Wall clock time and date at job start Tue Mar 31 2020 15:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47161 * 2 1 4 4 C 1.52994 * 109.47306 * 240.00513 * 2 1 3 5 5 C 1.53004 * 109.47527 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.46879 * 59.99372 * 5 4 2 7 7 C 1.53000 * 109.47272 * 300.00201 * 6 5 4 8 8 H 1.09006 * 109.47068 * 299.99997 * 7 6 5 9 9 N 1.46503 * 109.46875 * 180.02562 * 7 6 5 10 10 C 1.34773 * 120.00002 * 85.00086 * 9 7 6 11 11 O 1.21280 * 120.00089 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00099 * 179.97438 * 10 9 7 13 13 N 1.46895 * 109.47559 * 180.02562 * 12 10 9 14 14 C 1.46847 * 110.99987 * 170.00240 * 13 12 10 15 15 C 1.53042 * 109.51918 * 185.84059 * 14 13 12 16 16 C 1.53118 * 109.28142 * 300.81844 * 15 14 13 17 17 C 1.50694 * 109.52352 * 177.56157 * 16 15 14 18 18 H 1.08000 * 120.00563 * 0.12801 * 17 16 15 19 19 C 1.37885 * 119.99902 * 180.12964 * 17 16 15 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 C 1.53127 * 109.20855 * 57.62326 * 16 15 14 26 26 C 1.46848 * 111.00155 * 294.21416 * 13 12 10 27 27 C 1.52993 * 109.47135 * 60.00387 * 7 6 5 28 28 H 1.09006 * 109.47461 * 59.99851 * 27 7 6 29 29 C 1.52994 * 109.47432 * 179.97438 * 27 7 6 30 30 H 1.08999 * 109.46987 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47155 * 299.99590 * 1 2 3 32 32 H 1.08998 * 109.47627 * 60.00209 * 1 2 3 33 33 H 1.08999 * 109.47793 * 59.99432 * 4 2 1 34 34 H 1.09005 * 109.47072 * 299.99622 * 4 2 1 35 35 H 1.09005 * 109.46694 * 299.99925 * 5 4 2 36 36 H 1.08994 * 109.47506 * 179.97438 * 5 4 2 37 37 H 1.09009 * 109.46783 * 180.02562 * 6 5 4 38 38 H 1.08997 * 109.47362 * 60.00738 * 6 5 4 39 39 H 0.97004 * 120.00025 * 264.99596 * 9 7 6 40 40 H 1.09004 * 109.46745 * 60.00169 * 12 10 9 41 41 H 1.09001 * 109.47168 * 300.00752 * 12 10 9 42 42 H 1.09001 * 109.46275 * 65.82923 * 14 13 12 43 43 H 1.08994 * 109.45508 * 305.84903 * 14 13 12 44 44 H 1.09005 * 109.49851 * 180.88026 * 15 14 13 45 45 H 1.09000 * 109.50711 * 60.76446 * 15 14 13 46 46 H 1.09002 * 109.52604 * 297.69190 * 16 15 14 47 47 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 48 48 H 1.08999 * 109.50035 * 62.31999 * 25 16 15 49 49 H 1.09005 * 109.49719 * 182.43426 * 25 16 15 50 50 H 1.09004 * 109.46198 * 294.17539 * 26 13 12 51 51 H 1.09007 * 109.46186 * 54.15162 * 26 13 12 52 52 H 1.09005 * 109.47333 * 59.99774 * 29 27 7 53 53 H 1.09004 * 109.47698 * 179.97438 * 29 27 7 54 54 H 1.08999 * 109.47430 * 300.00026 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 3.5700 -0.7206 -1.2496 6 6 4.0805 -1.4414 -0.0004 7 6 3.5705 -0.7202 1.2489 8 1 3.9335 0.3076 1.2487 9 7 4.0599 -1.4102 2.4450 10 6 5.2818 -1.1233 2.9359 11 8 5.9765 -0.2944 2.3872 12 6 5.7850 -1.8327 4.1667 13 7 7.1312 -1.3460 4.4964 14 6 7.5591 -1.8339 5.8137 15 6 8.8978 -1.1926 6.1864 16 6 9.9423 -1.5496 5.1253 17 6 11.2472 -0.8719 5.4550 18 1 11.3258 -0.2502 6.3346 19 6 12.3411 -1.0456 4.6337 20 7 12.2456 -1.8031 3.5628 21 14 13.9584 -0.2049 5.0421 22 1 14.9699 -0.5501 4.0109 23 1 13.7590 1.2663 5.0676 24 1 14.4324 -0.6634 6.3726 25 6 9.4509 -1.0748 3.7549 26 6 8.0955 -1.7183 3.4534 27 6 2.0406 -0.7208 1.2493 28 1 1.6776 -1.7487 1.2495 29 6 1.5305 -0.0002 2.4988 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8900 33 1 1.6766 -0.2073 -2.1393 34 1 1.6767 -1.7488 -1.2493 35 1 3.9329 0.3073 -1.2498 36 1 3.9334 -1.2347 -2.1394 37 1 5.1706 -1.4407 -0.0004 38 1 3.7177 -2.4692 -0.0001 39 1 3.5044 -2.0734 2.8838 40 1 5.8222 -2.9056 3.9779 41 1 5.1126 -1.6337 5.0012 42 1 7.6723 -2.9175 5.7805 43 1 6.8097 -1.5696 6.5597 44 1 9.2227 -1.5668 7.1573 45 1 8.7821 -0.1098 6.2333 46 1 10.0874 -2.6298 5.1059 47 1 13.0151 -1.9250 2.9849 48 1 9.3442 0.0099 3.7625 49 1 10.1710 -1.3649 2.9897 50 1 8.2061 -2.8025 3.4313 51 1 7.7357 -1.3701 2.4851 52 1 1.8935 1.0277 2.4990 53 1 0.4405 -0.0002 2.4988 54 1 1.8942 -0.5141 3.3885 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542878558.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:45 Heat of formation + Delta-G solvation = -85.768203 kcal Electronic energy + Delta-G solvation = -28539.004713 eV Core-core repulsion = 24894.150031 eV Total energy + Delta-G solvation = -3644.854682 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.34620 -40.05729 -38.91568 -35.70306 -35.41112 -33.99534 -33.31584 -31.70462 -31.41112 -29.11556 -27.90839 -26.71328 -26.11684 -23.78255 -23.48050 -22.41584 -22.02853 -21.42481 -20.47899 -20.36100 -18.44134 -17.94918 -17.38574 -16.66111 -16.44653 -16.09745 -15.68676 -15.57941 -15.46608 -15.35829 -15.02033 -14.89705 -14.60662 -14.41603 -14.09263 -13.87926 -13.70648 -13.50329 -13.09731 -12.99936 -12.86976 -12.81796 -12.73403 -12.60217 -12.54378 -12.38960 -12.38041 -12.01277 -11.97970 -11.86456 -11.77565 -11.39555 -11.34924 -11.27534 -11.02174 -10.87569 -10.80061 -10.46295 -10.32838 -9.93651 -9.15032 -8.07794 -6.21413 1.39443 1.42189 1.49315 1.74016 2.13378 2.43418 3.12025 3.18910 3.61932 3.74553 3.83312 3.96414 4.08617 4.16278 4.19100 4.29906 4.31186 4.40595 4.44376 4.46025 4.50630 4.51941 4.53717 4.62047 4.70604 4.74794 4.79091 4.86455 4.92215 4.97883 5.00898 5.02024 5.09391 5.10613 5.12000 5.18563 5.22818 5.25083 5.26367 5.33340 5.35789 5.37696 5.54580 5.56807 5.59621 5.61780 5.67556 5.98454 6.00863 6.21859 6.31508 6.40876 6.70031 6.90567 7.41696 7.45964 8.96729 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.023953 B = 0.002445 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.653331 B =11449.605588 C =12166.297938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 H 0.059 0.941 4 C -0.109 4.109 5 C -0.117 4.117 6 C -0.127 4.127 7 C 0.154 3.846 8 H 0.054 0.946 9 N -0.713 5.713 10 C 0.510 3.490 11 O -0.566 6.566 12 C 0.036 3.964 13 N -0.536 5.536 14 C 0.068 3.932 15 C -0.101 4.101 16 C 0.044 3.956 17 C -0.534 4.534 18 H 0.052 0.948 19 C 0.008 3.992 20 N -0.920 5.920 21 Si 0.955 3.045 22 H -0.284 1.284 23 H -0.274 1.274 24 H -0.267 1.267 25 C -0.090 4.090 26 C 0.073 3.927 27 C -0.081 4.081 28 H 0.092 0.908 29 C -0.148 4.148 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.068 0.932 37 H 0.032 0.968 38 H 0.077 0.923 39 H 0.414 0.586 40 H 0.078 0.922 41 H 0.134 0.866 42 H 0.031 0.969 43 H 0.099 0.901 44 H 0.061 0.939 45 H 0.045 0.955 46 H -0.008 1.008 47 H 0.259 0.741 48 H 0.018 0.982 49 H 0.056 0.944 50 H 0.013 0.987 51 H 0.064 0.936 52 H 0.039 0.961 53 H 0.075 0.925 54 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.031 -2.198 -5.516 29.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.104 4.104 3 H 0.077 0.923 4 C -0.147 4.147 5 C -0.155 4.155 6 C -0.165 4.165 7 C 0.049 3.951 8 H 0.072 0.928 9 N -0.366 5.366 10 C 0.297 3.703 11 O -0.444 6.444 12 C -0.095 4.095 13 N -0.261 5.261 14 C -0.059 4.059 15 C -0.139 4.139 16 C 0.026 3.974 17 C -0.572 4.572 18 H 0.070 0.930 19 C -0.190 4.190 20 N -0.559 5.559 21 Si 0.780 3.220 22 H -0.209 1.209 23 H -0.199 1.199 24 H -0.192 1.192 25 C -0.129 4.129 26 C -0.055 4.055 27 C -0.100 4.100 28 H 0.110 0.890 29 C -0.205 4.205 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.051 0.949 38 H 0.095 0.905 39 H 0.251 0.749 40 H 0.096 0.904 41 H 0.152 0.848 42 H 0.050 0.950 43 H 0.117 0.883 44 H 0.079 0.921 45 H 0.064 0.936 46 H 0.010 0.990 47 H 0.068 0.932 48 H 0.037 0.963 49 H 0.074 0.926 50 H 0.032 0.968 51 H 0.082 0.918 52 H 0.058 0.942 53 H 0.094 0.906 54 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -28.444 -1.162 -6.013 29.096 hybrid contribution 1.511 -0.575 -0.016 1.617 sum -26.933 -1.738 -6.029 27.654 Atomic orbital electron populations 1.21840 0.93545 1.02509 1.02192 1.21118 0.96663 0.98959 0.93619 0.92293 1.21598 0.93809 1.01448 0.97808 1.21489 0.96944 1.00090 0.96997 1.21880 0.99318 1.00375 0.94957 1.20936 0.94690 0.95654 0.83806 0.92790 1.45889 1.17070 1.43850 1.29791 1.20952 0.81509 0.82254 0.85568 1.90705 1.57042 1.35174 1.61488 1.22080 0.92115 0.98131 0.97138 1.61575 1.01140 1.60693 1.02723 1.22109 0.97316 0.96655 0.89833 1.21551 0.94195 0.99696 0.98448 1.18672 0.92739 0.94015 0.92023 1.21588 0.96628 1.29677 1.09304 0.92960 1.25805 1.02272 0.95930 0.94983 1.70029 1.31116 1.39771 1.15010 0.85662 0.79269 0.78968 0.78064 1.20938 1.19950 1.19242 1.21356 0.93717 0.97145 1.00659 1.22021 0.92892 0.95686 0.94877 1.21357 0.91325 1.01415 0.95887 0.88955 1.21885 1.01900 0.99803 0.96913 0.91805 0.91991 0.92338 0.91063 0.90786 0.93194 0.91340 0.94890 0.90474 0.74855 0.90445 0.84819 0.95047 0.88293 0.92056 0.93568 0.99006 0.93158 0.96336 0.92563 0.96845 0.91750 0.94174 0.90590 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.84 71.98 0.64 -0.58 16 2 C -0.08 -1.01 2.25 -10.80 -0.02 -1.03 16 3 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 4 C -0.11 -1.31 5.20 30.59 0.16 -1.15 16 5 C -0.12 -1.99 5.92 30.60 0.18 -1.81 16 6 C -0.13 -2.56 5.49 30.59 0.17 -2.39 16 7 C 0.15 3.01 1.90 44.99 0.09 3.09 16 8 H 0.05 1.44 7.58 -2.38 -0.02 1.43 16 9 N -0.71 -13.65 4.38 -442.53 -1.94 -15.59 16 10 C 0.51 14.61 7.47 87.66 0.65 15.27 16 11 O -0.57 -22.78 13.99 -3.03 -0.04 -22.82 16 12 C 0.04 0.92 5.45 85.56 0.47 1.39 16 13 N -0.54 -19.71 4.40 -900.92 -3.96 -23.68 16 14 C 0.07 2.32 5.46 86.33 0.47 2.79 16 15 C -0.10 -4.36 5.32 30.65 0.16 -4.20 16 16 C 0.04 2.36 2.16 -11.46 -0.02 2.33 16 17 C -0.53 -31.24 8.56 25.60 0.22 -31.02 16 18 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 19 C 0.01 0.48 5.30 84.66 0.45 0.93 16 20 N -0.92 -56.18 11.36 21.45 0.24 -55.93 16 21 Si 0.95 45.89 29.54 68.60 2.03 47.91 16 22 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 23 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 24 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 25 C -0.09 -4.85 5.12 30.65 0.16 -4.69 16 26 C 0.07 3.24 5.10 86.32 0.44 3.68 16 27 C -0.08 -1.00 1.83 -10.80 -0.02 -1.02 16 28 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 29 C -0.15 -1.77 8.68 71.98 0.63 -1.14 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.50 6.43 -2.38 -0.02 0.49 16 32 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 35 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.41 4.79 8.39 -92.71 -0.78 4.02 16 40 H 0.08 1.70 8.12 -2.38 -0.02 1.68 16 41 H 0.13 2.43 7.99 -2.39 -0.02 2.41 16 42 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.10 2.62 8.01 -2.39 -0.02 2.60 16 44 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 45 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 46 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 47 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 48 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.06 3.37 6.16 -2.38 -0.01 3.36 16 50 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 51 H 0.06 2.98 5.78 -2.38 -0.01 2.97 16 52 H 0.04 0.62 8.14 -2.38 -0.02 0.60 16 53 H 0.08 0.67 6.43 -2.39 -0.02 0.66 16 54 H 0.06 0.68 7.44 -2.39 -0.02 0.66 16 Total: -1.00 -74.30 401.87 1.20 -73.10 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.07 Total: 16.56 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: 4.81 Total: -19.56 kcal Atomic # 7 Polarization: -89.54 SS G_CDS: -5.66 Total: -95.20 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.04 Total: -22.82 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Total: -74.30 1.20 -73.10 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542878558.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.665 kcal (2) G-P(sol) polarization free energy of solvation -74.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds