Wall clock time and date at job start Tue Mar 31 2020 15:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46924 * 2 1 4 4 C 1.53003 * 109.46943 * 240.00760 * 2 1 3 5 5 C 1.53005 * 109.46835 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.47250 * 59.99807 * 5 4 2 7 7 C 1.53003 * 109.46985 * 299.99869 * 6 5 4 8 8 C 1.52999 * 109.47356 * 120.00435 * 2 1 3 9 9 H 1.08997 * 109.46772 * 60.00180 * 8 2 1 10 10 C 1.52993 * 109.46980 * 300.00067 * 8 2 1 11 11 N 1.46500 * 109.47125 * 174.99852 * 10 8 2 12 12 C 1.34776 * 120.00226 * 179.97438 * 11 10 8 13 13 O 1.21589 * 119.99855 * 355.01925 * 12 11 10 14 14 N 1.34777 * 119.99879 * 175.01655 * 12 11 10 15 15 C 1.46925 * 120.63198 * 4.94466 * 14 12 11 16 16 C 1.53620 * 108.54421 * 126.37058 * 15 14 12 17 17 C 1.53039 * 109.24259 * 54.85221 * 16 15 14 18 18 C 1.53000 * 109.45093 * 178.49924 * 17 16 15 19 19 C 1.50701 * 109.47296 * 295.06488 * 18 17 16 20 20 H 1.08004 * 119.99966 * 0.02562 * 19 18 17 21 21 C 1.37874 * 120.00125 * 179.97438 * 19 18 17 22 22 N 1.31506 * 120.00164 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99987 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47089 * 59.99990 * 23 21 19 25 25 H 1.48494 * 109.47003 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.46908 * 300.00478 * 23 21 19 27 27 C 1.53043 * 109.54229 * 298.51591 * 17 16 15 28 28 C 1.46931 * 120.62758 * 185.22775 * 14 12 11 29 29 H 1.09010 * 109.46989 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47410 * 299.98924 * 1 2 3 31 31 H 1.08999 * 109.47319 * 59.99852 * 1 2 3 32 32 H 1.09002 * 109.47186 * 299.99391 * 4 2 1 33 33 H 1.08999 * 109.47615 * 60.00125 * 4 2 1 34 34 H 1.08999 * 109.46845 * 180.02562 * 5 4 2 35 35 H 1.09002 * 109.46896 * 299.99764 * 5 4 2 36 36 H 1.08997 * 109.46772 * 59.99983 * 6 5 4 37 37 H 1.09001 * 109.47014 * 179.97438 * 6 5 4 38 38 H 1.08996 * 109.46745 * 180.02562 * 7 6 5 39 39 H 1.08999 * 109.46880 * 300.00181 * 7 6 5 40 40 H 1.08999 * 109.47400 * 295.00154 * 10 8 2 41 41 H 1.08999 * 109.47293 * 54.99975 * 10 8 2 42 42 H 0.97004 * 119.99660 * 0.02562 * 11 10 8 43 43 H 1.08999 * 109.58468 * 246.20305 * 15 14 12 44 44 H 1.09000 * 109.58427 * 6.62392 * 15 14 12 45 45 H 1.09007 * 109.63253 * 294.87051 * 16 15 14 46 46 H 1.08998 * 109.43712 * 174.72323 * 16 15 14 47 47 H 1.08998 * 109.45877 * 58.53530 * 17 16 15 48 48 H 1.08999 * 109.47374 * 55.06415 * 18 17 16 49 49 H 1.09006 * 109.47298 * 175.06568 * 18 17 16 50 50 H 0.97004 * 120.00021 * 179.97438 * 22 21 19 51 51 H 1.09003 * 109.49419 * 301.40928 * 27 17 16 52 52 H 1.09002 * 109.49558 * 181.31595 * 27 17 16 53 53 H 1.09000 * 109.58545 * 353.37229 * 28 14 12 54 54 H 1.08999 * 109.58789 * 113.65884 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5700 -0.7205 -1.2497 6 6 4.0805 -1.4415 -0.0005 7 6 3.5705 -0.7203 1.2488 8 6 2.0400 -0.7213 1.2492 9 1 1.6767 -1.7490 1.2490 10 6 1.5300 -0.0002 2.4984 11 7 1.9176 -0.7569 3.6915 12 6 1.5745 -0.3081 4.9151 13 8 1.0233 0.7690 5.0350 14 7 1.8425 -1.0532 6.0058 15 6 2.6032 -2.3047 5.8889 16 6 3.7903 -2.2476 6.8623 17 6 3.2725 -1.9565 8.2727 18 6 4.4474 -1.9356 9.2525 19 6 5.0632 -3.3090 9.3278 20 1 4.6575 -4.1159 8.7356 21 6 6.1453 -3.5351 10.1518 22 7 6.6397 -2.5525 10.8725 23 14 6.9091 -5.2373 10.2445 24 1 7.3934 -5.6365 8.8987 25 1 8.0493 -5.2171 11.1956 26 1 5.8912 -6.2117 10.7133 27 6 2.5702 -0.5968 8.2897 28 6 1.3741 -0.6324 7.3333 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.6767 -1.7488 -1.2495 33 1 1.6767 -0.2072 -2.1393 34 1 3.9333 -1.2338 -2.1400 35 1 3.9329 0.3073 -1.2498 36 1 3.7176 -2.4693 -0.0004 37 1 5.1705 -1.4415 -0.0010 38 1 3.9346 -1.2337 2.1387 39 1 3.9335 0.3074 1.2486 40 1 1.9646 0.9984 2.5444 41 1 0.4437 0.0780 2.4548 42 1 2.4219 -1.5806 3.6008 43 1 1.9603 -3.1479 6.1415 44 1 2.9703 -2.4152 4.8686 45 1 4.4768 -1.4580 6.5567 46 1 4.3106 -3.2053 6.8563 47 1 2.5671 -2.7332 8.5681 48 1 5.1948 -1.2207 8.9085 49 1 4.0916 -1.6423 10.2403 50 1 7.4007 -2.7117 11.4525 51 1 3.2683 0.1772 7.9706 52 1 2.2223 -0.3797 9.2996 53 1 0.9301 0.3609 7.2663 54 1 0.6312 -1.3407 7.7002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566149557.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:16 Heat of formation + Delta-G solvation = -90.504757 kcal Electronic energy + Delta-G solvation = -28257.460302 eV Core-core repulsion = 24612.400227 eV Total energy + Delta-G solvation = -3645.060074 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.52267 -40.08602 -38.75225 -35.91229 -35.66024 -34.02513 -33.56166 -32.29388 -31.50286 -29.76068 -27.77948 -26.58680 -25.82335 -24.18874 -23.56865 -22.56437 -21.89909 -21.42216 -20.81566 -20.25278 -19.03938 -18.38334 -17.35291 -16.74704 -16.52198 -16.03722 -15.76102 -15.58403 -15.25499 -15.20621 -15.14968 -14.89452 -14.68968 -14.46984 -14.29702 -14.16851 -13.79846 -13.55008 -13.31485 -12.99441 -12.94795 -12.78496 -12.75563 -12.66390 -12.47125 -12.37347 -12.31985 -12.15168 -11.91149 -11.76043 -11.72930 -11.41389 -11.30577 -11.24776 -11.00266 -10.89490 -10.83936 -10.83020 -10.50277 -10.16682 -9.41484 -8.14681 -6.24531 1.42690 1.45163 1.52588 1.68779 2.13194 2.44077 2.93308 3.18981 3.64605 3.74843 3.79818 3.93229 4.01992 4.08802 4.14445 4.21527 4.27090 4.36196 4.42108 4.47962 4.52887 4.54267 4.60237 4.63013 4.68092 4.73500 4.80904 4.85333 4.88650 4.91446 4.96677 4.98295 5.09038 5.09852 5.13595 5.23056 5.27897 5.32636 5.33781 5.34960 5.38631 5.39833 5.44371 5.48637 5.55187 5.56680 5.61511 5.66120 5.82888 5.90978 6.00275 6.30348 6.92374 6.96422 7.44292 7.55315 8.97176 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.015584 B = 0.002584 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.246420 B =10831.803952 C =12188.797150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.081 4.081 3 H 0.066 0.934 4 C -0.109 4.109 5 C -0.121 4.121 6 C -0.118 4.118 7 C -0.116 4.116 8 C -0.082 4.082 9 H 0.086 0.914 10 C 0.142 3.858 11 N -0.734 5.734 12 C 0.701 3.299 13 O -0.638 6.638 14 N -0.625 5.625 15 C 0.119 3.881 16 C -0.112 4.112 17 C -0.072 4.072 18 C 0.032 3.968 19 C -0.526 4.526 20 H 0.069 0.931 21 C -0.005 4.005 22 N -0.939 5.939 23 Si 0.961 3.039 24 H -0.264 1.264 25 H -0.291 1.291 26 H -0.266 1.266 27 C -0.122 4.122 28 C 0.137 3.863 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.047 0.953 41 H 0.063 0.937 42 H 0.406 0.594 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.041 0.959 46 H 0.077 0.923 47 H 0.066 0.934 48 H -0.018 1.018 49 H -0.015 1.015 50 H 0.260 0.740 51 H 0.041 0.959 52 H 0.071 0.929 53 H 0.078 0.922 54 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.844 0.162 -25.869 28.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.100 4.100 3 H 0.085 0.915 4 C -0.146 4.146 5 C -0.158 4.158 6 C -0.155 4.155 7 C -0.154 4.154 8 C -0.100 4.100 9 H 0.105 0.895 10 C 0.018 3.982 11 N -0.393 5.393 12 C 0.403 3.597 13 O -0.520 6.520 14 N -0.362 5.362 15 C -0.004 4.004 16 C -0.151 4.151 17 C -0.090 4.090 18 C -0.005 4.005 19 C -0.564 4.564 20 H 0.087 0.913 21 C -0.202 4.202 22 N -0.580 5.580 23 Si 0.786 3.214 24 H -0.189 1.189 25 H -0.216 1.216 26 H -0.191 1.191 27 C -0.160 4.160 28 C 0.014 3.986 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.245 0.755 43 H 0.105 0.895 44 H 0.114 0.886 45 H 0.060 0.940 46 H 0.096 0.904 47 H 0.084 0.916 48 H 0.000 1.000 49 H 0.004 0.996 50 H 0.069 0.931 51 H 0.060 0.940 52 H 0.090 0.910 53 H 0.096 0.904 54 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.126 0.960 -25.691 28.013 hybrid contribution 1.171 -0.610 0.861 1.576 sum -9.955 0.350 -24.830 26.753 Atomic orbital electron populations 1.21921 0.94854 1.02243 1.01875 1.21053 0.95709 0.99406 0.93792 0.91505 1.21556 0.95281 1.00863 0.96916 1.21552 0.95795 1.00631 0.97838 1.21518 1.00332 0.99569 0.94089 1.21612 0.94490 1.00865 0.98417 1.21372 0.95744 1.00285 0.92646 0.89529 1.21375 0.99623 0.94556 0.82658 1.45234 1.60882 1.29255 1.03887 1.16034 0.79223 0.83075 0.81402 1.90849 1.51732 1.23297 1.86154 1.47379 1.57786 1.24715 1.06305 1.21898 0.92743 0.85575 1.00143 1.21853 0.96869 1.02076 0.94267 1.21021 0.96788 0.95830 0.95387 1.19022 0.92804 0.95459 0.93196 1.21643 1.13762 0.96678 1.24292 0.91278 1.25992 0.97881 1.00876 0.95451 1.70113 1.25400 1.33962 1.28485 0.85561 0.77828 0.79772 0.78256 1.18857 1.21646 1.19125 1.21925 0.97122 0.97656 0.99342 1.21428 0.95602 1.01234 0.80342 0.92164 0.93119 0.91906 0.91467 0.91261 0.91343 0.92430 0.91369 0.92020 0.92212 0.92643 0.93473 0.91833 0.75482 0.89470 0.88627 0.93982 0.90425 0.91603 0.99984 0.99637 0.93099 0.93986 0.90993 0.90380 0.89971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.85 71.98 0.64 -1.13 16 2 C -0.08 -0.96 2.25 -10.79 -0.02 -0.99 16 3 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 4 C -0.11 -1.07 5.20 30.60 0.16 -0.91 16 5 C -0.12 -1.27 5.92 30.60 0.18 -1.09 16 6 C -0.12 -1.37 5.92 30.60 0.18 -1.19 16 7 C -0.12 -1.63 5.08 30.61 0.16 -1.48 16 8 C -0.08 -1.10 1.76 -10.78 -0.02 -1.12 16 9 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 10 C 0.14 2.79 4.85 86.38 0.42 3.21 16 11 N -0.73 -16.29 5.19 -478.55 -2.49 -18.77 16 12 C 0.70 21.33 8.30 179.05 1.49 22.81 16 13 O -0.64 -24.46 15.77 -4.00 -0.06 -24.52 16 14 N -0.63 -17.88 2.97 -836.07 -2.48 -20.36 16 15 C 0.12 2.89 6.42 86.51 0.56 3.44 16 16 C -0.11 -3.72 5.21 30.82 0.16 -3.56 16 17 C -0.07 -2.76 2.10 -10.77 -0.02 -2.78 16 18 C 0.03 1.66 4.45 29.85 0.13 1.79 16 19 C -0.53 -28.46 8.39 25.60 0.21 -28.25 16 20 H 0.07 3.47 7.06 -2.91 -0.02 3.45 16 21 C -0.01 -0.28 5.46 84.66 0.46 0.18 16 22 N -0.94 -57.16 13.29 21.44 0.28 -56.88 16 23 Si 0.96 43.17 29.54 68.60 2.03 45.19 16 24 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 25 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 27 C -0.12 -4.23 5.36 30.67 0.16 -4.07 16 28 C 0.14 4.09 6.44 86.36 0.56 4.65 16 29 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.05 0.70 6.32 -2.39 -0.02 0.69 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.06 0.88 7.18 -2.39 -0.02 0.87 16 39 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.06 1.33 6.17 -2.39 -0.01 1.31 16 42 H 0.41 7.06 5.14 -92.70 -0.48 6.58 16 43 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.10 1.76 5.64 -2.39 -0.01 1.74 16 45 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 46 H 0.08 2.67 6.91 -2.39 -0.02 2.65 16 47 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 48 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 49 H -0.01 -0.84 8.14 -2.38 -0.02 -0.86 16 50 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 51 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 52 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 53 H 0.08 2.49 7.00 -2.39 -0.02 2.48 16 54 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -69.49 402.58 3.05 -66.44 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.37 Total: 19.37 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: 5.40 Total: -10.48 kcal Atomic # 7 Polarization: -91.33 SS G_CDS: -4.68 Total: -96.01 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.06 Total: -24.52 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -69.49 3.05 -66.44 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566149557.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.065 kcal (2) G-P(sol) polarization free energy of solvation -69.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds