Wall clock time and date at job start Tue Mar 31 2020 15:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47370 * 2 1 4 4 C 1.53007 * 109.47067 * 119.99726 * 2 1 3 5 5 C 1.52999 * 109.47257 * 180.02562 * 4 2 1 6 6 C 1.52993 * 109.47257 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47151 * 59.99503 * 5 4 2 8 8 C 1.53000 * 109.47049 * 299.99827 * 5 4 2 9 9 C 1.53000 * 109.47016 * 59.99707 * 8 5 4 10 10 C 1.52996 * 109.47760 * 300.00247 * 9 8 5 11 11 H 1.09000 * 109.46773 * 300.00045 * 10 9 8 12 12 N 1.46492 * 109.47577 * 180.02562 * 10 9 8 13 13 C 1.34780 * 120.00169 * 85.00042 * 12 10 9 14 14 O 1.21584 * 119.99698 * 5.17021 * 13 12 10 15 15 N 1.34777 * 119.99876 * 185.17797 * 13 12 10 16 16 C 1.46928 * 120.62826 * 174.86190 * 15 13 12 17 17 C 1.53193 * 108.77258 * 233.58251 * 16 15 13 18 18 C 1.53045 * 109.31382 * 305.36567 * 17 16 15 19 19 C 1.50696 * 109.46028 * 181.38708 * 18 17 16 20 20 H 1.07995 * 120.00240 * 354.59610 * 19 18 17 21 21 C 1.37875 * 119.99937 * 174.59863 * 19 18 17 22 22 N 1.31513 * 120.00106 * 159.46679 * 21 19 18 23 23 Si 1.86804 * 119.99995 * 339.19506 * 21 19 18 24 24 H 1.48497 * 109.47168 * 180.27597 * 23 21 19 25 25 H 1.48507 * 109.46726 * 300.27354 * 23 21 19 26 26 H 1.48495 * 109.47400 * 60.27020 * 23 21 19 27 27 C 1.53034 * 109.53660 * 61.36160 * 18 17 16 28 28 C 1.46923 * 120.63436 * 354.83237 * 15 13 12 29 29 H 1.09004 * 109.47370 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47617 * 300.00545 * 1 2 3 31 31 H 1.09001 * 109.47362 * 60.00803 * 1 2 3 32 32 H 1.09000 * 109.47274 * 60.00046 * 4 2 1 33 33 H 1.09005 * 109.46680 * 300.00302 * 4 2 1 34 34 H 1.08997 * 109.47418 * 180.02562 * 6 5 4 35 35 H 1.09008 * 109.47025 * 299.99748 * 6 5 4 36 36 H 1.09000 * 109.47262 * 59.99870 * 6 5 4 37 37 H 1.08994 * 109.47214 * 300.00268 * 7 5 4 38 38 H 1.08999 * 109.46992 * 60.00562 * 7 5 4 39 39 H 1.08997 * 109.47083 * 179.97438 * 7 5 4 40 40 H 1.09004 * 109.47249 * 300.00405 * 8 5 4 41 41 H 1.08997 * 109.47698 * 180.02562 * 8 5 4 42 42 H 1.09008 * 109.47078 * 180.02562 * 9 8 5 43 43 H 1.08998 * 109.47076 * 60.00678 * 9 8 5 44 44 H 0.97005 * 120.00265 * 265.00179 * 12 10 9 45 45 H 1.08998 * 109.59214 * 113.79742 * 16 15 13 46 46 H 1.09000 * 109.70370 * 353.43315 * 16 15 13 47 47 H 1.09001 * 109.50185 * 185.40991 * 17 16 15 48 48 H 1.09003 * 109.49888 * 65.31740 * 17 16 15 49 49 H 1.09003 * 109.45469 * 301.35497 * 18 17 16 50 50 H 0.96998 * 120.00264 * 353.36513 * 22 21 19 51 51 H 1.09000 * 109.50167 * 58.59288 * 27 18 17 52 52 H 1.09002 * 109.49282 * 178.68768 * 27 18 17 53 53 H 1.09004 * 109.58588 * 246.20979 * 28 15 13 54 54 H 1.08998 * 109.58473 * 6.48495 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7207 1.2497 6 6 4.0799 -1.4413 2.4992 7 6 4.0794 0.7220 1.2498 8 6 4.0804 -1.4417 0.0005 9 6 3.5704 -0.7205 -1.2488 10 6 2.0404 -0.7210 -1.2492 11 1 1.6775 -1.7488 -1.2493 12 7 1.5522 -0.0310 -2.4456 13 6 1.4239 -0.7039 -3.6064 14 8 1.6229 -1.9029 -3.6392 15 7 1.0751 -0.0476 -4.7307 16 6 1.0404 -0.7442 -6.0239 17 6 1.8997 0.0333 -7.0259 18 6 1.4225 1.4864 -7.0816 19 6 2.2435 2.2461 -8.0914 20 1 3.0826 1.7680 -8.5748 21 6 1.9234 3.5516 -8.3982 22 7 2.8256 4.3398 -8.9408 23 14 0.2060 4.1988 -8.0501 24 1 0.1168 5.6190 -8.4744 25 1 -0.7885 3.3936 -8.8038 26 1 -0.0757 4.0979 -6.5956 27 6 1.5846 2.1315 -5.7034 28 6 0.7218 1.3779 -4.6865 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 1.6766 -1.7489 1.2494 33 1 1.6765 -0.2073 2.1393 34 1 5.1699 -1.4405 2.4998 35 1 3.7162 -0.9272 3.3890 36 1 3.7169 -2.4691 2.4996 37 1 3.7161 1.2357 0.3599 38 1 3.7158 1.2356 2.1398 39 1 5.1694 0.7224 1.2506 40 1 3.7174 -2.4695 0.0003 41 1 5.1704 -1.4418 0.0009 42 1 3.9338 -1.2345 -2.1388 43 1 3.9334 0.3072 -1.2487 44 1 1.3211 0.9101 -2.4025 45 1 0.0131 -0.7938 -6.3849 46 1 1.4364 -1.7531 -5.9086 47 1 1.8059 -0.4186 -8.0134 48 1 2.9426 0.0048 -6.7100 49 1 0.3726 1.5127 -7.3735 50 1 3.7413 4.0347 -9.0369 51 1 2.6304 2.0833 -5.3998 52 1 1.2664 3.1730 -5.7496 53 1 -0.3316 1.5012 -4.9383 54 1 0.9065 1.7692 -3.6861 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542854064.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:30 Heat of formation + Delta-G solvation = -79.821121 kcal Electronic energy + Delta-G solvation = -29314.623407 eV Core-core repulsion = 25670.026609 eV Total energy + Delta-G solvation = -3644.596797 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.74191 -40.48277 -38.58603 -36.24292 -35.39197 -33.88397 -33.22367 -32.27283 -31.56634 -28.17661 -28.07317 -27.48543 -26.52518 -24.28272 -24.09336 -23.08100 -21.72719 -21.45518 -20.45406 -19.68336 -19.45440 -18.79005 -17.52195 -16.46971 -16.28558 -15.92542 -15.84545 -15.66961 -15.35836 -15.24219 -14.91040 -14.84908 -14.68319 -14.35736 -14.23196 -13.93607 -13.63524 -13.59803 -13.35017 -13.24806 -13.10564 -12.72923 -12.67772 -12.54576 -12.49607 -12.30655 -12.12329 -12.09954 -11.93246 -11.82287 -11.67911 -11.51719 -11.34928 -11.18809 -11.15994 -10.98227 -10.96042 -10.80953 -10.42146 -10.10628 -9.43530 -8.68489 -6.32469 1.49177 1.58331 1.67307 1.78003 2.16414 2.55471 2.90367 3.06155 3.61304 3.68563 3.84222 3.98577 4.02321 4.08345 4.15215 4.24431 4.28195 4.30969 4.39941 4.44669 4.46721 4.52273 4.55645 4.66594 4.69702 4.79304 4.80987 4.82922 4.89377 4.89731 4.96576 5.02335 5.02579 5.08385 5.10333 5.12044 5.15030 5.15536 5.21178 5.25046 5.27180 5.38916 5.42208 5.48096 5.52383 5.58190 5.62771 5.68827 5.76503 6.02880 6.04540 6.15462 6.59140 6.98213 7.44278 7.57171 8.64634 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.019003 B = 0.003012 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.082316 B = 9294.106431 C = 9492.511205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.088 0.912 4 C -0.095 4.095 5 C -0.064 4.064 6 C -0.139 4.139 7 C -0.145 4.145 8 C -0.101 4.101 9 C -0.128 4.128 10 C 0.172 3.828 11 H 0.063 0.937 12 N -0.731 5.731 13 C 0.704 3.296 14 O -0.636 6.636 15 N -0.624 5.624 16 C 0.137 3.863 17 C -0.107 4.107 18 C 0.021 3.979 19 C -0.606 4.606 20 H 0.008 0.992 21 C -0.019 4.019 22 N -0.940 5.940 23 Si 1.081 2.919 24 H -0.296 1.296 25 H -0.267 1.267 26 H -0.229 1.229 27 C -0.127 4.127 28 C 0.115 3.885 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.032 0.968 43 H 0.070 0.930 44 H 0.405 0.595 45 H 0.080 0.920 46 H 0.075 0.925 47 H 0.061 0.939 48 H 0.029 0.971 49 H 0.034 0.966 50 H 0.250 0.750 51 H 0.036 0.964 52 H 0.067 0.933 53 H 0.085 0.915 54 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.034 -7.485 26.177 27.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.106 0.894 4 C -0.133 4.133 5 C -0.064 4.064 6 C -0.196 4.196 7 C -0.202 4.202 8 C -0.139 4.139 9 C -0.167 4.167 10 C 0.067 3.933 11 H 0.081 0.919 12 N -0.388 5.388 13 C 0.406 3.594 14 O -0.518 6.518 15 N -0.360 5.360 16 C 0.013 3.987 17 C -0.146 4.146 18 C 0.001 3.999 19 C -0.644 4.644 20 H 0.026 0.974 21 C -0.216 4.216 22 N -0.576 5.576 23 Si 0.901 3.099 24 H -0.222 1.222 25 H -0.192 1.192 26 H -0.152 1.152 27 C -0.166 4.166 28 C -0.008 4.008 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.051 0.949 43 H 0.089 0.911 44 H 0.243 0.757 45 H 0.098 0.902 46 H 0.094 0.906 47 H 0.080 0.920 48 H 0.048 0.952 49 H 0.052 0.948 50 H 0.059 0.941 51 H 0.055 0.945 52 H 0.086 0.914 53 H 0.104 0.896 54 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.845 -7.041 25.961 27.527 hybrid contribution 1.961 -0.967 -1.000 2.404 sum -3.884 -8.008 24.961 26.500 Atomic orbital electron populations 1.21799 0.94236 1.01779 1.02320 1.21410 0.96275 1.00388 0.92958 0.89409 1.21603 0.94084 1.00720 0.96889 1.20549 0.95300 0.95887 0.94628 1.21832 1.00987 1.00148 0.96639 1.21974 1.00815 0.95221 1.02169 1.21531 1.00405 0.98806 0.93194 1.21939 0.95658 1.01274 0.97848 1.20873 0.92963 0.96396 0.83096 0.91857 1.45309 1.71078 1.14046 1.08362 1.15998 0.77580 0.84670 0.81139 1.90831 1.60678 1.14549 1.85758 1.47346 1.71182 1.11125 1.06391 1.21447 1.00381 0.95537 0.81286 1.21735 0.97940 0.96871 0.98004 1.18924 0.96111 0.92210 0.92607 1.22220 1.15683 0.99621 1.26856 0.97394 1.27326 1.07477 0.93789 0.93052 1.70964 1.03209 1.38273 1.45108 0.83656 0.71238 0.75211 0.79788 1.22250 1.19230 1.15222 1.22214 0.98622 0.99606 0.96122 1.21846 0.99784 0.79025 1.00131 0.93484 0.90809 0.92965 0.92004 0.89746 0.92671 0.91632 0.92706 0.92546 0.91619 0.92986 0.92426 0.91676 0.94906 0.91108 0.75673 0.90215 0.90611 0.92036 0.95183 0.94784 0.94141 0.94544 0.91414 0.89649 0.88594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.04 71.98 0.65 -1.37 16 2 C -0.09 -1.35 2.02 -10.79 -0.02 -1.37 16 3 H 0.09 1.17 6.43 -2.38 -0.02 1.15 16 4 C -0.10 -1.19 4.01 30.60 0.12 -1.07 16 5 C -0.06 -0.84 0.77 -52.18 -0.04 -0.88 16 6 C -0.14 -1.55 8.47 71.98 0.61 -0.94 16 7 C -0.14 -1.83 7.78 71.98 0.56 -1.27 16 8 C -0.10 -1.80 4.73 30.59 0.14 -1.65 16 9 C -0.13 -2.88 5.22 30.59 0.16 -2.72 16 10 C 0.17 3.75 1.94 44.99 0.09 3.83 16 11 H 0.06 1.71 7.51 -2.39 -0.02 1.69 16 12 N -0.73 -17.99 4.30 -457.83 -1.97 -19.96 16 13 C 0.70 23.21 8.26 179.05 1.48 24.69 16 14 O -0.64 -25.60 15.41 -3.98 -0.06 -25.66 16 15 N -0.62 -20.14 2.97 -836.92 -2.49 -22.62 16 16 C 0.14 4.68 6.41 86.36 0.55 5.23 16 17 C -0.11 -4.34 5.30 30.67 0.16 -4.17 16 18 C 0.02 0.91 1.65 -11.51 -0.02 0.89 16 19 C -0.61 -33.97 8.80 25.60 0.23 -33.75 16 20 H 0.01 0.49 7.99 -2.91 -0.02 0.47 16 21 C -0.02 -1.07 5.28 84.65 0.45 -0.62 16 22 N -0.94 -58.59 13.69 21.45 0.29 -58.30 16 23 Si 1.08 46.94 26.42 68.60 1.81 48.75 16 24 H -0.30 -13.28 7.11 99.48 0.71 -12.58 16 25 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 26 H -0.23 -8.17 5.82 99.48 0.58 -7.59 16 27 C -0.13 -4.84 5.07 30.67 0.16 -4.68 16 28 C 0.11 3.25 6.43 86.36 0.56 3.81 16 29 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.05 0.79 7.45 -2.39 -0.02 0.77 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 36 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.06 0.78 4.81 -2.39 -0.01 0.77 16 38 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 41 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 43 H 0.07 1.50 6.43 -2.39 -0.02 1.49 16 44 H 0.40 8.08 5.85 -92.70 -0.54 7.54 16 45 H 0.08 2.41 8.14 -2.39 -0.02 2.40 16 46 H 0.08 2.71 7.04 -2.39 -0.02 2.69 16 47 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 48 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.03 1.44 6.76 -2.39 -0.02 1.42 16 50 H 0.25 15.97 8.73 -92.71 -0.81 15.16 16 51 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 52 H 0.07 2.60 5.11 -2.39 -0.01 2.59 16 53 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 54 H 0.10 2.08 5.56 -2.39 -0.01 2.07 16 Total: -1.00 -70.84 392.10 3.57 -67.27 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: 0.15 Total: 26.57 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: 5.83 Total: -16.05 kcal Atomic # 7 Polarization: -96.72 SS G_CDS: -4.16 Total: -100.88 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.06 Total: -25.66 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 1.81 Total: 48.75 kcal Total: -70.84 3.57 -67.27 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542854064.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.551 kcal (2) G-P(sol) polarization free energy of solvation -70.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds