Wall clock time and date at job start Tue Mar 31 2020 15:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 109.47102 * 2 1 4 4 C 1.52997 * 109.47522 * 239.99843 * 2 1 3 5 5 C 1.53005 * 109.46759 * 300.00171 * 4 2 1 6 6 C 1.52998 * 109.46989 * 299.99174 * 5 4 2 7 7 C 1.53005 * 109.46515 * 60.00393 * 6 5 4 8 8 C 1.52997 * 109.47309 * 299.99636 * 7 6 5 9 9 H 1.09004 * 109.46789 * 300.00231 * 8 7 6 10 10 C 1.52999 * 109.47126 * 180.02562 * 8 7 6 11 11 N 1.46497 * 109.47098 * 64.99850 * 10 8 7 12 12 C 1.34783 * 119.99944 * 179.97438 * 11 10 8 13 13 O 1.21587 * 119.99678 * 355.02583 * 12 11 10 14 14 N 1.34770 * 120.00167 * 175.01976 * 12 11 10 15 15 C 1.46925 * 120.63204 * 184.95163 * 14 12 11 16 16 C 1.52764 * 109.00849 * 233.58435 * 15 14 12 17 17 C 1.53043 * 109.38144 * 305.58647 * 16 15 14 18 18 C 1.52994 * 109.44827 * 181.25479 * 17 16 15 19 19 C 1.50699 * 109.47497 * 64.93820 * 18 17 16 20 20 H 1.08008 * 119.99765 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00354 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00094 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99779 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47195 * 89.99749 * 23 21 19 25 25 H 1.48506 * 109.46594 * 209.99536 * 23 21 19 26 26 H 1.48500 * 109.47185 * 329.99550 * 23 21 19 27 27 C 1.53043 * 109.53846 * 61.23747 * 17 16 15 28 28 C 1.46925 * 120.63106 * 5.22834 * 14 12 11 29 29 H 1.08997 * 109.47448 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47410 * 299.99965 * 1 2 3 31 31 H 1.09000 * 109.47694 * 60.00492 * 1 2 3 32 32 H 1.09000 * 109.47881 * 179.97438 * 4 2 1 33 33 H 1.09000 * 109.46909 * 59.99184 * 4 2 1 34 34 H 1.09007 * 109.46746 * 179.97438 * 5 4 2 35 35 H 1.09000 * 109.47323 * 60.00035 * 5 4 2 36 36 H 1.08997 * 109.46921 * 179.97438 * 6 5 4 37 37 H 1.08995 * 109.47330 * 300.00533 * 6 5 4 38 38 H 1.09003 * 109.47102 * 60.00416 * 7 6 5 39 39 H 1.09001 * 109.46732 * 179.97438 * 7 6 5 40 40 H 1.08993 * 109.47029 * 184.99994 * 10 8 7 41 41 H 1.09001 * 109.46727 * 305.00067 * 10 8 7 42 42 H 0.96998 * 120.00191 * 0.02562 * 11 10 8 43 43 H 1.09000 * 109.58397 * 353.41456 * 15 14 12 44 44 H 1.09000 * 109.59095 * 113.84249 * 15 14 12 45 45 H 1.08997 * 109.56425 * 185.55652 * 16 15 14 46 46 H 1.08998 * 109.38999 * 65.50783 * 16 15 14 47 47 H 1.09007 * 109.45986 * 301.21739 * 17 16 15 48 48 H 1.09002 * 109.47172 * 184.93875 * 18 17 16 49 49 H 1.09000 * 109.47154 * 304.93751 * 18 17 16 50 50 H 0.97000 * 119.99652 * 180.02562 * 22 21 19 51 51 H 1.09003 * 109.49758 * 178.68382 * 27 17 16 52 52 H 1.09000 * 109.51846 * 58.60564 * 27 17 16 53 53 H 1.09001 * 109.59153 * 246.15759 * 28 14 12 54 54 H 1.09002 * 109.58864 * 6.57838 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5300 -2.1638 -1.2491 6 6 2.0401 -2.8850 0.0001 7 6 1.5300 -2.1636 1.2493 8 6 2.0400 -0.7211 1.2493 9 1 3.1300 -0.7212 1.2493 10 6 1.5304 0.0000 2.4988 11 7 2.1150 -0.6177 3.6916 12 6 1.8073 -0.1440 4.9153 13 8 1.1175 0.8511 5.0262 14 7 2.2642 -0.7733 6.0160 15 6 1.8498 -0.3344 7.3556 16 6 3.0951 -0.0742 8.2012 17 6 3.9832 -1.3206 8.1945 18 6 5.2157 -1.0726 9.0664 19 6 4.7887 -0.8931 10.5005 20 1 3.7428 -0.9507 10.7638 21 6 5.7333 -0.6566 11.4766 22 7 5.3606 -0.4995 12.7281 23 14 7.5423 -0.5578 11.0214 24 1 7.8936 0.8467 10.6906 25 1 8.3669 -1.0175 12.1677 26 1 7.8045 -1.4241 9.8441 27 6 4.4254 -1.6262 6.7616 28 6 3.1908 -1.9076 5.8995 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 3.1300 -0.7209 -1.2495 33 1 1.6766 -0.2075 -2.1392 34 1 1.8930 -2.6775 -2.1393 35 1 0.4400 -2.1638 -1.2492 36 1 1.6763 -3.9125 0.0004 37 1 3.1300 -2.8849 0.0001 38 1 0.4400 -2.1637 1.2494 39 1 1.8930 -2.6776 2.1393 40 1 1.8188 1.0502 2.4551 41 1 0.4441 -0.0770 2.5450 42 1 2.7240 -1.3672 3.6007 43 1 1.2662 0.5826 7.2753 44 1 1.2486 -1.1127 7.8255 45 1 2.7997 0.1564 9.2247 46 1 3.6469 0.7678 7.7833 47 1 3.4230 -2.1678 8.5902 48 1 5.8907 -1.9253 8.9923 49 1 5.7276 -0.1731 8.7245 50 1 6.0251 -0.3327 13.4147 51 1 5.0768 -2.5003 6.7605 52 1 4.9647 -0.7701 6.3564 53 1 2.7012 -2.8168 6.2482 54 1 3.4916 -2.0283 4.8588 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566149551.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:05 Heat of formation + Delta-G solvation = -84.685962 kcal Electronic energy + Delta-G solvation = -28258.199755 eV Core-core repulsion = 24613.392003 eV Total energy + Delta-G solvation = -3644.807752 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.55724 -40.31538 -38.82267 -35.95755 -35.65662 -34.06468 -33.00015 -32.28212 -31.58183 -30.22742 -28.05620 -26.61759 -25.87158 -24.09656 -23.40236 -22.98227 -22.18965 -21.37240 -20.57403 -19.45060 -19.00636 -18.68401 -17.39387 -16.79907 -16.49506 -16.36653 -16.06955 -15.44104 -15.35053 -15.22468 -15.01539 -14.88061 -14.72095 -14.46170 -14.38868 -14.10151 -13.81353 -13.58791 -13.52317 -13.43431 -13.12354 -12.83923 -12.74851 -12.39859 -12.39431 -12.35715 -12.15269 -11.97710 -11.91282 -11.75215 -11.70574 -11.43839 -11.29737 -11.07390 -11.05710 -10.92969 -10.83741 -10.80168 -10.71783 -10.18471 -9.43089 -8.24884 -6.26810 1.36699 1.37331 1.49055 1.66707 2.13104 2.38230 2.94117 3.10647 3.65725 3.76833 3.81588 3.91977 3.98261 4.05141 4.22033 4.22818 4.31980 4.34337 4.41751 4.48155 4.50144 4.52808 4.55882 4.65764 4.69355 4.76961 4.79273 4.83809 4.86880 4.91456 4.95983 4.99325 5.07943 5.10873 5.14737 5.19274 5.23769 5.24876 5.30778 5.31338 5.32785 5.39957 5.45140 5.48385 5.51206 5.57504 5.62059 5.70246 5.72724 5.75975 6.00068 6.35188 6.81221 6.98198 7.36841 7.55599 8.91652 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.025396 B = 0.002285 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.284444 B =12250.501657 C =12753.422828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.082 4.082 3 H 0.069 0.931 4 C -0.110 4.110 5 C -0.122 4.122 6 C -0.117 4.117 7 C -0.115 4.115 8 C -0.083 4.083 9 H 0.083 0.917 10 C 0.143 3.857 11 N -0.731 5.731 12 C 0.701 3.299 13 O -0.640 6.640 14 N -0.624 5.624 15 C 0.137 3.863 16 C -0.113 4.113 17 C -0.068 4.068 18 C -0.007 4.007 19 C -0.517 4.517 20 H 0.037 0.963 21 C -0.001 4.001 22 N -0.954 5.954 23 Si 0.947 3.053 24 H -0.274 1.274 25 H -0.287 1.287 26 H -0.242 1.242 27 C -0.125 4.125 28 C 0.116 3.884 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.048 0.952 41 H 0.057 0.943 42 H 0.408 0.592 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.057 0.943 46 H 0.044 0.956 47 H 0.061 0.939 48 H 0.023 0.977 49 H 0.009 0.991 50 H 0.263 0.737 51 H 0.092 0.908 52 H 0.057 0.943 53 H 0.085 0.915 54 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.845 -6.350 -32.398 33.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.101 4.101 3 H 0.087 0.913 4 C -0.148 4.148 5 C -0.159 4.159 6 C -0.154 4.154 7 C -0.153 4.153 8 C -0.102 4.102 9 H 0.101 0.899 10 C 0.019 3.981 11 N -0.390 5.390 12 C 0.402 3.598 13 O -0.522 6.522 14 N -0.361 5.361 15 C 0.014 3.986 16 C -0.151 4.151 17 C -0.087 4.087 18 C -0.044 4.044 19 C -0.555 4.555 20 H 0.055 0.945 21 C -0.197 4.197 22 N -0.595 5.595 23 Si 0.771 3.229 24 H -0.200 1.200 25 H -0.213 1.213 26 H -0.166 1.166 27 C -0.164 4.164 28 C -0.006 4.006 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.247 0.753 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.076 0.924 46 H 0.063 0.937 47 H 0.079 0.921 48 H 0.041 0.959 49 H 0.027 0.973 50 H 0.072 0.928 51 H 0.110 0.890 52 H 0.076 0.924 53 H 0.103 0.897 54 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.297 -5.635 -32.183 33.274 hybrid contribution 0.912 0.267 0.960 1.351 sum -5.384 -5.368 -31.223 32.135 Atomic orbital electron populations 1.22002 0.95240 1.02335 1.01554 1.21028 0.96063 0.99080 0.93937 0.91290 1.21529 1.00679 0.95713 0.96859 1.21585 1.01010 0.95435 0.97911 1.21510 1.00953 0.98901 0.94040 1.21628 1.01070 0.94115 0.98447 1.21341 1.00958 0.95462 0.92413 0.89889 1.21331 0.97580 0.96358 0.82783 1.45185 1.51806 1.38363 1.03669 1.16051 0.80090 0.82203 0.81453 1.90862 1.46419 1.28495 1.86438 1.47354 1.49225 1.34797 1.04700 1.21298 0.96171 1.00422 0.80753 1.21696 0.96152 0.98148 0.99126 1.20912 0.96141 0.96891 0.94758 1.19585 0.95329 0.96061 0.93431 1.21501 0.94060 1.47273 0.92703 0.94474 1.26011 1.04168 0.94769 0.94747 1.70078 1.35800 1.51754 1.01918 0.85711 0.79416 0.79190 0.78613 1.19979 1.21317 1.16561 1.21984 0.97573 1.02585 0.94223 1.21832 0.89318 0.88331 1.01127 0.91655 0.93494 0.92236 0.91731 0.91498 0.91641 0.91809 0.91630 0.91654 0.91883 0.91764 0.93324 0.92466 0.75311 0.90934 0.90826 0.92403 0.93668 0.92052 0.95863 0.97296 0.92801 0.88981 0.92413 0.89666 0.87971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.15 71.98 0.59 -1.20 16 2 C -0.08 -0.90 2.72 -10.80 -0.03 -0.93 16 3 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 4 C -0.11 -0.97 5.45 30.59 0.17 -0.81 16 5 C -0.12 -1.01 5.65 30.60 0.17 -0.84 16 6 C -0.12 -0.99 5.92 30.60 0.18 -0.81 16 7 C -0.12 -1.19 4.80 30.59 0.15 -1.04 16 8 C -0.08 -0.98 2.00 -10.80 -0.02 -1.00 16 9 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 10 C 0.14 2.64 4.57 86.38 0.39 3.04 16 11 N -0.73 -14.86 5.19 -478.55 -2.48 -17.34 16 12 C 0.70 20.69 8.30 179.05 1.49 22.18 16 13 O -0.64 -24.70 15.77 -3.99 -0.06 -24.77 16 14 N -0.62 -17.24 2.98 -837.75 -2.49 -19.73 16 15 C 0.14 4.39 6.41 86.22 0.55 4.95 16 16 C -0.11 -4.20 5.17 30.53 0.16 -4.04 16 17 C -0.07 -2.46 2.10 -10.77 -0.02 -2.48 16 18 C -0.01 -0.30 3.52 29.85 0.10 -0.20 16 19 C -0.52 -29.16 8.94 25.60 0.23 -28.93 16 20 H 0.04 2.30 7.30 -2.91 -0.02 2.28 16 21 C 0.00 -0.06 5.47 84.65 0.46 0.41 16 22 N -0.95 -60.17 13.96 21.45 0.30 -59.87 16 23 Si 0.95 44.33 27.47 68.60 1.88 46.21 16 24 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 26 H -0.24 -10.31 6.54 99.48 0.65 -9.66 16 27 C -0.13 -3.26 5.36 30.67 0.16 -3.09 16 28 C 0.12 2.38 6.39 86.36 0.55 2.93 16 29 H 0.06 0.71 4.81 -2.39 -0.01 0.70 16 30 H 0.05 0.66 6.55 -2.39 -0.02 0.65 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 35 H 0.06 0.56 6.43 -2.39 -0.02 0.54 16 36 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.06 0.74 6.43 -2.39 -0.02 0.73 16 39 H 0.06 0.64 7.18 -2.39 -0.02 0.62 16 40 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.06 1.18 6.71 -2.39 -0.02 1.17 16 42 H 0.41 5.87 5.14 -92.71 -0.48 5.40 16 43 H 0.07 2.55 6.99 -2.39 -0.02 2.54 16 44 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.06 2.48 6.91 -2.39 -0.02 2.47 16 46 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 48 H 0.02 1.01 7.20 -2.39 -0.02 0.99 16 49 H 0.01 0.40 7.57 -2.39 -0.02 0.38 16 50 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 51 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 52 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 53 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 54 H 0.10 1.39 5.65 -2.39 -0.01 1.37 16 Total: -1.00 -72.49 392.35 2.76 -69.74 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.33 Total: 17.64 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 5.28 Total: -11.88 kcal Atomic # 7 Polarization: -92.26 SS G_CDS: -4.68 Total: -96.94 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.06 Total: -24.77 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.88 Total: 46.21 kcal Total: -72.49 2.76 -69.74 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566149551.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.949 kcal (2) G-P(sol) polarization free energy of solvation -72.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds