Wall clock time and date at job start Tue Mar 31 2020 15:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.45390 * 2 1 4 4 C 1.53042 * 109.45690 * 119.96930 * 2 1 3 5 5 C 1.53117 * 109.27547 * 179.19501 * 4 2 1 6 6 C 1.53120 * 109.16183 * 302.34402 * 5 4 2 7 7 C 1.53042 * 109.27719 * 57.65665 * 6 5 4 8 8 N 1.46840 * 109.46516 * 240.01999 * 2 1 3 9 9 C 1.46906 * 111.00069 * 54.14877 * 8 2 1 10 10 C 1.52989 * 109.47370 * 192.13230 * 9 8 2 11 11 C 1.50701 * 109.47419 * 179.97438 * 10 9 8 12 12 O 1.21290 * 119.99599 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00481 * 179.72802 * 11 10 9 14 14 C 1.46921 * 120.62640 * 359.97438 * 13 11 10 15 15 C 1.53627 * 108.54248 * 126.37147 * 14 13 11 16 16 C 1.53044 * 109.23992 * 54.85537 * 15 14 13 17 17 C 1.52997 * 109.45997 * 178.49075 * 16 15 14 18 18 C 1.50696 * 109.47145 * 295.06721 * 17 16 15 19 19 H 1.07998 * 120.00233 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00102 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00212 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00231 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46906 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47309 * 119.99992 * 22 20 18 25 25 H 1.48498 * 109.47188 * 240.00166 * 22 20 18 26 26 C 1.53043 * 109.53673 * 298.51438 * 16 15 14 27 27 C 1.46927 * 120.63035 * 180.27821 * 13 11 10 28 28 H 1.08992 * 109.47338 * 172.03948 * 1 2 3 29 29 H 1.08998 * 109.47257 * 292.04608 * 1 2 3 30 30 H 1.09002 * 109.46858 * 52.04408 * 1 2 3 31 31 H 1.08996 * 109.50515 * 59.25702 * 4 2 1 32 32 H 1.08999 * 109.53944 * 299.15315 * 4 2 1 33 33 H 1.08998 * 109.52307 * 182.44266 * 5 4 2 34 34 H 1.09000 * 109.52511 * 62.24913 * 5 4 2 35 35 H 1.08995 * 109.50589 * 297.71937 * 6 5 4 36 36 H 1.09006 * 109.53443 * 177.61257 * 6 5 4 37 37 H 1.08998 * 109.46081 * 180.80643 * 7 6 5 38 38 H 1.09004 * 109.46427 * 60.83413 * 7 6 5 39 39 H 1.09000 * 109.46809 * 72.12523 * 9 8 2 40 40 H 1.09001 * 109.46629 * 312.13489 * 9 8 2 41 41 H 1.09004 * 109.47344 * 60.00486 * 10 9 8 42 42 H 1.09001 * 109.47456 * 299.99753 * 10 9 8 43 43 H 1.09002 * 109.58943 * 246.20562 * 14 13 11 44 44 H 1.09002 * 109.59026 * 6.63132 * 14 13 11 45 45 H 1.08991 * 109.63726 * 294.86610 * 15 14 13 46 46 H 1.09001 * 109.42928 * 174.71940 * 15 14 13 47 47 H 1.09006 * 109.45931 * 58.52818 * 16 15 14 48 48 H 1.09000 * 109.47104 * 55.06768 * 17 16 15 49 49 H 1.09001 * 109.46983 * 175.07130 * 17 16 15 50 50 H 0.96996 * 120.00339 * 179.97438 * 21 20 18 51 51 H 1.09001 * 109.49214 * 301.40748 * 26 16 15 52 52 H 1.09000 * 109.49607 * 181.31617 * 26 16 15 53 53 H 1.09002 * 109.58794 * 353.36666 * 27 13 11 54 54 H 1.08999 * 109.58435 * 113.79694 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0398 -0.7208 1.2501 5 6 3.5708 -0.7360 1.2358 6 6 4.0547 -1.4189 -0.0464 7 6 3.4865 -0.6778 -1.2589 8 7 2.0193 -0.6918 -1.1992 9 6 1.4374 -0.1107 -2.4165 10 6 1.7215 -1.0294 -3.6064 11 6 1.1240 -0.4337 -4.8551 12 8 0.5291 0.6218 -4.7986 13 7 1.2551 -1.0711 -6.0353 14 6 1.9781 -2.3472 -6.1206 15 6 1.0651 -3.3818 -6.7962 16 6 0.5953 -2.8346 -8.1460 17 6 -0.2841 -3.8765 -8.8402 18 6 0.5422 -5.0935 -9.1674 19 1 1.5897 -5.1213 -8.9060 20 6 -0.0391 -6.1716 -9.8005 21 7 -1.3148 -6.1381 -10.1184 22 14 0.9850 -7.6805 -10.2055 23 1 2.3813 -7.4688 -9.7462 24 1 0.4121 -8.8663 -9.5195 25 1 0.9760 -7.9054 -11.6733 26 6 -0.2106 -1.5523 -7.9259 27 6 0.6833 -0.4996 -7.2623 28 1 -0.3633 -1.0177 -0.1423 29 1 -0.3634 0.3857 0.9525 30 1 -0.3633 0.6321 -0.8103 31 1 1.6658 -1.7446 1.2578 32 1 1.6894 -0.1987 2.1404 33 1 3.9377 -1.2863 2.1022 34 1 3.9456 0.2870 1.2673 35 1 3.7123 -2.4536 -0.0592 36 1 5.1439 -1.3954 -0.0832 37 1 3.8175 -1.1701 -2.1733 38 1 3.8404 0.3532 -1.2531 39 1 1.8804 0.8683 -2.5994 40 1 0.3602 -0.0039 -2.2890 41 1 1.2784 -2.0084 -3.4235 42 1 2.7988 -1.1363 -3.7340 43 1 2.8847 -2.2149 -6.7111 44 1 2.2388 -2.6872 -5.1183 45 1 0.2006 -3.5769 -6.1619 46 1 1.6192 -4.3075 -6.9518 47 1 1.4614 -2.6163 -8.7708 48 1 -1.1025 -4.1602 -8.1784 49 1 -0.6899 -3.4549 -9.7598 50 1 -1.7236 -6.8964 -10.5641 51 1 -1.0633 -1.7647 -7.2809 52 1 -0.5647 -1.1759 -8.8856 53 1 0.0894 0.3799 -7.0135 54 1 1.4866 -0.2199 -7.9439 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569489982.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:39 Heat of formation + Delta-G solvation = -81.472313 kcal Electronic energy + Delta-G solvation = -28149.455780 eV Core-core repulsion = 24504.787382 eV Total energy + Delta-G solvation = -3644.668398 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.31909 -40.19173 -38.69620 -35.68216 -35.22195 -34.02234 -33.54208 -32.30974 -30.94415 -29.71476 -27.97481 -26.60848 -25.58608 -24.15505 -23.75992 -22.78420 -22.09937 -21.07720 -20.57031 -19.76008 -18.42152 -18.23420 -17.03539 -16.86996 -16.53624 -16.33927 -16.16337 -15.45285 -15.24857 -15.20843 -15.02431 -14.98049 -14.60740 -14.48109 -14.29345 -13.94164 -13.80847 -13.61830 -13.34623 -13.12569 -13.00193 -12.85552 -12.75167 -12.70659 -12.65464 -12.51327 -12.29462 -12.11051 -12.06887 -11.87220 -11.72354 -11.54780 -11.35107 -11.15926 -11.11360 -11.05436 -10.83129 -10.73405 -10.51560 -9.59158 -9.28581 -8.15177 -6.24725 1.42330 1.43238 1.55480 1.61859 2.00975 2.44006 2.87872 3.18808 3.64445 3.80971 3.86698 3.93387 3.96669 4.04633 4.07112 4.13172 4.20135 4.23346 4.27904 4.41870 4.44221 4.45644 4.51541 4.60119 4.63279 4.68921 4.70423 4.81396 4.83728 4.87826 4.90237 4.92081 4.97833 5.01844 5.03943 5.11021 5.12552 5.15174 5.26667 5.28539 5.32484 5.34227 5.35828 5.42451 5.53712 5.56044 5.61952 5.83342 5.90959 6.11724 6.20831 6.30011 6.46276 6.92635 7.16239 7.44232 8.97100 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.016541 B = 0.002422 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.354568 B =11559.343705 C =12432.420501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.080 3.920 3 H 0.032 0.968 4 C -0.108 4.108 5 C -0.122 4.122 6 C -0.114 4.114 7 C 0.047 3.953 8 N -0.536 5.536 9 C 0.074 3.926 10 C -0.126 4.126 11 C 0.512 3.488 12 O -0.590 6.590 13 N -0.608 5.608 14 C 0.112 3.888 15 C -0.114 4.114 16 C -0.073 4.073 17 C 0.032 3.968 18 C -0.523 4.523 19 H 0.069 0.931 20 C -0.006 4.006 21 N -0.939 5.939 22 Si 0.961 3.039 23 H -0.255 1.255 24 H -0.283 1.283 25 H -0.284 1.284 26 C -0.121 4.121 27 C 0.118 3.882 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.027 0.973 39 H 0.026 0.974 40 H 0.074 0.926 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.086 0.914 44 H 0.110 0.890 45 H 0.045 0.955 46 H 0.077 0.923 47 H 0.063 0.937 48 H -0.017 1.017 49 H -0.016 1.016 50 H 0.260 0.740 51 H 0.044 0.956 52 H 0.069 0.931 53 H 0.078 0.922 54 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.230 11.497 22.157 27.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 H 0.050 0.950 4 C -0.146 4.146 5 C -0.159 4.159 6 C -0.152 4.152 7 C -0.080 4.080 8 N -0.262 5.262 9 C -0.054 4.054 10 C -0.165 4.165 11 C 0.302 3.698 12 O -0.472 6.472 13 N -0.340 5.340 14 C -0.010 4.010 15 C -0.152 4.152 16 C -0.092 4.092 17 C -0.005 4.005 18 C -0.561 4.561 19 H 0.087 0.913 20 C -0.203 4.203 21 N -0.580 5.580 22 Si 0.786 3.214 23 H -0.179 1.179 24 H -0.209 1.209 25 H -0.210 1.210 26 C -0.160 4.160 27 C -0.004 4.004 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.045 0.955 39 H 0.044 0.956 40 H 0.092 0.908 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.104 0.896 44 H 0.129 0.871 45 H 0.064 0.936 46 H 0.095 0.905 47 H 0.082 0.918 48 H 0.002 0.998 49 H 0.003 0.997 50 H 0.069 0.931 51 H 0.063 0.937 52 H 0.088 0.912 53 H 0.096 0.904 54 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 11.657 11.462 22.147 27.527 hybrid contribution -0.179 -0.059 -0.990 1.008 sum 11.478 11.403 21.157 26.635 Atomic orbital electron populations 1.21923 0.94311 1.02287 1.02047 1.21646 0.95473 0.95127 0.90537 0.94991 1.21618 0.95888 1.01140 0.95924 1.21598 0.95382 1.00731 0.98219 1.21579 1.00332 0.99862 0.93423 1.22249 0.86679 0.98940 1.00136 1.61971 1.07732 1.55019 1.01437 1.21723 1.00456 0.94620 0.88597 1.21615 1.03440 1.01262 0.90212 1.21166 0.79137 0.84103 0.85434 1.90647 1.45079 1.24817 1.86631 1.48282 1.54749 1.23396 1.07585 1.22078 0.94361 0.81396 1.03188 1.21865 0.99282 0.98606 0.95471 1.21043 0.97887 0.93782 0.96480 1.19029 0.94364 0.93577 0.93578 1.21696 0.96734 1.00767 1.36925 0.91287 1.25992 0.96002 1.02231 0.96034 1.70123 1.12899 1.32167 1.42807 0.85456 0.79474 0.78877 0.77599 1.17871 1.20882 1.21029 1.21909 0.98051 0.95783 1.00237 1.21536 0.97357 0.95990 0.85527 0.92099 0.90781 0.93494 0.91442 0.90574 0.90749 0.92416 0.91344 0.90375 0.89803 0.95464 0.95599 0.90797 0.87092 0.86761 0.89619 0.87144 0.93606 0.90484 0.91828 0.99829 0.99739 0.93105 0.93729 0.91249 0.90366 0.90127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 8.52 71.98 0.61 -1.81 16 2 C 0.08 1.31 2.44 44.94 0.11 1.42 16 3 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 4 C -0.11 -1.40 5.37 30.65 0.16 -1.23 16 5 C -0.12 -1.39 6.00 30.67 0.18 -1.20 16 6 C -0.11 -1.38 6.09 30.65 0.19 -1.19 16 7 C 0.05 0.70 5.30 86.33 0.46 1.16 16 8 N -0.54 -9.48 4.48 -871.12 -3.90 -13.38 16 9 C 0.07 1.57 4.00 86.30 0.35 1.91 16 10 C -0.13 -2.49 4.02 29.84 0.12 -2.37 16 11 C 0.51 14.06 7.70 87.66 0.67 14.74 16 12 O -0.59 -20.51 15.40 -3.06 -0.05 -20.56 16 13 N -0.61 -16.35 2.97 -818.00 -2.43 -18.78 16 14 C 0.11 2.60 6.37 86.51 0.55 3.15 16 15 C -0.11 -3.70 5.21 30.82 0.16 -3.54 16 16 C -0.07 -2.79 2.10 -10.77 -0.02 -2.81 16 17 C 0.03 1.61 4.45 29.85 0.13 1.75 16 18 C -0.52 -28.25 8.39 25.60 0.21 -28.03 16 19 H 0.07 3.48 7.05 -2.91 -0.02 3.46 16 20 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 21 N -0.94 -57.02 13.29 21.45 0.28 -56.73 16 22 Si 0.96 43.19 29.54 68.60 2.03 45.22 16 23 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 25 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 26 C -0.12 -4.13 5.36 30.68 0.16 -3.97 16 27 C 0.12 3.42 6.43 86.37 0.56 3.98 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.07 0.97 8.13 -2.39 -0.02 0.95 16 30 H 0.05 0.87 6.55 -2.39 -0.02 0.86 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 37 H 0.08 1.11 6.31 -2.39 -0.02 1.09 16 38 H 0.03 0.43 8.14 -2.38 -0.02 0.41 16 39 H 0.03 0.61 8.06 -2.39 -0.02 0.59 16 40 H 0.07 1.78 5.69 -2.39 -0.01 1.76 16 41 H 0.11 2.08 7.71 -2.38 -0.02 2.06 16 42 H 0.11 1.73 6.29 -2.39 -0.02 1.72 16 43 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.11 1.93 5.94 -2.39 -0.01 1.91 16 45 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.08 2.63 6.91 -2.39 -0.02 2.61 16 47 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 48 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 49 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 50 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 51 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 52 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 53 H 0.08 2.40 7.01 -2.39 -0.02 2.38 16 54 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -67.77 402.55 1.85 -65.92 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.84 Total: 16.23 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: 5.07 Total: -17.92 kcal Atomic # 7 Polarization: -82.85 SS G_CDS: -6.04 Total: -88.89 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.05 Total: -20.56 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -67.77 1.85 -65.92 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569489982.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.554 kcal (2) G-P(sol) polarization free energy of solvation -67.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds