Wall clock time and date at job start Tue Mar 31 2020 15:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47218 * 2 1 4 4 N 1.46498 * 109.47163 * 239.99894 * 2 1 3 5 5 C 1.34780 * 120.00139 * 84.99973 * 4 2 1 6 6 O 1.21584 * 119.99625 * 5.24053 * 5 4 2 7 7 N 1.34772 * 120.00121 * 185.24046 * 5 4 2 8 8 C 1.46924 * 120.63509 * 174.93601 * 7 5 4 9 9 C 1.53194 * 108.77538 * 233.63028 * 8 7 5 10 10 C 1.53038 * 109.31052 * 305.35964 * 9 8 7 11 11 C 1.50701 * 109.45711 * 181.38511 * 10 9 8 12 12 H 1.07997 * 120.00316 * 354.52520 * 11 10 9 13 13 C 1.37880 * 119.99724 * 174.52164 * 11 10 9 14 14 N 1.31511 * 119.99619 * 159.37273 * 13 11 10 15 15 Si 1.86798 * 120.00191 * 339.37949 * 13 11 10 16 16 H 1.48501 * 109.47069 * 179.97438 * 15 13 11 17 17 H 1.48489 * 109.47335 * 59.99838 * 15 13 11 18 18 H 1.48501 * 109.46766 * 299.99634 * 15 13 11 19 19 C 1.53036 * 109.52726 * 61.37429 * 10 9 8 20 20 C 1.46929 * 120.62854 * 354.95330 * 7 5 4 21 21 C 1.52997 * 109.46947 * 119.99866 * 2 1 3 22 22 H 1.08996 * 109.47762 * 59.99927 * 21 2 1 23 23 C 1.53006 * 109.47009 * 180.02562 * 21 2 1 24 24 C 1.52997 * 109.47009 * 180.02562 * 23 21 2 25 25 C 1.52998 * 109.47142 * 299.99947 * 24 23 21 26 26 C 1.52999 * 109.47439 * 59.99770 * 25 24 23 27 27 H 1.08997 * 109.47333 * 179.97438 * 26 25 24 28 28 C 1.53006 * 109.46563 * 60.00202 * 26 25 24 29 29 C 1.52997 * 109.47142 * 300.00230 * 26 25 24 30 30 H 1.08999 * 109.47218 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47189 * 300.00299 * 1 2 3 32 32 H 1.09008 * 109.47309 * 60.00084 * 1 2 3 33 33 H 0.97002 * 120.00012 * 265.00171 * 4 2 1 34 34 H 1.08997 * 109.59207 * 113.83784 * 8 7 5 35 35 H 1.09004 * 109.69912 * 353.48567 * 8 7 5 36 36 H 1.09000 * 109.49691 * 185.40811 * 9 8 7 37 37 H 1.08998 * 109.52114 * 65.33063 * 9 8 7 38 38 H 1.08998 * 109.46069 * 301.35700 * 10 9 8 39 39 H 0.97001 * 120.00751 * 353.77544 * 14 13 11 40 40 H 1.09002 * 109.50213 * 58.57624 * 19 10 9 41 41 H 1.09006 * 109.49828 * 178.67347 * 19 10 9 42 42 H 1.08998 * 109.58717 * 246.15596 * 20 7 5 43 43 H 1.09002 * 109.58665 * 6.44073 * 20 7 5 44 44 H 1.09002 * 109.47046 * 299.99786 * 23 21 2 45 45 H 1.08999 * 109.47299 * 60.00047 * 23 21 2 46 46 H 1.08998 * 109.47152 * 179.97438 * 24 23 21 47 47 H 1.09001 * 109.47408 * 59.99492 * 24 23 21 48 48 H 1.09008 * 109.47226 * 300.00181 * 25 24 23 49 49 H 1.09002 * 109.47303 * 180.02562 * 25 24 23 50 50 H 1.08997 * 109.46877 * 299.99766 * 28 26 25 51 51 H 1.08998 * 109.47231 * 60.00351 * 28 26 25 52 52 H 1.09001 * 109.46898 * 179.97438 * 28 26 25 53 53 H 1.08994 * 109.47406 * 299.99341 * 29 26 25 54 54 H 1.09001 * 109.46713 * 179.97438 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1470 -0.0183 -2.3572 6 8 1.9496 1.1810 -2.3902 7 7 2.4946 -0.6753 -3.4814 8 6 2.5313 0.0211 -4.7746 9 6 1.6695 -0.7537 -5.7765 10 6 2.1424 -2.2081 -5.8323 11 6 1.3189 -2.9653 -6.8421 12 1 0.4805 -2.4850 -7.3244 13 6 1.6360 -4.2713 -7.1501 14 7 0.7311 -5.0576 -7.6909 15 14 3.3508 -4.9238 -6.7992 16 1 3.4347 -6.3459 -7.2188 17 1 3.6320 -4.8199 -5.3449 18 1 4.3487 -4.1246 -7.5547 19 6 1.9781 -2.8527 -4.4541 20 6 2.8436 -2.1019 -3.4372 21 6 2.0399 -0.7212 1.2492 22 1 1.6766 -1.7488 1.2494 23 6 3.5700 -0.7207 1.2496 24 6 4.0799 -1.4424 2.4985 25 6 3.5694 -0.7221 3.7480 26 6 2.0394 -0.7225 3.7477 27 1 1.6757 -0.2097 4.6381 28 6 1.5299 -2.1653 3.7468 29 6 1.5295 -0.0007 2.4988 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 2.2490 -1.6318 -1.1526 34 1 3.5587 0.0677 -5.1355 35 1 2.1384 1.0313 -4.6591 36 1 1.7647 -0.3020 -6.7639 37 1 0.6267 -0.7220 -5.4610 38 1 3.1921 -2.2377 -6.1243 39 1 -0.1830 -4.7487 -7.7902 40 1 0.9324 -2.8010 -4.1505 41 1 2.2929 -3.8953 -4.5001 42 1 3.8964 -2.2285 -3.6891 43 1 2.6577 -2.4927 -2.4367 44 1 3.9337 -1.2343 0.3596 45 1 3.9330 0.3071 1.2498 46 1 5.1699 -1.4425 2.4985 47 1 3.7169 -2.4702 2.4979 48 1 3.9324 0.3058 3.7487 49 1 3.9331 -1.2360 4.6378 50 1 1.8936 -2.6784 2.8566 51 1 1.8932 -2.6794 4.6366 52 1 0.4399 -2.1656 3.7471 53 1 1.8924 1.0270 2.4994 54 1 0.4394 -0.0015 2.4984 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564296258.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:30 Heat of formation + Delta-G solvation = -80.952276 kcal Electronic energy + Delta-G solvation = -29104.279397 eV Core-core repulsion = 25459.633550 eV Total energy + Delta-G solvation = -3644.645848 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.61103 -40.30545 -38.66223 -36.55061 -35.39941 -33.69505 -32.63124 -32.53017 -31.65478 -29.67219 -27.94877 -27.50653 -25.13779 -24.08976 -23.97335 -22.91087 -21.93284 -21.42037 -20.48048 -19.67300 -19.43086 -18.98297 -17.41286 -16.69241 -16.42912 -16.05756 -15.78386 -15.40541 -15.30729 -15.19495 -14.90599 -14.82874 -14.64333 -14.56133 -14.34279 -14.04912 -13.82483 -13.66551 -13.50661 -13.29128 -13.19737 -12.63888 -12.54870 -12.48794 -12.33817 -12.28745 -12.09995 -12.07248 -11.85310 -11.81011 -11.71064 -11.50936 -11.28603 -11.13085 -11.06491 -10.88126 -10.81072 -10.76851 -10.41768 -10.13732 -9.43457 -8.68358 -6.32153 1.49358 1.58406 1.68478 1.78083 2.17570 2.55629 2.91626 3.06462 3.59589 3.79962 3.82381 4.01065 4.07876 4.15941 4.22578 4.25536 4.29826 4.32358 4.44788 4.47022 4.50876 4.53567 4.54393 4.59291 4.67559 4.69739 4.79356 4.81713 4.82629 4.88118 4.95502 4.97140 5.03493 5.07710 5.11584 5.15712 5.17044 5.20594 5.23057 5.32987 5.36889 5.40623 5.43224 5.49861 5.53316 5.58691 5.66865 5.71042 5.77006 6.03483 6.04919 6.15814 6.59506 6.99135 7.44583 7.58174 8.64904 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.017324 B = 0.003017 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.839654 B = 9277.855307 C = 9898.478807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.164 3.836 3 H 0.066 0.934 4 N -0.730 5.730 5 C 0.705 3.295 6 O -0.636 6.636 7 N -0.624 5.624 8 C 0.137 3.863 9 C -0.107 4.107 10 C 0.021 3.979 11 C -0.606 4.606 12 H 0.008 0.992 13 C -0.019 4.019 14 N -0.940 5.940 15 Si 1.081 2.919 16 H -0.296 1.296 17 H -0.229 1.229 18 H -0.267 1.267 19 C -0.127 4.127 20 C 0.115 3.885 21 C -0.083 4.083 22 H 0.086 0.914 23 C -0.111 4.111 24 C -0.118 4.118 25 C -0.114 4.114 26 C -0.088 4.088 27 H 0.074 0.926 28 C -0.152 4.152 29 C -0.107 4.107 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.028 0.972 33 H 0.404 0.596 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.030 0.970 38 H 0.034 0.966 39 H 0.250 0.750 40 H 0.036 0.964 41 H 0.067 0.933 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.061 0.939 47 H 0.070 0.930 48 H 0.057 0.943 49 H 0.066 0.934 50 H 0.059 0.941 51 H 0.056 0.944 52 H 0.054 0.946 53 H 0.060 0.940 54 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.456 6.473 26.585 28.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.060 3.940 3 H 0.084 0.916 4 N -0.388 5.388 5 C 0.406 3.594 6 O -0.519 6.519 7 N -0.361 5.361 8 C 0.013 3.987 9 C -0.146 4.146 10 C 0.002 3.998 11 C -0.644 4.644 12 H 0.026 0.974 13 C -0.217 4.217 14 N -0.576 5.576 15 Si 0.901 3.099 16 H -0.222 1.222 17 H -0.152 1.152 18 H -0.192 1.192 19 C -0.166 4.166 20 C -0.008 4.008 21 C -0.102 4.102 22 H 0.105 0.895 23 C -0.149 4.149 24 C -0.155 4.155 25 C -0.152 4.152 26 C -0.106 4.106 27 H 0.093 0.907 28 C -0.209 4.209 29 C -0.144 4.144 30 H 0.081 0.919 31 H 0.104 0.896 32 H 0.047 0.953 33 H 0.243 0.757 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.114 0.886 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.088 0.912 48 H 0.076 0.924 49 H 0.085 0.915 50 H 0.078 0.922 51 H 0.075 0.925 52 H 0.073 0.927 53 H 0.079 0.921 54 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.255 6.026 26.379 28.290 hybrid contribution -1.865 0.951 -0.866 2.265 sum 6.390 6.977 25.513 27.211 Atomic orbital electron populations 1.22223 0.95559 1.02329 1.01809 1.20888 0.93580 0.96486 0.83077 0.91618 1.45311 1.71134 1.14012 1.08308 1.15995 0.77572 0.84666 0.81147 1.90831 1.60731 1.14521 1.85775 1.47343 1.71272 1.11019 1.06418 1.21445 1.00344 0.95569 0.81294 1.21734 0.97958 0.96859 0.98012 1.18921 0.96093 0.92226 0.92601 1.22224 1.15679 0.99629 1.26864 0.97372 1.27322 1.07419 0.93834 0.93077 1.70966 1.03200 1.38226 1.45162 0.83655 0.71261 0.75202 0.79776 1.22241 1.15245 1.19228 1.22220 0.98628 0.99609 0.96129 1.21843 0.99772 0.79027 1.00123 1.21394 0.95867 1.00349 0.92575 0.89536 1.21529 0.94518 1.00554 0.98260 1.21547 1.00202 0.99746 0.94026 1.21570 0.95209 1.00537 0.97857 1.21066 0.95390 0.96586 0.97562 0.90732 1.21949 1.00917 0.95943 1.02056 1.21624 1.00941 0.98906 0.92977 0.91860 0.89571 0.95267 0.75705 0.90255 0.90574 0.92046 0.95141 0.94808 0.94140 0.94508 0.91446 0.89707 0.88596 0.92377 0.93035 0.91996 0.91187 0.92401 0.91484 0.92167 0.92513 0.92715 0.92116 0.90851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 9.13 71.98 0.66 -2.72 16 2 C 0.16 3.46 2.20 44.99 0.10 3.56 16 3 H 0.07 1.69 7.51 -2.39 -0.02 1.68 16 4 N -0.73 -17.65 4.30 -457.83 -1.97 -19.62 16 5 C 0.70 22.99 8.26 179.06 1.48 24.47 16 6 O -0.64 -25.38 15.41 -3.98 -0.06 -25.44 16 7 N -0.62 -20.03 2.97 -836.90 -2.49 -22.52 16 8 C 0.14 4.66 6.41 86.36 0.55 5.21 16 9 C -0.11 -4.33 5.30 30.67 0.16 -4.16 16 10 C 0.02 0.91 1.65 -11.51 -0.02 0.89 16 11 C -0.61 -33.94 8.80 25.60 0.23 -33.71 16 12 H 0.01 0.50 7.99 -2.91 -0.02 0.48 16 13 C -0.02 -1.07 5.28 84.66 0.45 -0.62 16 14 N -0.94 -58.54 13.69 21.45 0.29 -58.25 16 15 Si 1.08 46.92 26.42 68.60 1.81 48.74 16 16 H -0.30 -13.27 7.11 99.48 0.71 -12.57 16 17 H -0.23 -8.18 5.81 99.48 0.58 -7.60 16 18 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 19 C -0.13 -4.84 5.06 30.67 0.16 -4.68 16 20 C 0.11 3.25 6.43 86.36 0.56 3.81 16 21 C -0.08 -1.21 1.55 -10.79 -0.02 -1.23 16 22 H 0.09 1.16 6.43 -2.39 -0.02 1.15 16 23 C -0.11 -1.66 5.05 30.60 0.15 -1.50 16 24 C -0.12 -1.42 5.65 30.59 0.17 -1.24 16 25 C -0.11 -1.26 5.45 30.59 0.17 -1.09 16 26 C -0.09 -0.94 3.20 -10.79 -0.03 -0.97 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 C -0.15 -1.56 8.50 71.98 0.61 -0.95 16 29 C -0.11 -1.34 4.38 30.59 0.13 -1.21 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 31 H 0.09 1.42 6.43 -2.39 -0.02 1.40 16 32 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.40 7.98 5.85 -92.71 -0.54 7.44 16 34 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.08 2.70 7.04 -2.38 -0.02 2.69 16 36 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.03 1.43 6.76 -2.39 -0.02 1.41 16 39 H 0.25 15.95 8.73 -92.71 -0.81 15.14 16 40 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.07 2.59 5.10 -2.38 -0.01 2.58 16 42 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.10 2.07 5.56 -2.39 -0.01 2.06 16 44 H 0.06 0.93 7.45 -2.39 -0.02 0.91 16 45 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.07 0.79 6.43 -2.39 -0.02 0.78 16 48 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 49 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.06 0.65 4.81 -2.39 -0.01 0.64 16 51 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 52 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 53 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 54 H 0.07 0.86 6.43 -2.39 -0.02 0.85 16 Total: -1.00 -70.44 389.77 3.25 -67.19 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: 0.16 Total: 26.06 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: 5.50 Total: -16.16 kcal Atomic # 7 Polarization: -96.22 SS G_CDS: -4.16 Total: -100.38 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.06 Total: -25.44 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 1.81 Total: 48.74 kcal Total: -70.44 3.25 -67.19 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564296258.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.766 kcal (2) G-P(sol) polarization free energy of solvation -70.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds