 -10.06467 -9.36241 -8.07363 -6.20268 1.41122 1.43370 1.52125 1.73326 2.19818 2.44435 2.94563 3.19053 3.63115 3.70060 3.86291 4.01907 4.11166 4.16608 4.22690 4.32535 4.35333 4.41883 4.46096 4.48129 4.53869 4.58120 4.65856 4.71356 4.72552 4.83630 4.88585 4.90550 4.91093 4.98900 5.02928 5.05375 5.11456 5.13161 5.17010 5.20809 5.21356 5.23828 5.27663 5.28953 5.41252 5.44111 5.48655 5.52587 5.54887 5.64265 5.66489 5.71810 5.99490 6.09621 6.14297 6.40298 6.88695 7.01911 7.47173 7.60816 8.95932 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.018524 B = 0.002889 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.160277 B = 9688.512923 C =10097.320262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.087 0.913 4 C -0.094 4.094 5 C -0.064 4.064 6 C -0.145 4.145 7 C -0.138 4.138 8 C -0.101 4.101 9 C -0.128 4.128 10 C 0.171 3.829 11 H 0.063 0.937 12 N -0.732 5.732 13 C 0.704 3.296 14 O -0.637 6.637 15 N -0.623 5.623 16 C 0.123 3.877 17 C -0.113 4.113 18 C 0.047 3.953 19 C -0.534 4.534 20 H 0.046 0.954 21 C 0.019 3.981 22 N -0.911 5.911 23 Si 0.947 3.053 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.274 1.274 27 C -0.113 4.113 28 C 0.137 3.863 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.034 0.966 44 H 0.403 0.597 45 H 0.088 0.912 46 H 0.065 0.935 47 H 0.081 0.919 48 H 0.025 0.975 49 H 0.004 0.996 50 H 0.262 0.738 51 H 0.063 0.937 52 H 0.039 0.961 53 H 0.067 0.933 54 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.434 -6.253 -21.608 22.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.105 0.895 4 C -0.132 4.132 5 C -0.064 4.064 6 C -0.202 4.202 7 C -0.195 4.195 8 C -0.139 4.139 9 C -0.166 4.166 10 C 0.066 3.934 11 H 0.081 0.919 12 N -0.388 5.388 13 C 0.406 3.594 14 O -0.519 6.519 15 N -0.359 5.359 16 C 0.000 4.000 17 C -0.151 4.151 18 C 0.028 3.972 19 C -0.572 4.572 20 H 0.064 0.936 21 C -0.180 4.180 22 N -0.550 5.550 23 Si 0.774 3.226 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.151 4.151 28 C 0.013 3.987 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.053 0.947 44 H 0.241 0.759 45 H 0.106 0.894 46 H 0.083 0.917 47 H 0.099 0.901 48 H 0.044 0.956 49 H 0.022 0.978 50 H 0.071 0.929 51 H 0.082 0.918 52 H 0.058 0.942 53 H 0.085 0.915 54 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.485 -6.929 -21.593 22.726 hybrid contribution 0.473 1.013 1.353 1.755 sum 1.958 -5.916 -20.240 21.178 Atomic orbital electron populations 1.21799 0.94450 1.01744 1.02171 1.21409 0.96125 1.00391 0.93129 0.89526 1.21595 0.94217 1.00677 0.96742 1.20550 0.95180 0.95913 0.94734 1.21972 1.00870 0.95217 1.02104 1.21826 1.01028 1.00117 0.96573 1.21530 1.00468 0.98778 0.93087 1.21940 0.95441 1.01298 0.97959 1.20894 0.93150 0.96321 0.83022 0.91858 1.45327 1.71205 1.13905 1.08401 1.16000 0.77641 0.84668 0.81121 1.90816 1.60909 1.14422 1.85783 1.47398 1.70992 1.11010 1.06498 1.21649 0.99281 0.79033 1.00028 1.21693 0.96850 1.01410 0.95195 1.18585 0.94995 0.90600 0.92990 1.21537 1.18136 0.95397 1.22144 0.93614 1.25612 0.96200 0.98487 0.97742 1.69935 1.31882 1.10958 1.42240 0.85722 0.78852 0.78371 0.79674 1.20331 1.20787 1.19863 1.21866 0.98155 0.97330 0.97779 1.21428 0.99979 0.95666 0.81586 0.93305 0.90801 0.93430 0.89802 0.91980 0.92840 0.91685 0.92658 0.92700 0.91683 0.92565 0.91498 0.92399 0.91136 0.94725 0.75852 0.89397 0.91671 0.90124 0.95592 0.97791 0.92915 0.91794 0.94221 0.91503 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.04 71.98 0.65 -1.73 16 2 C -0.09 -1.53 2.02 -10.79 -0.02 -1.55 16 3 H 0.09 1.34 6.43 -2.39 -0.02 1.32 16 4 C -0.09 -1.31 4.01 30.59 0.12 -1.18 16 5 C -0.06 -0.90 0.77 -52.18 -0.04 -0.94 16 6 C -0.14 -1.96 7.78 71.98 0.56 -1.40 16 7 C -0.14 -1.62 8.47 71.98 0.61 -1.01 16 8 C -0.10 -1.85 4.73 30.59 0.14 -1.71 16 9 C -0.13 -3.00 5.22 30.61 0.16 -2.84 16 10 C 0.17 4.06 1.94 45.00 0.09 4.14 16 11 H 0.06 1.82 7.51 -2.39 -0.02 1.80 16 12 N -0.73 -20.09 4.29 -457.76 -1.96 -22.05 16 13 C 0.70 25.25 8.26 179.05 1.48 26.73 16 14 O -0.64 -26.97 15.41 -4.00 -0.06 -27.03 16 15 N -0.62 -22.56 2.98 -837.72 -2.49 -25.05 16 16 C 0.12 4.24 6.40 86.22 0.55 4.80 16 17 C -0.11 -4.95 5.14 30.53 0.16 -4.79 16 18 C 0.05 2.26 2.07 -11.51 -0.02 2.24 16 19 C -0.53 -28.86 8.56 25.60 0.22 -28.64 16 20 H 0.05 2.48 7.74 -2.91 -0.02 2.46 16 21 C 0.02 1.00 5.30 84.65 0.45 1.45 16 22 N -0.91 -49.89 11.30 21.45 0.24 -49.65 16 23 Si 0.95 42.77 29.54 68.60 2.03 44.80 16 24 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 26 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 27 C -0.11 -4.74 5.30 30.67 0.16 -4.57 16 28 C 0.14 5.12 6.42 86.36 0.55 5.68 16 29 H 0.05 0.89 7.45 -2.39 -0.02 0.87 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.05 0.83 4.81 -2.39 -0.01 0.82 16 37 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.07 1.58 6.43 -2.39 -0.02 1.56 16 43 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.40 9.57 5.86 -92.71 -0.54 9.03 16 45 H 0.09 2.46 5.57 -2.38 -0.01 2.44 16 46 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.08 3.95 6.03 -2.39 -0.01 3.93 16 48 H 0.03 1.16 8.14 -2.38 -0.02 1.15 16 49 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 50 H 0.26 13.67 8.31 -92.71 -0.77 12.90 16 51 H 0.06 2.58 8.14 -2.39 -0.02 2.57 16 52 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 53 H 0.07 2.36 8.14 -2.39 -0.02 2.35 16 54 H 0.08 2.93 7.03 -2.38 -0.02 2.92 16 Total: -1.00 -62.67 396.00 3.88 -58.79 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: 0.31 Total: 25.53 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: 5.82 Total: -5.33 kcal Atomic # 7 Polarization: -92.54 SS G_CDS: -4.22 Total: -96.75 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.06 Total: -27.03 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -62.67 3.88 -58.79 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542854063.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.997 kcal (2) G-P(sol) polarization free energy of solvation -62.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds