Wall clock time and date at job start Tue Mar 31 2020 15:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47123 * 2 1 4 4 N 1.46509 * 109.47283 * 240.00399 * 2 1 3 5 5 C 1.34777 * 119.99837 * 84.99446 * 4 2 1 6 6 O 1.21583 * 119.99968 * 355.02289 * 5 4 2 7 7 N 1.34778 * 119.99768 * 175.01955 * 5 4 2 8 8 C 1.46930 * 120.63104 * 4.93799 * 7 5 4 9 9 C 1.53618 * 108.54442 * 126.36854 * 8 7 5 10 10 C 1.53044 * 109.23815 * 54.85788 * 9 8 7 11 11 C 1.50700 * 109.46008 * 178.49288 * 10 9 8 12 12 H 1.07992 * 120.00367 * 120.06707 * 11 10 9 13 13 C 1.37884 * 119.99945 * 300.06886 * 11 10 9 14 14 N 1.31511 * 120.00194 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 119.99590 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47031 * 90.00209 * 15 13 11 17 17 H 1.48506 * 109.46906 * 210.00020 * 15 13 11 18 18 H 1.48493 * 109.47452 * 329.99845 * 15 13 11 19 19 C 1.53044 * 109.54017 * 298.50923 * 10 9 8 20 20 C 1.46920 * 120.63217 * 185.22541 * 7 5 4 21 21 C 1.52997 * 109.47269 * 120.00428 * 2 1 3 22 22 H 1.09006 * 109.47276 * 180.02562 * 21 2 1 23 23 C 1.52992 * 109.47567 * 60.00076 * 21 2 1 24 24 C 1.52997 * 109.47567 * 180.02562 * 23 21 2 25 25 C 1.53002 * 109.47014 * 59.99819 * 24 23 21 26 26 C 1.53005 * 109.47279 * 300.00251 * 25 24 23 27 27 H 1.09000 * 109.46677 * 299.99936 * 26 25 24 28 28 C 1.52994 * 109.46909 * 179.97438 * 26 25 24 29 29 C 1.53000 * 109.46784 * 59.99870 * 26 25 24 30 30 H 1.09005 * 109.47483 * 60.00358 * 1 2 3 31 31 H 1.09007 * 109.46818 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47562 * 299.99775 * 1 2 3 33 33 H 0.96995 * 119.99482 * 265.27583 * 4 2 1 34 34 H 1.09003 * 109.58809 * 246.20919 * 8 7 5 35 35 H 1.09002 * 109.58325 * 6.62759 * 8 7 5 36 36 H 1.09000 * 109.63527 * 294.86951 * 9 8 7 37 37 H 1.08999 * 109.46141 * 174.73693 * 9 8 7 38 38 H 1.08997 * 109.45942 * 58.53481 * 10 9 8 39 39 H 0.96998 * 120.00111 * 179.97438 * 14 13 11 40 40 H 1.08999 * 109.49612 * 301.41588 * 19 10 9 41 41 H 1.09000 * 109.52613 * 181.32988 * 19 10 9 42 42 H 1.09002 * 109.58589 * 353.36403 * 20 7 5 43 43 H 1.08998 * 109.59048 * 113.79133 * 20 7 5 44 44 H 1.09006 * 109.47152 * 300.00480 * 23 21 2 45 45 H 1.08998 * 109.47203 * 59.99960 * 23 21 2 46 46 H 1.08997 * 109.47224 * 300.00226 * 24 23 21 47 47 H 1.09000 * 109.47397 * 179.97438 * 24 23 21 48 48 H 1.09002 * 109.47121 * 179.97438 * 25 24 23 49 49 H 1.09009 * 109.47041 * 59.99899 * 25 24 23 50 50 H 1.09000 * 109.47574 * 299.99602 * 28 26 25 51 51 H 1.08992 * 109.47519 * 60.00265 * 28 26 25 52 52 H 1.09007 * 109.46893 * 180.02562 * 28 26 25 53 53 H 1.09000 * 109.46880 * 180.02562 * 29 26 25 54 54 H 1.08997 * 109.47437 * 60.00016 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1470 -0.0181 -2.3572 6 8 1.7732 1.1362 -2.4358 7 7 2.6900 -0.6253 -3.4310 8 6 3.0471 -2.0497 -3.3846 9 6 2.3738 -2.7610 -4.5682 10 6 2.7664 -2.0570 -5.8691 11 6 2.1383 -2.7731 -7.0369 12 1 1.4569 -2.2477 -7.6895 13 6 2.4335 -4.0993 -7.2720 14 7 1.8850 -4.7245 -8.2907 15 14 3.6126 -5.0080 -6.1434 16 1 2.8515 -5.6319 -5.0313 17 1 4.3197 -6.0633 -6.9126 18 1 4.6038 -4.0512 -5.5893 19 6 2.2749 -0.6080 -5.8355 20 6 2.9419 0.1262 -4.6681 21 6 2.0400 -0.7213 1.2492 22 1 3.1300 -0.7209 1.2494 23 6 1.5301 -2.1638 1.2491 24 6 2.0396 -2.8849 2.4986 25 6 1.5291 -2.1635 3.7476 26 6 2.0390 -0.7210 3.7477 27 1 3.1290 -0.7210 3.7481 28 6 1.5280 0.0005 4.9963 29 6 1.5295 0.0001 2.4981 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.2452 -1.6326 -1.1537 34 1 4.1293 -2.1578 -3.4574 35 1 2.6967 -2.4840 -2.4483 36 1 1.2910 -2.7265 -4.4483 37 1 2.7032 -3.7994 -4.6028 38 1 3.8510 -2.0702 -5.9761 39 1 2.0929 -5.6573 -8.4563 40 1 1.1930 -0.5938 -5.7037 41 1 2.5339 -0.1136 -6.7718 42 1 2.5220 1.1282 -4.5789 43 1 4.0157 0.1921 -4.8434 44 1 0.4400 -2.1639 1.2491 45 1 1.8934 -2.6776 0.3592 46 1 3.1296 -2.8849 2.4991 47 1 1.6759 -3.9125 2.4988 48 1 1.8917 -2.6776 4.6378 49 1 0.4390 -2.1635 3.7471 50 1 0.4380 0.0005 4.9954 51 1 1.8906 -0.5130 5.8867 52 1 1.8909 1.0283 4.9961 53 1 1.8931 1.0276 2.4979 54 1 0.4395 0.0000 2.4977 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564296260.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:37 Heat of formation + Delta-G solvation = -75.108422 kcal Electronic energy + Delta-G solvation = -28960.983049 eV Core-core repulsion = 25316.590610 eV Total energy + Delta-G solvation = -3644.392439 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.62128 -40.19678 -38.65940 -36.53686 -35.33874 -33.77246 -33.07089 -32.54253 -31.68547 -29.52554 -28.15034 -27.23553 -25.41184 -24.26059 -24.16414 -22.89914 -21.90946 -21.01258 -20.48731 -20.15485 -19.10668 -18.73558 -17.33412 -16.75177 -16.45897 -16.17568 -15.82965 -15.63289 -15.43200 -15.23703 -15.04373 -14.95933 -14.69154 -14.44639 -14.20355 -14.12940 -13.77002 -13.65726 -13.47524 -13.37761 -13.13354 -12.81926 -12.72428 -12.59229 -12.38108 -12.28444 -12.09979 -12.03412 -11.85857 -11.79827 -11.56976 -11.48823 -11.27934 -11.22993 -11.04351 -11.01330 -10.93657 -10.78684 -10.64378 -10.15822 -9.41711 -8.27108 -6.32278 1.32123 1.40133 1.50709 1.69560 2.15466 2.35775 2.90603 3.07641 3.63172 3.75381 3.83322 3.97442 4.04177 4.10324 4.19468 4.23592 4.28003 4.30683 4.39500 4.45688 4.48519 4.54303 4.58223 4.62922 4.65460 4.72714 4.75209 4.81408 4.82170 4.87385 4.95461 4.97091 4.99210 5.04793 5.05073 5.13514 5.14796 5.22007 5.24056 5.35533 5.39083 5.39848 5.43359 5.48893 5.50381 5.57566 5.65771 5.68212 5.69886 5.75188 6.03225 6.32937 6.74810 6.97940 7.33051 7.57985 8.90078 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.018378 B = 0.002997 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.155537 B = 9340.080120 C =10375.752748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.166 3.834 3 H 0.067 0.933 4 N -0.733 5.733 5 C 0.703 3.297 6 O -0.633 6.633 7 N -0.624 5.624 8 C 0.115 3.885 9 C -0.131 4.131 10 C 0.015 3.985 11 C -0.521 4.521 12 H 0.025 0.975 13 C 0.004 3.996 14 N -0.955 5.955 15 Si 0.954 3.046 16 H -0.260 1.260 17 H -0.304 1.304 18 H -0.233 1.233 19 C -0.107 4.107 20 C 0.135 3.865 21 C -0.082 4.082 22 H 0.076 0.924 23 C -0.119 4.119 24 C -0.117 4.117 25 C -0.113 4.113 26 C -0.089 4.089 27 H 0.067 0.933 28 C -0.147 4.147 29 C -0.106 4.106 30 H 0.030 0.970 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.403 0.597 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.049 0.951 37 H 0.054 0.946 38 H 0.035 0.965 39 H 0.264 0.736 40 H 0.037 0.963 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.058 0.942 46 H 0.062 0.938 47 H 0.065 0.935 48 H 0.065 0.935 49 H 0.061 0.939 50 H 0.055 0.945 51 H 0.058 0.942 52 H 0.054 0.946 53 H 0.063 0.937 54 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.002 5.270 29.241 29.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.061 3.939 3 H 0.085 0.915 4 N -0.391 5.391 5 C 0.405 3.595 6 O -0.515 6.515 7 N -0.361 5.361 8 C -0.007 4.007 9 C -0.169 4.169 10 C -0.004 4.004 11 C -0.559 4.559 12 H 0.043 0.957 13 C -0.192 4.192 14 N -0.595 5.595 15 Si 0.780 3.220 16 H -0.185 1.185 17 H -0.232 1.232 18 H -0.157 1.157 19 C -0.145 4.145 20 C 0.012 3.988 21 C -0.101 4.101 22 H 0.094 0.906 23 C -0.156 4.156 24 C -0.155 4.155 25 C -0.150 4.150 26 C -0.107 4.107 27 H 0.086 0.914 28 C -0.204 4.204 29 C -0.143 4.143 30 H 0.049 0.951 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.243 0.757 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.084 0.916 49 H 0.080 0.920 50 H 0.074 0.926 51 H 0.077 0.923 52 H 0.073 0.927 53 H 0.082 0.918 54 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.737 5.963 29.112 29.842 hybrid contribution 0.015 -1.088 -0.745 1.319 sum 2.752 4.875 28.367 28.914 Atomic orbital electron populations 1.22252 0.95535 1.02410 1.01786 1.20853 0.94014 0.96116 0.82916 0.91505 1.45423 1.71351 1.14013 1.08313 1.16017 0.78137 0.84295 0.81043 1.90838 1.57626 1.18590 1.84467 1.47341 1.65138 1.10940 1.12643 1.21879 1.00564 0.79496 0.98802 1.22286 1.00236 0.98521 0.95878 1.19080 0.96393 0.92873 0.92032 1.21389 1.26807 0.96183 1.11535 0.95711 1.26047 0.97755 0.98578 0.96869 1.70080 1.46209 1.11685 1.31566 0.85772 0.79722 0.78206 0.78348 1.18542 1.23239 1.15664 1.21718 0.99043 0.96319 0.97440 1.21490 1.00363 0.95102 0.81811 1.21332 1.00630 0.95367 0.92747 0.90607 1.21671 1.01380 0.94352 0.98201 1.21507 1.00827 0.98970 0.94150 1.21594 1.00765 0.94953 0.97693 1.21095 1.00235 0.94958 0.94417 0.91437 1.21817 1.01263 1.00232 0.97096 1.21651 1.01356 0.98731 0.92612 0.95078 0.91587 0.89826 0.75703 0.89776 0.88611 0.93171 0.92818 0.94726 0.92674 0.94427 0.91592 0.90170 0.90184 0.91256 0.92317 0.91916 0.91626 0.91642 0.92003 0.92610 0.92338 0.92675 0.91830 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 8.78 71.98 0.63 -2.67 16 2 C 0.17 3.40 2.37 44.99 0.11 3.50 16 3 H 0.07 1.64 7.65 -2.39 -0.02 1.62 16 4 N -0.73 -17.50 4.91 -457.81 -2.25 -19.74 16 5 C 0.70 22.72 8.26 179.05 1.48 24.20 16 6 O -0.63 -24.98 15.43 -3.98 -0.06 -25.04 16 7 N -0.62 -19.83 2.97 -836.06 -2.48 -22.31 16 8 C 0.12 3.28 6.42 86.51 0.56 3.83 16 9 C -0.13 -4.98 4.86 30.82 0.15 -4.83 16 10 C 0.02 0.67 1.65 -11.51 -0.02 0.65 16 11 C -0.52 -29.38 9.14 25.60 0.23 -29.14 16 12 H 0.02 1.57 7.99 -2.91 -0.02 1.55 16 13 C 0.00 0.21 5.45 84.66 0.46 0.67 16 14 N -0.95 -59.63 13.96 21.45 0.30 -59.33 16 15 Si 0.95 42.34 24.38 68.60 1.67 44.01 16 16 H -0.26 -10.67 6.85 99.48 0.68 -9.99 16 17 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 18 H -0.23 -9.12 6.53 99.48 0.65 -8.47 16 19 C -0.11 -4.23 5.30 30.67 0.16 -4.07 16 20 C 0.14 4.51 6.44 86.37 0.56 5.07 16 21 C -0.08 -1.16 2.18 -10.80 -0.02 -1.19 16 22 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 23 C -0.12 -1.54 4.68 30.59 0.14 -1.40 16 24 C -0.12 -1.31 5.92 30.59 0.18 -1.13 16 25 C -0.11 -1.16 5.20 30.60 0.16 -1.00 16 26 C -0.09 -0.94 2.72 -10.79 -0.03 -0.96 16 27 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 28 C -0.15 -1.39 9.19 71.98 0.66 -0.73 16 29 C -0.11 -1.29 4.13 30.59 0.13 -1.16 16 30 H 0.03 0.83 8.10 -2.38 -0.02 0.81 16 31 H 0.07 1.23 6.43 -2.38 -0.02 1.22 16 32 H 0.08 1.35 6.43 -2.39 -0.02 1.34 16 33 H 0.40 7.93 4.35 -92.71 -0.40 7.52 16 34 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.10 2.09 5.64 -2.39 -0.01 2.07 16 36 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.05 2.08 3.24 -2.39 -0.01 2.07 16 38 H 0.03 1.49 7.20 -2.39 -0.02 1.48 16 39 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 40 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 42 H 0.08 2.77 7.00 -2.39 -0.02 2.75 16 43 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.07 0.93 6.43 -2.38 -0.02 0.92 16 45 H 0.06 0.78 6.50 -2.39 -0.02 0.76 16 46 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 50 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 51 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 52 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 53 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 54 H 0.07 0.86 6.43 -2.39 -0.02 0.84 16 Total: -1.00 -70.44 388.65 3.10 -67.35 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: 0.38 Total: 25.41 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: 5.54 Total: -10.34 kcal Atomic # 7 Polarization: -96.95 SS G_CDS: -4.43 Total: -101.38 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.06 Total: -25.04 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 1.67 Total: 44.01 kcal Total: -70.44 3.10 -67.35 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564296260.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.763 kcal (2) G-P(sol) polarization free energy of solvation -70.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds