Wall clock time and date at job start Tue Mar 31 2020 15:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46999 * 2 1 4 4 N 1.46500 * 109.47160 * 240.00378 * 2 1 3 5 5 C 1.34775 * 119.99983 * 84.99759 * 4 2 1 6 6 O 1.21587 * 119.99926 * 5.12141 * 5 4 2 7 7 N 1.34783 * 119.99872 * 185.11782 * 5 4 2 8 8 C 1.46922 * 120.62959 * 174.94644 * 7 5 4 9 9 C 1.53194 * 108.77312 * 233.63010 * 8 7 5 10 10 C 1.53040 * 109.31354 * 305.36480 * 9 8 7 11 11 C 1.50704 * 109.45792 * 181.38768 * 10 9 8 12 12 H 1.08005 * 119.99932 * 335.03468 * 11 10 9 13 13 C 1.37872 * 119.99655 * 155.04300 * 11 10 9 14 14 N 1.31505 * 120.00612 * 355.04575 * 13 11 10 15 15 Si 1.86806 * 119.99512 * 175.05127 * 13 11 10 16 16 H 1.48497 * 109.47207 * 59.99763 * 15 13 11 17 17 H 1.48492 * 109.47176 * 299.99462 * 15 13 11 18 18 H 1.48504 * 109.46617 * 179.97438 * 15 13 11 19 19 C 1.53041 * 109.52613 * 61.37522 * 10 9 8 20 20 C 1.46925 * 120.63087 * 354.96801 * 7 5 4 21 21 C 1.52998 * 109.47187 * 120.00294 * 2 1 3 22 22 H 1.09004 * 109.47391 * 59.99947 * 21 2 1 23 23 C 1.52995 * 109.47155 * 180.02562 * 21 2 1 24 24 C 1.52998 * 109.47155 * 180.02562 * 23 21 2 25 25 C 1.53006 * 109.47256 * 299.99864 * 24 23 21 26 26 C 1.53005 * 109.46956 * 59.99940 * 25 24 23 27 27 H 1.09000 * 109.47029 * 59.99875 * 26 25 24 28 28 C 1.52993 * 109.47163 * 180.02562 * 26 25 24 29 29 C 1.53000 * 109.46977 * 299.99818 * 21 2 1 30 30 H 1.08992 * 109.46841 * 299.99822 * 1 2 3 31 31 H 1.08997 * 109.47038 * 59.99536 * 1 2 3 32 32 H 1.09000 * 109.47029 * 179.97438 * 1 2 3 33 33 H 0.97004 * 119.99779 * 264.99989 * 4 2 1 34 34 H 1.08995 * 109.58773 * 113.84381 * 8 7 5 35 35 H 1.09000 * 109.58977 * 353.41554 * 8 7 5 36 36 H 1.09007 * 109.49407 * 185.41420 * 9 8 7 37 37 H 1.08997 * 109.52176 * 65.34013 * 9 8 7 38 38 H 1.08993 * 109.45943 * 301.35895 * 10 9 8 39 39 H 0.97008 * 119.99921 * 5.06358 * 14 13 11 40 40 H 1.08998 * 109.49593 * 58.57849 * 19 10 9 41 41 H 1.08994 * 109.49391 * 178.67882 * 19 10 9 42 42 H 1.09000 * 109.58854 * 246.15657 * 20 7 5 43 43 H 1.09007 * 109.58834 * 6.43959 * 20 7 5 44 44 H 1.08996 * 109.47288 * 299.99766 * 23 21 2 45 45 H 1.09000 * 109.47090 * 60.00209 * 23 21 2 46 46 H 1.09004 * 109.47391 * 59.99891 * 24 23 21 47 47 H 1.08998 * 109.47552 * 180.02562 * 24 23 21 48 48 H 1.08997 * 109.47191 * 179.97438 * 25 24 23 49 49 H 1.08994 * 109.46737 * 300.00322 * 25 24 23 50 50 H 1.09000 * 109.47300 * 59.99980 * 28 26 25 51 51 H 1.08999 * 109.47206 * 180.02562 * 28 26 25 52 52 H 1.08996 * 109.47432 * 300.00237 * 28 26 25 53 53 H 1.08991 * 109.47369 * 299.99999 * 29 21 2 54 54 H 1.09008 * 109.47097 * 60.00155 * 29 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1471 -0.0181 -2.3571 6 8 1.9475 1.1808 -2.3906 7 7 2.4970 -0.6747 -3.4810 8 6 2.5340 0.0218 -4.7741 9 6 1.6747 -0.7546 -5.7770 10 6 2.1500 -2.2082 -5.8322 11 6 1.3290 -2.9669 -6.8429 12 1 0.3331 -2.6307 -7.0914 13 6 1.8491 -4.0901 -7.4501 14 7 3.0949 -4.4440 -7.2216 15 14 0.7841 -5.1092 -8.5977 16 1 0.3308 -4.2652 -9.7323 17 1 -0.3975 -5.6173 -7.8556 18 1 1.5729 -6.2549 -9.1177 19 6 1.9852 -2.8530 -4.4540 20 6 2.8483 -2.1006 -3.4363 21 6 2.0401 -0.7213 1.2492 22 1 1.6767 -1.7490 1.2492 23 6 3.5700 -0.7207 1.2495 24 6 4.0800 -1.4426 2.4984 25 6 3.5695 -0.7223 3.7480 26 6 2.0395 -0.7229 3.7477 27 1 1.6765 -1.7507 3.7469 28 6 1.5290 -0.0021 4.9970 29 6 1.5301 -0.0001 2.4984 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2491 -1.6317 -1.1527 34 1 3.5617 0.0700 -5.1339 35 1 2.1378 1.0305 -4.6574 36 1 1.7703 -0.3028 -6.7644 37 1 0.6314 -0.7245 -5.4627 38 1 3.2001 -2.2361 -6.1229 39 1 3.6253 -3.9586 -6.5704 40 1 0.9391 -2.8030 -4.1518 41 1 2.3019 -3.8949 -4.4997 42 1 3.9017 -2.2255 -3.6870 43 1 2.6620 -2.4918 -2.4360 44 1 3.9337 -1.2343 0.3596 45 1 3.9330 0.3071 1.2498 46 1 3.7171 -2.4704 2.4977 47 1 5.1700 -1.4418 2.4989 48 1 3.9325 -1.2369 4.6377 49 1 3.9325 0.3054 3.7487 50 1 1.8919 1.0257 4.9973 51 1 0.4390 -0.0029 4.9970 52 1 1.8923 -0.5159 5.8869 53 1 1.8934 1.0275 2.4985 54 1 0.4400 -0.0001 2.4985 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564296261.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:41 Heat of formation + Delta-G solvation = -88.166497 kcal Electronic energy + Delta-G solvation = -28763.656248 eV Core-core repulsion = 25118.697568 eV Total energy + Delta-G solvation = -3644.958680 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -41.62339 -40.12185 -38.67574 -36.57229 -35.57826 -33.60891 -33.11471 -32.25300 -31.67909 -29.66598 -27.66961 -27.13819 -25.23637 -24.49940 -23.95860 -22.44054 -22.05451 -21.39413 -20.83170 -20.32712 -19.32553 -18.51144 -17.46420 -16.58279 -16.28994 -15.96481 -15.65651 -15.63641 -15.40418 -15.26863 -15.15513 -14.72628 -14.55101 -14.41456 -14.31632 -14.13098 -13.90837 -13.67050 -13.28537 -13.19431 -13.05364 -12.73770 -12.63508 -12.59810 -12.45008 -12.38092 -12.16984 -12.11833 -11.95710 -11.85039 -11.68921 -11.55735 -11.31747 -11.25362 -11.10170 -10.94263 -10.86251 -10.58809 -10.42649 -10.14928 -9.45553 -8.55701 -6.27386 1.54490 1.60392 1.64343 1.80155 2.12612 2.58476 2.86193 3.21834 3.55378 3.77064 3.81673 3.96750 4.06780 4.10617 4.20972 4.22939 4.27252 4.28618 4.36515 4.44982 4.45762 4.50829 4.58524 4.61504 4.66203 4.70610 4.76510 4.77185 4.82898 4.84101 4.91522 4.97591 4.99467 5.03576 5.08872 5.12234 5.13377 5.20414 5.23759 5.30094 5.34901 5.38545 5.39318 5.44292 5.51679 5.56139 5.62539 5.66924 5.76833 5.99711 6.14877 6.26276 6.71220 6.94433 7.50547 7.53743 8.83299 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.021130 B = 0.002567 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.837797 B =10905.114319 C =11269.455802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.164 3.836 3 H 0.065 0.935 4 N -0.730 5.730 5 C 0.705 3.295 6 O -0.635 6.635 7 N -0.623 5.623 8 C 0.136 3.864 9 C -0.107 4.107 10 C 0.026 3.974 11 C -0.606 4.606 12 H 0.037 0.963 13 C -0.026 4.026 14 N -0.937 5.937 15 Si 1.107 2.893 16 H -0.276 1.276 17 H -0.273 1.273 18 H -0.285 1.285 19 C -0.109 4.109 20 C 0.120 3.880 21 C -0.082 4.082 22 H 0.084 0.916 23 C -0.112 4.112 24 C -0.116 4.116 25 C -0.113 4.113 26 C -0.088 4.088 27 H 0.073 0.927 28 C -0.146 4.146 29 C -0.105 4.105 30 H 0.087 0.913 31 H 0.030 0.970 32 H 0.064 0.936 33 H 0.404 0.596 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.041 0.959 38 H 0.011 0.989 39 H 0.261 0.739 40 H 0.043 0.957 41 H 0.047 0.953 42 H 0.067 0.933 43 H 0.096 0.904 44 H 0.055 0.945 45 H 0.051 0.949 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.067 0.933 49 H 0.056 0.944 50 H 0.052 0.948 51 H 0.057 0.943 52 H 0.058 0.942 53 H 0.059 0.941 54 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.778 5.478 24.445 25.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.059 3.941 3 H 0.083 0.917 4 N -0.387 5.387 5 C 0.407 3.593 6 O -0.517 6.517 7 N -0.359 5.359 8 C 0.013 3.987 9 C -0.145 4.145 10 C 0.007 3.993 11 C -0.644 4.644 12 H 0.055 0.945 13 C -0.225 4.225 14 N -0.574 5.574 15 Si 0.930 3.070 16 H -0.202 1.202 17 H -0.199 1.199 18 H -0.210 1.210 19 C -0.148 4.148 20 C -0.003 4.003 21 C -0.101 4.101 22 H 0.103 0.897 23 C -0.150 4.150 24 C -0.154 4.154 25 C -0.151 4.151 26 C -0.107 4.107 27 H 0.091 0.909 28 C -0.204 4.204 29 C -0.142 4.142 30 H 0.106 0.894 31 H 0.049 0.951 32 H 0.083 0.917 33 H 0.242 0.758 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.029 0.971 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.114 0.886 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.085 0.915 47 H 0.080 0.920 48 H 0.086 0.914 49 H 0.075 0.925 50 H 0.071 0.929 51 H 0.076 0.924 52 H 0.077 0.923 53 H 0.078 0.922 54 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.906 5.040 23.417 23.970 hybrid contribution 0.168 0.936 0.421 1.040 sum -0.738 5.975 23.838 24.587 Atomic orbital electron populations 1.22218 0.95230 1.02454 1.01950 1.20907 0.93838 0.96413 0.82904 0.91652 1.45326 1.71125 1.13988 1.08300 1.15983 0.77604 0.84662 0.81080 1.90827 1.60748 1.14403 1.85731 1.47319 1.71171 1.10904 1.06516 1.21429 0.99866 0.95837 0.81558 1.21790 0.98212 0.96852 0.97679 1.18818 0.95593 0.92013 0.92880 1.22286 1.02548 1.13126 1.26409 0.94450 1.27030 0.97610 0.97615 1.00219 1.70915 1.08083 1.43934 1.34480 0.83045 0.73995 0.75128 0.74830 1.20188 1.19866 1.21009 1.21860 0.98300 0.98482 0.96142 1.21734 0.99077 0.79333 1.00108 1.21368 0.95704 1.00257 0.92798 0.89723 1.21537 0.94726 1.00513 0.98216 1.21514 1.00292 0.99507 0.94084 1.21601 0.95273 1.00548 0.97648 1.21116 0.95287 0.99878 0.94408 0.90893 1.21813 1.01156 1.00345 0.97057 1.21659 1.01019 0.99008 0.92564 0.89449 0.95094 0.91718 0.75788 0.91689 0.90226 0.92200 0.94064 0.97121 0.92820 0.93814 0.93426 0.91438 0.88622 0.92664 0.93046 0.91481 0.91974 0.91420 0.92472 0.92898 0.92361 0.92271 0.92202 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.35 9.13 71.98 0.66 -2.70 16 2 C 0.16 3.58 2.20 44.99 0.10 3.68 16 3 H 0.07 1.74 7.51 -2.39 -0.02 1.72 16 4 N -0.73 -18.65 4.30 -457.80 -1.97 -20.62 16 5 C 0.71 24.19 8.26 179.05 1.48 25.67 16 6 O -0.63 -26.10 15.41 -3.99 -0.06 -26.16 16 7 N -0.62 -21.62 2.97 -836.90 -2.49 -24.11 16 8 C 0.14 5.06 6.42 86.36 0.55 5.61 16 9 C -0.11 -4.50 5.34 30.67 0.16 -4.34 16 10 C 0.03 1.23 1.80 -11.51 -0.02 1.21 16 11 C -0.61 -33.09 8.31 25.60 0.21 -32.87 16 12 H 0.04 2.07 7.81 -2.91 -0.02 2.05 16 13 C -0.03 -1.45 5.45 84.65 0.46 -0.99 16 14 N -0.94 -54.90 13.63 21.44 0.29 -54.61 16 15 Si 1.11 49.40 29.91 68.60 2.05 51.45 16 16 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 17 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 19 C -0.11 -4.49 5.34 30.67 0.16 -4.32 16 20 C 0.12 3.87 6.43 86.36 0.56 4.42 16 21 C -0.08 -1.27 1.82 -10.80 -0.02 -1.29 16 22 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 23 C -0.11 -1.84 5.04 30.59 0.15 -1.68 16 24 C -0.12 -1.54 5.92 30.60 0.18 -1.36 16 25 C -0.11 -1.34 5.20 30.60 0.16 -1.18 16 26 C -0.09 -1.00 2.72 -10.78 -0.03 -1.03 16 27 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 28 C -0.15 -1.46 9.19 71.98 0.66 -0.80 16 29 C -0.10 -1.37 4.13 30.61 0.13 -1.24 16 30 H 0.09 1.42 6.43 -2.39 -0.02 1.41 16 31 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 33 H 0.40 8.68 5.85 -92.71 -0.54 8.14 16 34 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.08 2.99 7.03 -2.39 -0.02 2.97 16 36 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 37 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.01 0.55 6.66 -2.39 -0.02 0.54 16 39 H 0.26 15.22 6.65 -92.70 -0.62 14.60 16 40 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.10 2.38 5.56 -2.38 -0.01 2.37 16 44 H 0.05 0.99 7.45 -2.39 -0.02 0.97 16 45 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 50 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 51 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 52 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 53 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 54 H 0.08 0.90 6.43 -2.38 -0.02 0.88 16 Total: -1.00 -66.24 402.34 3.85 -62.39 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: 0.46 Total: 24.88 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: 5.56 Total: -13.22 kcal Atomic # 7 Polarization: -95.17 SS G_CDS: -4.16 Total: -99.34 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.06 Total: -26.16 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 2.05 Total: 51.45 kcal Total: -66.24 3.85 -62.39 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564296261.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.777 kcal (2) G-P(sol) polarization free energy of solvation -66.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds