Wall clock time and date at job start Tue Mar 31 2020 15:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47283 * 2 1 4 4 C 1.52996 * 109.47169 * 120.00306 * 2 1 3 5 5 C 1.52995 * 109.47348 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47337 * 300.00090 * 5 4 2 7 7 C 1.52996 * 109.46975 * 59.99681 * 6 5 4 8 8 C 1.52998 * 109.47169 * 299.99988 * 7 6 5 9 9 H 1.08997 * 109.47541 * 299.99820 * 8 7 6 10 10 C 1.53006 * 109.47230 * 180.02562 * 8 7 6 11 11 N 1.46495 * 109.47004 * 64.99836 * 10 8 7 12 12 C 1.34776 * 120.00226 * 180.02562 * 11 10 8 13 13 O 1.21591 * 119.99843 * 355.01783 * 12 11 10 14 14 N 1.34771 * 120.00382 * 175.01617 * 12 11 10 15 15 C 1.46927 * 120.63076 * 4.94363 * 14 12 11 16 16 C 1.53624 * 108.54106 * 126.36693 * 15 14 12 17 17 C 1.53038 * 109.24412 * 54.85959 * 16 15 14 18 18 C 1.52996 * 109.46375 * 178.48794 * 17 16 15 19 19 C 1.50701 * 109.47137 * 295.07230 * 18 17 16 20 20 H 1.07994 * 119.99703 * 359.97438 * 19 18 17 21 21 C 1.37884 * 119.99954 * 180.02562 * 19 18 17 22 22 N 1.31507 * 119.99960 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99733 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47121 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47104 * 119.99602 * 23 21 19 26 26 H 1.48502 * 109.46956 * 239.99531 * 23 21 19 27 27 C 1.53045 * 109.53888 * 298.50981 * 17 16 15 28 28 C 1.46936 * 120.63208 * 185.22384 * 14 12 11 29 29 H 1.08997 * 109.47283 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47126 * 300.00155 * 1 2 3 31 31 H 1.09002 * 109.47120 * 59.99962 * 1 2 3 32 32 H 1.09007 * 109.47273 * 59.99686 * 4 2 1 33 33 H 1.09003 * 109.47407 * 300.00078 * 4 2 1 34 34 H 1.09002 * 109.47300 * 179.97438 * 5 4 2 35 35 H 1.08997 * 109.47187 * 60.00287 * 5 4 2 36 36 H 1.09007 * 109.46874 * 299.99738 * 6 5 4 37 37 H 1.09003 * 109.47319 * 180.02562 * 6 5 4 38 38 H 1.09006 * 109.47154 * 180.02562 * 7 6 5 39 39 H 1.08997 * 109.47268 * 60.00303 * 7 6 5 40 40 H 1.08996 * 109.47226 * 185.00233 * 10 8 7 41 41 H 1.09004 * 109.46557 * 305.00598 * 10 8 7 42 42 H 0.96999 * 120.00258 * 0.02562 * 11 10 8 43 43 H 1.08998 * 109.58880 * 246.19960 * 15 14 12 44 44 H 1.08996 * 109.58317 * 6.62695 * 15 14 12 45 45 H 1.08995 * 109.63717 * 294.86365 * 16 15 14 46 46 H 1.09002 * 109.42738 * 174.72778 * 16 15 14 47 47 H 1.08996 * 109.46200 * 58.52902 * 17 16 15 48 48 H 1.08998 * 109.47056 * 55.06666 * 18 17 16 49 49 H 1.08995 * 109.47443 * 175.06457 * 18 17 16 50 50 H 0.97003 * 120.00012 * 179.97438 * 22 21 19 51 51 H 1.09000 * 109.49075 * 301.41520 * 27 17 16 52 52 H 1.08991 * 109.50000 * 181.32044 * 27 17 16 53 53 H 1.09004 * 109.58359 * 353.36960 * 28 14 12 54 54 H 1.08994 * 109.58582 * 113.65537 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5699 -0.7219 1.2489 6 6 4.0795 -1.4434 -0.0004 7 6 3.5695 -0.7221 -1.2495 8 6 2.0395 -0.7216 -1.2492 9 1 1.6758 -1.7491 -1.2491 10 6 1.5294 -0.0008 -2.4988 11 7 1.9166 -0.7582 -3.6916 12 6 1.5734 -0.3098 -4.9153 13 8 0.8661 0.6729 -5.0265 14 7 2.0142 -0.9506 -6.0160 15 6 2.7788 -2.1998 -5.8990 16 6 2.0972 -3.2724 -6.7623 17 6 1.9578 -2.7530 -8.1951 18 6 1.3136 -3.8319 -9.0680 19 6 2.2361 -5.0200 -9.1608 20 1 3.1868 -5.0067 -8.6487 21 6 1.8666 -6.1236 -9.9002 22 7 0.7090 -6.1395 -10.5241 23 14 3.0104 -7.5959 -10.0158 24 1 4.2418 -7.3290 -9.2299 25 1 2.3270 -8.7974 -9.4731 26 1 3.3718 -7.8316 -11.4368 27 6 1.0794 -1.4998 -8.2021 28 6 1.7446 -0.4101 -7.3554 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6766 -1.7490 1.2492 33 1 1.6767 -0.2075 2.1392 34 1 3.9333 -1.2354 2.1391 35 1 3.9337 0.3056 1.2488 36 1 3.7158 -2.4710 -0.0002 37 1 5.1695 -1.4442 -0.0003 38 1 3.9321 -1.2364 -2.1396 39 1 3.9332 0.3054 -1.2497 40 1 0.4432 0.0778 -2.4550 41 1 1.9645 0.9975 -2.5453 42 1 2.4199 -1.5823 -3.6006 43 1 3.7983 -2.0385 -6.2493 44 1 2.7946 -2.5224 -4.8580 45 1 1.1096 -3.4947 -6.3582 46 1 2.7036 -4.1781 -6.7610 47 1 2.9437 -2.5076 -8.5899 48 1 0.3671 -4.1407 -8.6245 49 1 1.1340 -3.4324 -10.0660 50 1 0.4493 -6.9157 -11.0447 51 1 0.1014 -1.7389 -7.7844 52 1 0.9613 -1.1440 -9.2255 53 1 1.0778 0.4485 -7.2755 54 1 2.6811 -0.1034 -7.8210 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566149552.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:09 Heat of formation + Delta-G solvation = -90.592372 kcal Electronic energy + Delta-G solvation = -28225.467423 eV Core-core repulsion = 24580.403550 eV Total energy + Delta-G solvation = -3645.063874 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.52171 -40.08428 -38.75107 -35.91081 -35.66078 -34.02500 -33.55790 -32.29424 -31.49914 -29.76269 -27.78319 -26.59018 -25.81861 -24.18788 -23.57059 -22.56211 -21.89534 -21.41681 -20.82398 -20.23686 -19.04967 -18.39129 -17.35345 -16.71716 -16.52163 -16.04089 -15.79110 -15.57416 -15.25110 -15.21291 -15.10089 -14.89246 -14.68356 -14.53022 -14.31203 -14.09159 -13.86384 -13.50405 -13.34534 -13.01029 -12.96069 -12.78142 -12.72326 -12.66015 -12.51533 -12.37719 -12.29387 -12.14876 -11.90180 -11.73113 -11.71892 -11.41520 -11.30042 -11.24867 -11.00240 -10.88955 -10.83650 -10.81938 -10.51950 -10.16327 -9.41462 -8.15147 -6.24705 1.42016 1.42909 1.55172 1.68862 2.13291 2.43815 2.93398 3.18816 3.64596 3.75399 3.80731 3.93340 4.02051 4.09036 4.14318 4.21722 4.27672 4.36838 4.42259 4.47878 4.53046 4.55014 4.60869 4.63669 4.67894 4.72935 4.81313 4.85599 4.88478 4.91942 4.96063 4.98366 5.08892 5.10389 5.14279 5.23205 5.28371 5.32839 5.33973 5.35594 5.38770 5.40039 5.44578 5.48767 5.55197 5.56946 5.61695 5.66422 5.82969 5.91082 6.00362 6.30371 6.92657 6.96515 7.44155 7.55396 8.97147 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.015710 B = 0.002515 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.825361 B =11130.674920 C =12175.664878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.079 4.079 3 H 0.072 0.928 4 C -0.110 4.110 5 C -0.120 4.120 6 C -0.118 4.118 7 C -0.113 4.113 8 C -0.084 4.084 9 H 0.079 0.921 10 C 0.142 3.858 11 N -0.734 5.734 12 C 0.701 3.299 13 O -0.638 6.638 14 N -0.625 5.625 15 C 0.119 3.881 16 C -0.113 4.113 17 C -0.072 4.072 18 C 0.032 3.968 19 C -0.523 4.523 20 H 0.069 0.931 21 C -0.006 4.006 22 N -0.939 5.939 23 Si 0.961 3.039 24 H -0.255 1.255 25 H -0.283 1.283 26 H -0.284 1.284 27 C -0.122 4.122 28 C 0.137 3.863 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.406 0.594 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.042 0.958 46 H 0.077 0.923 47 H 0.065 0.935 48 H -0.018 1.018 49 H -0.014 1.014 50 H 0.260 0.740 51 H 0.042 0.958 52 H 0.071 0.929 53 H 0.078 0.922 54 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.615 11.376 24.755 28.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.098 4.098 3 H 0.090 0.910 4 C -0.148 4.148 5 C -0.157 4.157 6 C -0.156 4.156 7 C -0.151 4.151 8 C -0.103 4.103 9 H 0.097 0.903 10 C 0.018 3.982 11 N -0.393 5.393 12 C 0.403 3.597 13 O -0.520 6.520 14 N -0.362 5.362 15 C -0.004 4.004 16 C -0.151 4.151 17 C -0.090 4.090 18 C -0.006 4.006 19 C -0.561 4.561 20 H 0.087 0.913 21 C -0.203 4.203 22 N -0.580 5.580 23 Si 0.786 3.214 24 H -0.179 1.179 25 H -0.209 1.209 26 H -0.210 1.210 27 C -0.160 4.160 28 C 0.014 3.986 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.245 0.755 43 H 0.105 0.895 44 H 0.114 0.886 45 H 0.061 0.939 46 H 0.096 0.904 47 H 0.084 0.916 48 H 0.000 1.000 49 H 0.004 0.996 50 H 0.069 0.931 51 H 0.060 0.940 52 H 0.090 0.910 53 H 0.096 0.904 54 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.033 11.991 24.599 28.256 hybrid contribution -0.020 -1.333 -0.790 1.550 sum 7.012 10.658 23.809 27.012 Atomic orbital electron populations 1.21935 0.95299 1.01994 1.01860 1.21043 0.95362 0.99605 0.93801 0.90998 1.21563 0.95631 1.00646 0.96935 1.21543 0.95447 1.00829 0.97911 1.21526 1.00526 0.99381 0.94137 1.21589 0.93883 1.01164 0.98440 1.21379 0.96310 0.99973 0.92647 0.90264 1.21368 0.99492 0.94669 0.82665 1.45230 1.61117 1.29023 1.03887 1.16032 0.79850 0.82441 0.81405 1.90849 1.43861 1.30885 1.86437 1.47380 1.57772 1.25961 1.05068 1.21897 0.95299 0.82370 1.00788 1.21854 1.00353 0.98289 0.94591 1.21020 0.98502 0.93920 0.95592 1.19031 0.94680 0.93457 0.93387 1.21700 1.04094 1.00783 1.29536 0.91265 1.25996 0.96722 1.02063 0.95494 1.70126 1.23014 1.31014 1.33845 0.85454 0.79305 0.78796 0.77831 1.17853 1.20929 1.21002 1.21923 0.98528 0.95771 0.99822 1.21428 1.00825 0.95845 0.80506 0.92653 0.91831 0.93199 0.91931 0.91292 0.91455 0.92036 0.91842 0.91543 0.91832 0.92014 0.92575 0.92696 0.75489 0.89495 0.88618 0.93948 0.90423 0.91613 0.99957 0.99610 0.93111 0.93959 0.90993 0.90378 0.89995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.85 71.98 0.64 -1.38 16 2 C -0.08 -0.96 2.25 -10.79 -0.02 -0.98 16 3 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 4 C -0.11 -1.12 5.20 30.59 0.16 -0.96 16 5 C -0.12 -1.15 5.92 30.59 0.18 -0.97 16 6 C -0.12 -1.22 5.92 30.59 0.18 -1.04 16 7 C -0.11 -1.37 5.08 30.59 0.16 -1.21 16 8 C -0.08 -1.14 1.75 -10.79 -0.02 -1.16 16 9 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 10 C 0.14 2.79 4.85 86.38 0.42 3.21 16 11 N -0.73 -16.26 5.19 -478.54 -2.48 -18.75 16 12 C 0.70 21.30 8.30 179.06 1.49 22.78 16 13 O -0.64 -24.42 15.77 -4.00 -0.06 -24.48 16 14 N -0.63 -17.85 2.97 -836.05 -2.48 -20.33 16 15 C 0.12 2.88 6.42 86.51 0.56 3.44 16 16 C -0.11 -3.72 5.21 30.82 0.16 -3.56 16 17 C -0.07 -2.76 2.10 -10.77 -0.02 -2.78 16 18 C 0.03 1.62 4.45 29.85 0.13 1.75 16 19 C -0.52 -28.29 8.39 25.60 0.21 -28.07 16 20 H 0.07 3.49 7.06 -2.91 -0.02 3.47 16 21 C -0.01 -0.33 5.46 84.66 0.46 0.13 16 22 N -0.94 -57.13 13.29 21.45 0.28 -56.84 16 23 Si 0.96 43.20 29.54 68.60 2.03 45.23 16 24 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 27 C -0.12 -4.22 5.36 30.67 0.16 -4.06 16 28 C 0.14 4.09 6.44 86.36 0.56 4.65 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 0.78 6.32 -2.39 -0.02 0.76 16 32 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 37 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.06 0.76 7.18 -2.38 -0.02 0.75 16 39 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.06 1.27 6.17 -2.39 -0.01 1.26 16 41 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 42 H 0.41 7.04 5.14 -92.71 -0.48 6.57 16 43 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.10 1.76 5.64 -2.39 -0.01 1.74 16 45 H 0.04 1.52 8.14 -2.39 -0.02 1.51 16 46 H 0.08 2.67 6.91 -2.39 -0.02 2.65 16 47 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 48 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 49 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 50 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 51 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 52 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 53 H 0.08 2.49 7.00 -2.38 -0.02 2.48 16 54 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -69.43 402.58 3.05 -66.38 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.37 Total: 19.02 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: 5.40 Total: -10.22 kcal Atomic # 7 Polarization: -91.24 SS G_CDS: -4.68 Total: -95.92 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.06 Total: -24.48 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -69.43 3.05 -66.38 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566149552.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.214 kcal (2) G-P(sol) polarization free energy of solvation -69.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds