Wall clock time and date at job start Tue Mar 31 2020 15:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.47184 * 2 1 4 4 C 1.53000 * 109.46655 * 119.99397 * 2 1 3 5 5 C 1.52996 * 109.47196 * 60.00150 * 4 2 1 6 6 C 1.52997 * 109.47340 * 59.99790 * 5 4 2 7 7 C 1.53006 * 109.47112 * 299.99917 * 6 5 4 8 8 C 1.52997 * 109.47198 * 239.99189 * 2 1 3 9 9 H 1.08996 * 109.47211 * 179.97438 * 8 2 1 10 10 C 1.53006 * 109.47112 * 60.00188 * 8 2 1 11 11 N 1.46500 * 109.47153 * 174.99924 * 10 8 2 12 12 C 1.34771 * 119.99943 * 180.02562 * 11 10 8 13 13 O 1.21592 * 119.99886 * 4.98196 * 12 11 10 14 14 N 1.34778 * 120.00100 * 184.98595 * 12 11 10 15 15 C 1.46925 * 120.62918 * 354.76751 * 14 12 11 16 16 C 1.53193 * 108.77886 * 233.63332 * 15 14 12 17 17 C 1.53043 * 109.30966 * 305.36737 * 16 15 14 18 18 C 1.52997 * 109.45533 * 181.38300 * 17 16 15 19 19 C 1.50708 * 109.46904 * 175.00082 * 18 17 16 20 20 H 1.07997 * 119.99700 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00010 * 180.02562 * 19 18 17 22 22 N 1.31519 * 120.00004 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00091 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47003 * 179.97438 * 23 21 19 25 25 H 1.48495 * 109.47184 * 300.00277 * 23 21 19 26 26 H 1.48497 * 109.46835 * 60.00094 * 23 21 19 27 27 C 1.53042 * 109.53897 * 61.36573 * 17 16 15 28 28 C 1.46925 * 120.63187 * 174.79670 * 14 12 11 29 29 H 1.08991 * 109.47061 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46884 * 300.00861 * 1 2 3 31 31 H 1.09006 * 109.46647 * 60.00168 * 1 2 3 32 32 H 1.09004 * 109.47263 * 299.99509 * 4 2 1 33 33 H 1.09005 * 109.46680 * 180.02562 * 4 2 1 34 34 H 1.08996 * 109.47312 * 299.99431 * 5 4 2 35 35 H 1.09003 * 109.47182 * 180.02562 * 5 4 2 36 36 H 1.09000 * 109.46983 * 180.02562 * 6 5 4 37 37 H 1.08996 * 109.47325 * 60.00357 * 6 5 4 38 38 H 1.08999 * 109.46889 * 300.00436 * 7 6 5 39 39 H 1.08995 * 109.47209 * 179.97438 * 7 6 5 40 40 H 1.09004 * 109.46890 * 54.99909 * 10 8 2 41 41 H 1.08997 * 109.47025 * 295.00182 * 10 8 2 42 42 H 0.97001 * 119.99761 * 359.97438 * 11 10 8 43 43 H 1.09007 * 109.58370 * 113.84514 * 15 14 12 44 44 H 1.09003 * 109.70069 * 353.49538 * 15 14 12 45 45 H 1.08995 * 109.49938 * 185.41443 * 16 15 14 46 46 H 1.09001 * 109.51755 * 65.33071 * 16 15 14 47 47 H 1.08999 * 109.46291 * 301.35826 * 17 16 15 48 48 H 1.08997 * 109.47103 * 55.00133 * 18 17 16 49 49 H 1.09002 * 109.47582 * 294.99559 * 18 17 16 50 50 H 0.96997 * 120.00324 * 359.97438 * 22 21 19 51 51 H 1.08996 * 109.49746 * 58.58218 * 27 17 16 52 52 H 1.08995 * 109.49837 * 178.68201 * 27 17 16 53 53 H 1.09004 * 109.58325 * 246.15833 * 28 14 12 54 54 H 1.09006 * 109.58727 * 6.57563 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.5299 -2.1636 1.2495 6 6 2.0399 -2.8850 0.0004 7 6 1.5300 -2.1639 -1.2490 8 6 2.0401 -0.7214 -1.2491 9 1 3.1300 -0.7210 -1.2493 10 6 1.5301 -0.0003 -2.4985 11 7 2.1143 -0.6180 -3.6915 12 6 1.8062 -0.1444 -4.9151 13 8 1.1164 0.8508 -5.0258 14 7 2.2626 -0.7738 -6.0160 15 6 3.1893 -1.9081 -5.8997 16 6 4.4237 -1.6269 -6.7623 17 6 3.9809 -1.3213 -8.1950 18 6 5.2132 -1.0737 -9.0674 19 6 4.7856 -0.8943 -10.5014 20 1 3.7397 -0.9515 -10.7641 21 6 5.7299 -0.6581 -11.4778 22 7 7.0036 -0.5889 -11.1578 23 14 5.2000 -0.4363 -13.2554 24 1 6.3960 -0.1960 -14.1021 25 1 4.5018 -1.6617 -13.7203 26 1 4.2809 0.7256 -13.3566 27 6 3.0929 -0.0748 -8.2015 28 6 1.8435 -0.3385 -7.3552 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6766 -0.2071 2.1393 33 1 3.1300 -0.7207 1.2496 34 1 0.4400 -2.1636 1.2495 35 1 1.8928 -2.6772 2.1398 36 1 1.6762 -3.9125 0.0003 37 1 3.1299 -2.8851 0.0004 38 1 0.4400 -2.1638 -1.2490 39 1 1.8937 -2.6775 -2.1389 40 1 1.8185 1.0500 -2.4549 41 1 0.4438 -0.0772 -2.5444 42 1 2.7234 -1.3675 -3.6008 43 1 2.6994 -2.8174 -6.2482 44 1 3.4907 -2.0312 -4.8594 45 1 5.0749 -2.5008 -6.7614 46 1 4.9632 -0.7705 -6.3577 47 1 3.4202 -2.1683 -8.5904 48 1 5.8879 -1.9266 -8.9934 49 1 5.7255 -0.1743 -8.7258 50 1 7.2788 -0.7037 -10.2348 51 1 3.6446 0.7671 -7.7832 52 1 2.7971 0.1559 -9.2249 53 1 1.2438 -1.1197 -7.8223 54 1 1.2567 0.5766 -7.2749 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566149553.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:12 Heat of formation + Delta-G solvation = -91.698885 kcal Electronic energy + Delta-G solvation = -28246.341788 eV Core-core repulsion = 24601.229933 eV Total energy + Delta-G solvation = -3645.111856 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.60002 -40.34319 -38.88837 -36.01867 -35.93126 -34.03521 -33.00545 -32.30659 -31.58208 -29.53480 -28.02255 -26.49604 -25.90879 -24.13051 -23.82049 -23.09260 -22.23906 -21.58581 -20.63868 -19.44501 -18.93776 -18.83924 -17.43293 -16.83415 -16.52900 -16.13446 -15.68598 -15.50870 -15.49383 -15.37398 -15.20908 -14.93337 -14.76341 -14.56598 -14.44309 -13.91183 -13.82573 -13.57914 -13.53766 -13.21491 -13.08317 -12.95442 -12.78783 -12.44396 -12.41298 -12.37955 -12.22590 -11.97020 -11.93579 -11.78035 -11.69589 -11.50110 -11.28349 -11.20577 -11.08105 -10.91412 -10.82281 -10.54240 -10.49735 -10.21869 -9.47930 -8.64055 -6.33360 1.52846 1.61017 1.62710 1.79497 2.08486 2.58293 2.88615 3.19519 3.63114 3.74317 3.78654 3.85618 3.91425 3.97020 4.14047 4.20490 4.29915 4.31696 4.34813 4.44333 4.46836 4.48207 4.53359 4.58809 4.67071 4.72857 4.75300 4.77563 4.81665 4.87009 4.90994 4.96176 4.99327 5.08392 5.12851 5.13130 5.18692 5.21803 5.25653 5.28917 5.29569 5.37142 5.37992 5.46388 5.48925 5.53761 5.57843 5.65321 5.68388 5.94551 6.06974 6.23846 6.63227 6.92673 7.47585 7.50904 8.76487 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.029752 B = 0.002183 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.873761 B =12821.718814 C =13285.133339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.082 4.082 3 H 0.068 0.932 4 C -0.111 4.111 5 C -0.122 4.122 6 C -0.117 4.117 7 C -0.115 4.115 8 C -0.084 4.084 9 H 0.081 0.919 10 C 0.143 3.857 11 N -0.732 5.732 12 C 0.701 3.299 13 O -0.638 6.638 14 N -0.625 5.625 15 C 0.120 3.880 16 C -0.125 4.125 17 C -0.066 4.066 18 C 0.017 3.983 19 C -0.604 4.604 20 H 0.055 0.945 21 C -0.044 4.044 22 N -0.943 5.943 23 Si 1.114 2.886 24 H -0.287 1.287 25 H -0.267 1.267 26 H -0.272 1.272 27 C -0.109 4.109 28 C 0.137 3.863 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.059 0.941 42 H 0.407 0.593 43 H 0.088 0.912 44 H 0.101 0.899 45 H 0.082 0.918 46 H 0.048 0.952 47 H 0.064 0.936 48 H -0.011 1.011 49 H -0.022 1.022 50 H 0.254 0.746 51 H 0.035 0.965 52 H 0.066 0.934 53 H 0.080 0.920 54 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.521 -6.031 26.983 30.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.101 4.101 3 H 0.087 0.913 4 C -0.148 4.148 5 C -0.159 4.159 6 C -0.154 4.154 7 C -0.152 4.152 8 C -0.103 4.103 9 H 0.099 0.901 10 C 0.019 3.981 11 N -0.391 5.391 12 C 0.402 3.598 13 O -0.520 6.520 14 N -0.362 5.362 15 C -0.002 4.002 16 C -0.163 4.163 17 C -0.085 4.085 18 C -0.020 4.020 19 C -0.642 4.642 20 H 0.073 0.927 21 C -0.241 4.241 22 N -0.581 5.581 23 Si 0.936 3.064 24 H -0.213 1.213 25 H -0.192 1.192 26 H -0.197 1.197 27 C -0.148 4.148 28 C 0.014 3.986 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.246 0.754 43 H 0.106 0.894 44 H 0.119 0.881 45 H 0.101 0.899 46 H 0.066 0.934 47 H 0.083 0.917 48 H 0.007 0.993 49 H -0.004 1.004 50 H 0.063 0.937 51 H 0.054 0.946 52 H 0.085 0.915 53 H 0.098 0.902 54 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.480 -5.058 25.418 28.765 hybrid contribution 0.263 -0.182 1.225 1.266 sum -12.217 -5.240 26.644 29.776 Atomic orbital electron populations 1.22003 0.95104 1.02376 1.01602 1.21032 0.96170 0.99036 0.93871 0.91331 1.21531 1.00625 0.95762 0.96889 1.21579 1.01067 0.95385 0.97866 1.21512 1.00886 0.98952 0.94089 1.21625 1.01140 0.94048 0.98410 1.21347 1.00859 0.95552 0.92494 0.90114 1.21347 0.97672 0.96324 0.82714 1.45208 1.51778 1.38351 1.03759 1.16045 0.80094 0.82205 0.81425 1.90859 1.46404 1.28329 1.86424 1.47361 1.49059 1.34837 1.04936 1.21773 0.89054 0.88506 1.00909 1.21956 0.97707 1.01832 0.94848 1.20916 0.96036 0.97155 0.94377 1.19192 0.94207 0.93575 0.95035 1.22468 0.95361 1.52063 0.94311 0.92713 1.27363 0.93536 0.93450 1.09742 1.70921 1.17349 1.49077 1.20773 0.82971 0.75350 0.77870 0.70250 1.21293 1.19164 1.19688 1.21750 0.95964 0.97495 0.99586 1.21433 0.95863 1.00752 0.80559 0.91600 0.92175 0.93447 0.91407 0.91860 0.91685 0.91619 0.91563 0.91806 0.91705 0.91873 0.93360 0.92236 0.75400 0.89368 0.88090 0.89907 0.93353 0.91746 0.99281 1.00363 0.93690 0.94592 0.91541 0.90168 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.15 71.98 0.59 -1.23 16 2 C -0.08 -0.95 2.72 -10.79 -0.03 -0.98 16 3 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 4 C -0.11 -1.04 5.45 30.59 0.17 -0.88 16 5 C -0.12 -1.07 5.65 30.59 0.17 -0.89 16 6 C -0.12 -1.08 5.92 30.60 0.18 -0.89 16 7 C -0.11 -1.26 4.80 30.60 0.15 -1.11 16 8 C -0.08 -1.06 2.00 -10.79 -0.02 -1.08 16 9 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 10 C 0.14 2.74 4.56 86.38 0.39 3.14 16 11 N -0.73 -15.62 5.19 -478.52 -2.48 -18.10 16 12 C 0.70 21.22 8.29 179.06 1.49 22.71 16 13 O -0.64 -24.79 15.77 -4.01 -0.06 -24.85 16 14 N -0.63 -17.84 2.97 -836.88 -2.49 -20.32 16 15 C 0.12 2.69 6.38 86.36 0.55 3.24 16 16 C -0.13 -3.74 5.36 30.67 0.16 -3.58 16 17 C -0.07 -2.56 2.10 -10.77 -0.02 -2.58 16 18 C 0.02 0.86 3.76 29.85 0.11 0.97 16 19 C -0.60 -33.92 8.39 25.60 0.21 -33.71 16 20 H 0.05 2.96 7.06 -2.91 -0.02 2.94 16 21 C -0.04 -2.57 5.46 84.65 0.46 -2.11 16 22 N -0.94 -59.18 13.65 21.45 0.29 -58.89 16 23 Si 1.11 50.66 29.90 68.60 2.05 52.71 16 24 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 26 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 27 C -0.11 -4.16 5.19 30.67 0.16 -4.00 16 28 C 0.14 4.36 6.44 86.36 0.56 4.92 16 29 H 0.07 0.73 4.81 -2.39 -0.01 0.71 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.67 6.54 -2.38 -0.02 0.66 16 32 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 34 H 0.06 0.59 6.43 -2.39 -0.02 0.57 16 35 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.06 0.78 6.43 -2.39 -0.02 0.77 16 39 H 0.06 0.68 7.18 -2.39 -0.02 0.66 16 40 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.06 1.25 6.71 -2.39 -0.02 1.23 16 42 H 0.41 6.43 5.15 -92.71 -0.48 5.96 16 43 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 44 H 0.10 1.59 5.65 -2.39 -0.01 1.58 16 45 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.06 2.44 8.14 -2.39 -0.02 2.43 16 48 H -0.01 -0.60 8.01 -2.39 -0.02 -0.62 16 49 H -0.02 -1.23 8.01 -2.39 -0.02 -1.25 16 50 H 0.25 16.12 7.22 -92.71 -0.67 15.45 16 51 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 52 H 0.07 2.73 6.91 -2.39 -0.02 2.72 16 53 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 54 H 0.08 2.62 7.00 -2.38 -0.02 2.60 16 Total: -1.00 -72.48 394.67 3.08 -69.40 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.49 Total: 18.12 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: 5.28 Total: -18.07 kcal Atomic # 7 Polarization: -92.64 SS G_CDS: -4.68 Total: -97.31 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.06 Total: -24.85 kcal Atomic # 14 Polarization: 50.66 SS G_CDS: 2.05 Total: 52.71 kcal Total: -72.48 3.08 -69.40 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566149553.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.297 kcal (2) G-P(sol) polarization free energy of solvation -72.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds