Wall clock time and date at job start Tue Mar 31 2020 15:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09007 * 109.46987 * 2 1 4 4 C 1.52991 * 109.47425 * 239.99872 * 2 1 3 5 5 C 1.52999 * 109.47388 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.46754 * 60.00347 * 5 4 2 7 7 C 1.53005 * 109.47007 * 299.99955 * 6 5 4 8 8 H 1.08997 * 109.47203 * 299.99818 * 7 6 5 9 9 N 1.46506 * 109.46913 * 179.97438 * 7 6 5 10 10 C 1.34770 * 119.99957 * 84.99932 * 9 7 6 11 11 O 1.21284 * 120.00121 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99989 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.47236 * 173.53821 * 12 10 9 14 14 C 1.46842 * 111.00157 * 169.10545 * 13 12 10 15 15 C 1.53036 * 109.52510 * 185.83615 * 14 13 12 16 16 C 1.53117 * 109.28224 * 300.82595 * 15 14 13 17 17 C 1.50695 * 109.52662 * 177.55943 * 16 15 14 18 18 H 1.08007 * 119.99467 * 275.01988 * 17 16 15 19 19 C 1.37871 * 120.00259 * 95.01529 * 17 16 15 20 20 N 1.31513 * 120.00274 * 173.62434 * 19 17 16 21 21 Si 1.86803 * 119.99842 * 353.61852 * 19 17 16 22 22 H 1.48504 * 109.47026 * 92.06672 * 21 19 17 23 23 H 1.48504 * 109.47053 * 212.06112 * 21 19 17 24 24 H 1.48492 * 109.47208 * 332.06067 * 21 19 17 25 25 C 1.53119 * 109.15917 * 57.64996 * 16 15 14 26 26 C 1.46848 * 110.99870 * 293.32170 * 13 12 10 27 27 C 1.52996 * 109.47146 * 119.99405 * 2 1 3 28 28 H 1.08998 * 109.47789 * 300.00247 * 27 2 1 29 29 C 1.53009 * 109.46756 * 60.00344 * 27 2 1 30 30 H 1.08995 * 109.46709 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46638 * 60.00321 * 1 2 3 32 32 H 1.08998 * 109.46978 * 299.99852 * 1 2 3 33 33 H 1.08997 * 109.47259 * 300.00054 * 4 2 1 34 34 H 1.09010 * 109.47035 * 59.99828 * 4 2 1 35 35 H 1.09000 * 109.47594 * 179.97438 * 5 4 2 36 36 H 1.08997 * 109.47451 * 300.00532 * 5 4 2 37 37 H 1.09007 * 109.47066 * 59.99807 * 6 5 4 38 38 H 1.08996 * 109.47764 * 179.97438 * 6 5 4 39 39 H 0.97005 * 119.99932 * 264.99568 * 9 7 6 40 40 H 1.09002 * 109.47282 * 293.53486 * 12 10 9 41 41 H 1.08995 * 109.46842 * 53.53765 * 12 10 9 42 42 H 1.09002 * 109.46527 * 305.85649 * 14 13 12 43 43 H 1.09001 * 109.45889 * 65.82107 * 14 13 12 44 44 H 1.08998 * 109.50635 * 180.88179 * 15 14 13 45 45 H 1.09002 * 109.49949 * 60.76722 * 15 14 13 46 46 H 1.09005 * 109.52047 * 297.75113 * 16 15 14 47 47 H 0.97000 * 120.00568 * 180.02562 * 20 19 17 48 48 H 1.09004 * 109.50272 * 182.40681 * 25 16 15 49 49 H 1.08997 * 109.53727 * 62.31242 * 25 16 15 50 50 H 1.09000 * 109.45992 * 294.17420 * 26 13 12 51 51 H 1.08994 * 109.46794 * 54.14245 * 26 13 12 52 52 H 1.09000 * 109.47007 * 60.00223 * 29 27 2 53 53 H 1.08997 * 109.46845 * 179.97438 * 29 27 2 54 54 H 1.08992 * 109.47005 * 299.99906 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 3.5701 -0.7207 -1.2494 6 6 4.0805 -1.4416 -0.0002 7 6 3.5705 -0.7203 1.2491 8 1 3.9335 0.3074 1.2489 9 7 4.0587 -1.4111 2.4453 10 6 5.2806 -1.1253 2.9368 11 8 5.9759 -0.2960 2.3892 12 6 5.7827 -1.8354 4.1676 13 7 7.1840 -1.4662 4.4086 14 6 7.6300 -1.9273 5.7295 15 6 9.0405 -1.4017 6.0053 16 6 9.9913 -1.9109 4.9184 17 6 11.3697 -1.3479 5.1509 18 1 11.6248 -0.3699 4.7702 19 6 12.3051 -2.0813 5.8495 20 7 13.5430 -1.6476 5.9451 21 14 11.8141 -3.6909 6.6605 22 1 12.0636 -4.8143 5.7219 23 1 12.6171 -3.8888 7.8939 24 1 10.3716 -3.6491 7.0103 25 6 9.4777 -1.4579 3.5489 26 6 8.0545 -1.9818 3.3443 27 6 2.0401 -0.7211 1.2493 28 1 1.6768 -0.2073 2.1393 29 6 1.5301 -2.1637 1.2493 30 1 -0.3632 -1.0276 0.0005 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 1.6768 -1.7489 -1.2491 34 1 1.6767 -0.2074 -2.1392 35 1 3.9335 -1.2349 -2.1392 36 1 3.9331 0.3071 -1.2496 37 1 3.7175 -2.4694 0.0000 38 1 5.1705 -1.4417 -0.0005 39 1 3.5025 -2.0740 2.8835 40 1 5.1777 -1.5453 5.0267 41 1 5.7110 -2.9129 4.0200 42 1 6.9477 -1.5548 6.4937 43 1 7.6380 -3.0171 5.7501 44 1 9.3774 -1.7570 6.9791 45 1 9.0305 -0.3117 5.9985 46 1 10.0314 -2.9997 4.9504 47 1 14.2012 -2.1637 6.4363 48 1 10.1270 -1.8534 2.7677 49 1 9.4747 -0.3689 3.5028 50 1 8.0606 -3.0714 3.3761 51 1 7.6807 -1.6490 2.3761 52 1 1.8935 -2.6775 0.3594 53 1 1.8938 -2.6776 2.1391 54 1 0.4401 -2.1637 1.2493 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542878553.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:34 Heat of formation + Delta-G solvation = -83.150551 kcal Electronic energy + Delta-G solvation = -28539.371239 eV Core-core repulsion = 24894.630067 eV Total energy + Delta-G solvation = -3644.741172 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.44562 -40.23314 -39.04903 -35.65762 -35.40777 -33.72294 -33.49305 -31.63231 -31.62107 -29.38403 -28.10759 -26.74573 -26.23017 -23.98195 -23.33789 -22.86303 -22.28039 -21.16925 -20.43613 -19.43349 -18.95887 -18.01881 -17.46387 -16.75607 -16.46174 -16.32917 -15.89165 -15.77226 -15.50237 -15.23487 -14.99437 -14.80105 -14.62337 -14.53306 -14.28457 -14.01239 -13.77103 -13.45595 -13.27656 -13.19753 -13.02410 -12.86270 -12.77928 -12.72918 -12.50436 -12.29114 -12.23736 -12.10589 -12.01061 -11.71009 -11.58178 -11.41773 -11.28889 -11.12399 -11.06253 -11.01868 -10.94880 -10.58389 -10.51802 -9.95103 -9.16312 -8.27058 -6.29919 1.34775 1.37314 1.50272 1.73515 2.12736 2.37499 3.06706 3.08120 3.65362 3.72968 3.83559 3.94184 4.11304 4.13628 4.16249 4.19625 4.27354 4.36450 4.39294 4.40428 4.43933 4.49687 4.54188 4.57986 4.68242 4.73530 4.75746 4.77317 4.82466 4.84385 4.96516 4.98406 5.00631 5.04394 5.05655 5.13864 5.15907 5.23022 5.25362 5.30506 5.31275 5.39020 5.44446 5.50251 5.58118 5.62564 5.69296 5.70223 5.76889 6.14469 6.20282 6.37466 6.68695 6.76573 7.34668 7.40417 8.90831 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.031764 B = 0.002360 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.285633 B =11864.012381 C =12209.561581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 H 0.059 0.941 4 C -0.111 4.111 5 C -0.117 4.117 6 C -0.126 4.126 7 C 0.153 3.847 8 H 0.054 0.946 9 N -0.715 5.715 10 C 0.510 3.490 11 O -0.566 6.566 12 C 0.037 3.963 13 N -0.540 5.540 14 C 0.065 3.935 15 C -0.107 4.107 16 C 0.016 3.984 17 C -0.515 4.515 18 H 0.020 0.980 19 C 0.003 3.997 20 N -0.955 5.955 21 Si 0.948 3.052 22 H -0.272 1.272 23 H -0.288 1.288 24 H -0.232 1.232 25 C -0.093 4.093 26 C 0.071 3.929 27 C -0.084 4.084 28 H 0.076 0.924 29 C -0.153 4.153 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.049 0.951 37 H 0.080 0.920 38 H 0.034 0.966 39 H 0.413 0.587 40 H 0.130 0.870 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.040 0.960 44 H 0.054 0.946 45 H 0.042 0.958 46 H 0.030 0.970 47 H 0.265 0.735 48 H 0.047 0.953 49 H 0.035 0.965 50 H 0.035 0.965 51 H 0.069 0.931 52 H 0.064 0.936 53 H 0.061 0.939 54 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.155 -5.224 -10.126 36.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.104 4.104 3 H 0.077 0.923 4 C -0.149 4.149 5 C -0.155 4.155 6 C -0.164 4.164 7 C 0.048 3.952 8 H 0.073 0.927 9 N -0.369 5.369 10 C 0.296 3.704 11 O -0.443 6.443 12 C -0.094 4.094 13 N -0.265 5.265 14 C -0.062 4.062 15 C -0.145 4.145 16 C -0.003 4.003 17 C -0.553 4.553 18 H 0.038 0.962 19 C -0.193 4.193 20 N -0.596 5.596 21 Si 0.771 3.229 22 H -0.197 1.197 23 H -0.214 1.214 24 H -0.154 1.154 25 C -0.131 4.131 26 C -0.057 4.057 27 C -0.103 4.103 28 H 0.095 0.905 29 C -0.210 4.210 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.053 0.947 39 H 0.251 0.749 40 H 0.148 0.852 41 H 0.102 0.898 42 H 0.112 0.888 43 H 0.058 0.942 44 H 0.073 0.927 45 H 0.061 0.939 46 H 0.048 0.952 47 H 0.073 0.927 48 H 0.065 0.935 49 H 0.054 0.946 50 H 0.053 0.947 51 H 0.088 0.912 52 H 0.083 0.917 53 H 0.080 0.920 54 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -33.462 -4.151 -10.437 35.297 hybrid contribution 0.920 -1.044 0.466 1.467 sum -32.542 -5.195 -9.972 34.430 Atomic orbital electron populations 1.21844 0.93719 1.02647 1.01940 1.21096 0.96547 0.98807 0.93989 0.92264 1.21632 0.93999 1.01615 0.97604 1.21483 0.96799 1.00139 0.97088 1.21889 0.99306 1.00568 0.94673 1.20902 0.94626 0.95625 0.84012 0.92726 1.46011 1.17204 1.43973 1.29761 1.20979 0.81512 0.82313 0.85568 1.90715 1.57140 1.34999 1.61457 1.22073 0.90622 0.99357 0.97305 1.61472 1.01196 1.61254 1.02586 1.22148 0.96577 0.97598 0.89864 1.21751 0.93901 1.00055 0.98836 1.19134 0.92911 0.95341 0.92963 1.21311 0.96866 1.02858 1.34251 0.96179 1.26074 0.94318 1.02207 0.96664 1.70098 1.03879 1.41756 1.43862 0.85738 0.80373 0.78779 0.78014 1.19724 1.21407 1.15437 1.21426 0.94406 0.99472 0.97830 1.22014 0.92756 0.96112 0.94823 1.21320 0.91562 0.98397 0.98994 0.90541 1.22023 1.02091 0.94477 1.02420 0.91368 0.92378 0.92586 0.90480 0.91297 0.91319 0.93186 0.90160 0.94692 0.74896 0.85233 0.89801 0.88763 0.94200 0.92745 0.93874 0.95159 0.92671 0.93457 0.94618 0.94710 0.91244 0.91721 0.92039 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.84 71.98 0.64 -0.46 16 2 C -0.09 -0.91 2.49 -10.80 -0.03 -0.93 16 3 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 4 C -0.11 -1.16 4.93 30.59 0.15 -1.01 16 5 C -0.12 -1.74 5.92 30.59 0.18 -1.56 16 6 C -0.13 -2.21 5.22 30.60 0.16 -2.05 16 7 C 0.15 2.66 2.15 45.01 0.10 2.76 16 8 H 0.05 1.33 7.58 -2.39 -0.02 1.31 16 9 N -0.72 -12.02 5.00 -442.46 -2.21 -14.23 16 10 C 0.51 12.91 7.32 87.66 0.64 13.55 16 11 O -0.57 -20.59 14.41 -3.04 -0.04 -20.63 16 12 C 0.04 0.81 5.45 85.56 0.47 1.28 16 13 N -0.54 -17.50 4.34 -900.94 -3.91 -21.41 16 14 C 0.07 2.05 5.46 86.33 0.47 2.52 16 15 C -0.11 -4.50 5.16 30.65 0.16 -4.34 16 16 C 0.02 0.75 1.71 -11.46 -0.02 0.73 16 17 C -0.51 -30.87 8.86 25.60 0.23 -30.64 16 18 H 0.02 1.36 8.06 -2.91 -0.02 1.33 16 19 C 0.00 0.20 5.47 84.65 0.46 0.66 16 20 N -0.96 -61.86 13.96 21.44 0.30 -61.56 16 21 Si 0.95 44.59 26.50 68.60 1.82 46.40 16 22 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 23 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 24 H -0.23 -9.68 6.03 99.48 0.60 -9.08 16 25 C -0.09 -4.20 5.36 30.65 0.16 -4.04 16 26 C 0.07 2.56 5.12 86.33 0.44 3.00 16 27 C -0.08 -0.92 2.41 -10.78 -0.03 -0.94 16 28 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 29 C -0.15 -1.09 7.98 71.99 0.57 -0.51 16 30 H 0.07 0.40 6.43 -2.39 -0.02 0.39 16 31 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.08 0.66 6.43 -2.39 -0.02 0.65 16 34 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.08 1.15 6.43 -2.38 -0.02 1.14 16 38 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.41 4.06 6.87 -92.70 -0.64 3.42 16 40 H 0.13 2.10 7.97 -2.39 -0.02 2.08 16 41 H 0.08 1.42 8.11 -2.39 -0.02 1.40 16 42 H 0.09 2.40 8.01 -2.39 -0.02 2.38 16 43 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.05 2.27 6.88 -2.39 -0.02 2.26 16 45 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.03 1.42 5.74 -2.38 -0.01 1.41 16 47 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 48 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 49 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 50 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 51 H 0.07 2.60 6.09 -2.39 -0.01 2.59 16 52 H 0.06 0.49 4.81 -2.39 -0.01 0.48 16 53 H 0.06 0.33 6.51 -2.39 -0.02 0.32 16 54 H 0.07 0.39 6.43 -2.39 -0.02 0.37 16 Total: -1.00 -77.26 390.81 0.83 -76.42 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.12 Total: 17.01 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: 4.76 Total: -21.99 kcal Atomic # 7 Polarization: -91.39 SS G_CDS: -5.82 Total: -97.21 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.04 Total: -20.63 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.82 Total: 46.40 kcal Total: -77.26 0.83 -76.42 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542878553.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.726 kcal (2) G-P(sol) polarization free energy of solvation -77.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds