Wall clock time and date at job start Tue Mar 31 2020 15:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46904 * 2 1 4 4 C 1.53004 * 109.47166 * 239.99302 * 2 1 3 5 5 C 1.52997 * 109.46982 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46663 * 60.00467 * 5 4 2 7 7 C 1.52997 * 109.47494 * 299.99510 * 6 5 4 8 8 H 1.09001 * 109.47538 * 179.97438 * 7 6 5 9 9 N 1.46499 * 109.47214 * 300.00497 * 7 6 5 10 10 C 1.34777 * 119.99590 * 274.99625 * 9 7 6 11 11 O 1.21276 * 120.00670 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99793 * 179.97438 * 10 9 7 13 13 N 1.46895 * 109.47267 * 179.97438 * 12 10 9 14 14 C 1.46854 * 110.99648 * 65.74718 * 13 12 10 15 15 C 1.53037 * 109.52285 * 185.80147 * 14 13 12 16 16 C 1.53114 * 109.31211 * 300.88400 * 15 14 13 17 17 C 1.50700 * 109.52732 * 177.54197 * 16 15 14 18 18 H 1.08008 * 119.99552 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00699 * 180.02562 * 17 16 15 20 20 N 1.31524 * 119.99439 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 120.00421 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47315 * 59.99767 * 21 19 17 23 23 H 1.48501 * 109.47447 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.46956 * 299.99739 * 21 19 17 25 25 C 1.53125 * 109.16368 * 57.63311 * 16 15 14 26 26 C 1.46840 * 111.00367 * 190.00157 * 13 12 10 27 27 C 1.53001 * 109.46917 * 119.99501 * 2 1 3 28 28 H 1.09005 * 109.47340 * 60.00490 * 27 2 1 29 29 C 1.52994 * 109.47411 * 300.00256 * 27 2 1 30 30 H 1.08992 * 109.47095 * 299.99881 * 1 2 3 31 31 H 1.08994 * 109.47243 * 60.00984 * 1 2 3 32 32 H 1.09005 * 109.46715 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47306 * 300.00370 * 4 2 1 34 34 H 1.09000 * 109.46577 * 60.00262 * 4 2 1 35 35 H 1.09000 * 109.47215 * 180.02562 * 5 4 2 36 36 H 1.08999 * 109.47342 * 300.00853 * 5 4 2 37 37 H 1.09000 * 109.46858 * 179.97438 * 6 5 4 38 38 H 1.09005 * 109.47340 * 60.00110 * 6 5 4 39 39 H 0.96995 * 120.00077 * 94.99637 * 9 7 6 40 40 H 1.09006 * 109.46817 * 60.00128 * 12 10 9 41 41 H 1.08994 * 109.47234 * 300.00148 * 12 10 9 42 42 H 1.09000 * 109.42692 * 65.80880 * 14 13 12 43 43 H 1.09000 * 109.49358 * 305.83873 * 14 13 12 44 44 H 1.09002 * 109.50283 * 180.92217 * 15 14 13 45 45 H 1.09003 * 109.50113 * 60.84405 * 15 14 13 46 46 H 1.09004 * 109.52689 * 297.66875 * 16 15 14 47 47 H 0.97003 * 119.99724 * 180.02562 * 20 19 17 48 48 H 1.09005 * 109.49488 * 62.28510 * 25 16 15 49 49 H 1.08998 * 109.50244 * 182.36576 * 25 16 15 50 50 H 1.09001 * 109.46294 * 54.14190 * 26 13 12 51 51 H 1.09003 * 109.45458 * 294.17243 * 26 13 12 52 52 H 1.09005 * 109.47060 * 300.00406 * 29 27 2 53 53 H 1.09000 * 109.47245 * 60.00071 * 29 27 2 54 54 H 1.09004 * 109.47579 * 180.02562 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 3.5700 -0.7208 -1.2495 6 6 4.0804 -1.4417 -0.0001 7 6 3.5705 -0.7204 1.2491 8 1 3.9337 -1.2342 2.1391 9 7 4.0583 0.6610 1.2487 10 6 5.2803 0.9442 1.7417 11 8 5.9762 0.0555 2.1853 12 6 5.7824 2.3651 1.7409 13 7 7.1288 2.4090 2.3266 14 6 8.0931 1.6907 1.4836 15 6 9.4483 1.6328 2.1921 16 6 9.9395 3.0576 2.4628 17 6 11.2448 3.0062 3.2141 18 1 11.6814 2.0530 3.4736 19 6 11.8814 4.1759 3.5711 20 7 11.3495 5.3367 3.2555 21 14 13.4990 4.1122 4.5030 22 1 14.5095 3.3872 3.6915 23 1 13.9737 5.4945 4.7658 24 1 13.2995 3.4042 5.7931 25 6 8.8948 3.7984 3.3022 26 6 7.5559 3.7943 2.5610 27 6 2.0400 -0.7212 1.2493 28 1 1.6767 -1.7489 1.2494 29 6 1.5300 0.0001 2.4985 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5136 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6767 -1.7490 -1.2491 34 1 1.6767 -0.2076 -2.1392 35 1 3.9334 -1.2344 -2.1396 36 1 3.9330 0.3069 -1.2497 37 1 5.1704 -1.4417 -0.0005 38 1 3.7175 -2.4695 0.0001 39 1 3.5019 1.3717 0.8937 40 1 5.1098 2.9885 2.3300 41 1 5.8190 2.7369 0.7170 42 1 8.2024 2.2122 0.5327 43 1 7.7342 0.6774 1.3028 44 1 10.1681 1.1139 1.5591 45 1 9.3427 1.0987 3.1365 46 1 10.0841 3.5790 1.5166 47 1 11.7975 6.1597 3.5064 48 1 8.7799 3.2985 4.2640 49 1 9.2195 4.8265 3.4627 50 1 6.8063 4.3086 3.1625 51 1 7.6683 4.3062 1.6053 52 1 1.8933 1.0278 2.4984 53 1 0.4400 0.0001 2.4985 54 1 1.8936 -0.5134 3.3886 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542878556.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:41 Heat of formation + Delta-G solvation = -81.238295 kcal Electronic energy + Delta-G solvation = -28788.868529 eV Core-core repulsion = 25144.210279 eV Total energy + Delta-G solvation = -3644.658250 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.50791 -40.08961 -38.83308 -35.66310 -35.02220 -33.93333 -33.33208 -31.89610 -31.43118 -29.08443 -27.96526 -26.73449 -26.10629 -23.86539 -23.34792 -22.74588 -22.00971 -21.48461 -20.37434 -19.89009 -18.45410 -18.03420 -17.20778 -16.75157 -16.46406 -16.10855 -15.87034 -15.56959 -15.49320 -15.20126 -14.91372 -14.69251 -14.62662 -14.30899 -14.26576 -13.98392 -13.78081 -13.30276 -13.02038 -12.99927 -12.93106 -12.82566 -12.71486 -12.68872 -12.56921 -12.36235 -12.27211 -12.23862 -12.02786 -11.87639 -11.72021 -11.38450 -11.35384 -11.04555 -11.02540 -10.84129 -10.67415 -10.51396 -10.33088 -9.91610 -9.15105 -8.07758 -6.20559 1.40729 1.42566 1.50150 1.74992 2.16564 2.44206 3.12170 3.18766 3.65955 3.76355 3.79515 3.93031 4.11278 4.18508 4.20618 4.26341 4.32262 4.40513 4.46725 4.49054 4.51612 4.53747 4.61271 4.65808 4.66305 4.76779 4.80222 4.89326 4.91464 4.94061 4.95264 5.04539 5.11985 5.12154 5.14924 5.19131 5.22675 5.24238 5.31733 5.33432 5.40340 5.41510 5.54755 5.56505 5.60058 5.62105 5.69444 5.99316 6.01751 6.22696 6.30452 6.42317 6.69024 6.88940 7.41103 7.46307 8.96778 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.031424 B = 0.002381 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.832176 B =11759.139904 C =11979.771079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 H 0.071 0.929 4 C -0.110 4.110 5 C -0.115 4.115 6 C -0.129 4.129 7 C 0.153 3.847 8 H 0.060 0.940 9 N -0.708 5.708 10 C 0.514 3.486 11 O -0.563 6.563 12 C 0.034 3.966 13 N -0.534 5.534 14 C 0.070 3.930 15 C -0.096 4.096 16 C 0.046 3.954 17 C -0.537 4.537 18 H 0.045 0.955 19 C 0.014 3.986 20 N -0.915 5.915 21 Si 0.953 3.047 22 H -0.273 1.273 23 H -0.280 1.280 24 H -0.274 1.274 25 C -0.096 4.096 26 C 0.071 3.929 27 C -0.083 4.083 28 H 0.089 0.911 29 C -0.148 4.148 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.037 0.963 38 H 0.078 0.922 39 H 0.410 0.590 40 H 0.125 0.875 41 H 0.077 0.923 42 H 0.020 0.980 43 H 0.078 0.922 44 H 0.046 0.954 45 H 0.040 0.960 46 H -0.008 1.008 47 H 0.261 0.739 48 H 0.025 0.975 49 H 0.068 0.932 50 H 0.084 0.916 51 H 0.025 0.975 52 H 0.055 0.945 53 H 0.073 0.927 54 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.986 -8.997 -9.334 29.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.103 4.103 3 H 0.090 0.910 4 C -0.147 4.147 5 C -0.152 4.152 6 C -0.167 4.167 7 C 0.048 3.952 8 H 0.078 0.922 9 N -0.362 5.362 10 C 0.301 3.699 11 O -0.441 6.441 12 C -0.097 4.097 13 N -0.259 5.259 14 C -0.057 4.057 15 C -0.134 4.134 16 C 0.027 3.973 17 C -0.575 4.575 18 H 0.063 0.937 19 C -0.184 4.184 20 N -0.555 5.555 21 Si 0.779 3.221 22 H -0.198 1.198 23 H -0.205 1.205 24 H -0.200 1.200 25 C -0.134 4.134 26 C -0.057 4.057 27 C -0.102 4.102 28 H 0.107 0.893 29 C -0.206 4.206 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.097 0.903 39 H 0.248 0.752 40 H 0.143 0.857 41 H 0.095 0.905 42 H 0.039 0.961 43 H 0.096 0.904 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.010 0.990 47 H 0.070 0.930 48 H 0.044 0.956 49 H 0.086 0.914 50 H 0.102 0.898 51 H 0.043 0.957 52 H 0.074 0.926 53 H 0.092 0.908 54 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -26.481 -9.676 -8.546 29.460 hybrid contribution 1.294 0.726 -0.282 1.510 sum -25.187 -8.950 -8.828 28.150 Atomic orbital electron populations 1.21863 0.94064 1.02204 1.02237 1.21148 0.96359 0.99266 0.93504 0.91039 1.21586 0.94122 1.01186 0.97800 1.21464 0.96562 1.00433 0.96776 1.21876 0.99600 0.99997 0.95243 1.20923 0.94512 0.82034 0.97687 0.92165 1.45925 1.16901 1.10318 1.63076 1.20792 0.81604 0.90999 0.76500 1.90677 1.56980 1.49553 1.46908 1.22074 0.92145 0.94277 1.01176 1.61561 1.01194 1.15065 1.48122 1.22041 0.92348 0.98494 0.92844 1.21486 0.94711 0.98358 0.98826 1.18653 0.93242 0.91380 0.93993 1.21537 1.07067 0.92244 1.36610 0.93658 1.25710 1.00778 0.95200 0.96755 1.69991 1.40146 0.97519 1.47809 0.85696 0.80128 0.77153 0.79167 1.19824 1.20505 1.19953 1.21423 0.92958 1.01698 0.97331 1.22089 0.97618 0.87275 0.98681 1.21394 0.91635 1.01389 0.95798 0.89280 1.21878 1.01828 1.00463 0.96391 0.91938 0.92245 0.92455 0.91477 0.91097 0.92021 0.92464 0.94367 0.90349 0.75234 0.85666 0.90492 0.96142 0.90401 0.93541 0.94144 0.98950 0.92953 0.95579 0.91397 0.89805 0.95670 0.92566 0.90776 0.93817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 8.84 71.98 0.64 -0.39 16 2 C -0.08 -0.74 2.08 -10.79 -0.02 -0.77 16 3 H 0.07 0.60 6.50 -2.39 -0.02 0.59 16 4 C -0.11 -1.06 5.20 30.59 0.16 -0.90 16 5 C -0.11 -1.58 5.77 30.59 0.18 -1.41 16 6 C -0.13 -2.29 5.60 30.59 0.17 -2.12 16 7 C 0.15 2.72 2.23 45.01 0.10 2.82 16 8 H 0.06 1.43 7.58 -2.39 -0.02 1.41 16 9 N -0.71 -12.87 3.54 -442.46 -1.57 -14.44 16 10 C 0.51 13.96 7.47 87.66 0.65 14.61 16 11 O -0.56 -20.95 13.98 -3.02 -0.04 -20.99 16 12 C 0.03 0.88 5.45 85.56 0.47 1.35 16 13 N -0.53 -19.67 4.40 -900.93 -3.96 -23.64 16 14 C 0.07 2.83 5.11 86.32 0.44 3.27 16 15 C -0.10 -4.55 5.32 30.64 0.16 -4.38 16 16 C 0.05 2.46 2.16 -11.46 -0.02 2.43 16 17 C -0.54 -31.47 8.56 25.60 0.22 -31.25 16 18 H 0.05 2.65 7.75 -2.91 -0.02 2.63 16 19 C 0.01 0.81 5.31 84.65 0.45 1.26 16 20 N -0.92 -53.86 11.37 21.45 0.24 -53.61 16 21 Si 0.95 45.29 29.54 68.60 2.03 47.32 16 22 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 24 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 25 C -0.10 -4.76 5.12 30.65 0.16 -4.60 16 26 C 0.07 2.73 5.46 86.33 0.47 3.20 16 27 C -0.08 -0.96 2.04 -10.78 -0.02 -0.98 16 28 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 29 C -0.15 -1.73 8.68 71.98 0.63 -1.11 16 30 H 0.06 0.42 6.43 -2.39 -0.02 0.40 16 31 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.06 0.39 8.14 -2.38 -0.02 0.37 16 33 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.06 0.85 7.60 -2.39 -0.02 0.83 16 37 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.41 5.08 6.65 -92.71 -0.62 4.47 16 40 H 0.13 2.54 7.99 -2.38 -0.02 2.52 16 41 H 0.08 1.70 8.12 -2.39 -0.02 1.68 16 42 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.08 3.14 5.78 -2.39 -0.01 3.13 16 44 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 46 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 47 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 48 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 49 H 0.07 3.70 6.17 -2.39 -0.01 3.69 16 50 H 0.08 2.77 8.01 -2.39 -0.02 2.75 16 51 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 52 H 0.06 0.67 7.45 -2.38 -0.02 0.65 16 53 H 0.07 0.66 6.43 -2.39 -0.02 0.64 16 54 H 0.04 0.63 8.14 -2.38 -0.02 0.61 16 Total: -1.00 -69.96 397.45 1.76 -68.21 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.23 Total: 16.12 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: 4.82 Total: -18.97 kcal Atomic # 7 Polarization: -86.40 SS G_CDS: -5.28 Total: -91.69 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.04 Total: -20.99 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -69.96 1.76 -68.21 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542878556.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.029 kcal (2) G-P(sol) polarization free energy of solvation -69.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds