Wall clock time and date at job start Tue Mar 31 2020 15:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.45756 * 2 1 4 4 C 1.53032 * 109.45723 * 240.03336 * 2 1 3 5 5 C 1.53129 * 109.27331 * 180.80217 * 4 2 1 6 6 C 1.53118 * 109.15931 * 57.65409 * 5 4 2 7 7 C 1.53033 * 109.28050 * 302.34508 * 6 5 4 8 8 N 1.46848 * 109.46207 * 119.97938 * 2 1 3 9 9 C 1.46902 * 110.99816 * 305.85340 * 8 2 1 10 10 C 1.53003 * 109.46654 * 165.48996 * 9 8 2 11 11 C 1.50702 * 109.47012 * 179.97438 * 10 9 8 12 12 O 1.21281 * 119.99750 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00226 * 179.97438 * 11 10 9 14 14 C 1.46917 * 120.63247 * 179.97438 * 13 11 10 15 15 C 1.53191 * 108.77390 * 126.41227 * 14 13 11 16 16 C 1.53038 * 109.31184 * 54.63655 * 15 14 13 17 17 C 1.53004 * 109.46163 * 178.62343 * 16 15 14 18 18 C 1.50698 * 109.47478 * 185.02579 * 17 16 15 19 19 H 1.08001 * 119.99724 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00133 * 180.02562 * 18 17 16 21 21 N 1.31510 * 119.99933 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 120.00072 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47086 * 90.00434 * 22 20 18 24 24 H 1.48498 * 109.47410 * 210.00349 * 22 20 18 25 25 H 1.48507 * 109.47236 * 330.00329 * 22 20 18 26 26 C 1.53034 * 109.52972 * 298.63939 * 16 15 14 27 27 C 1.46925 * 120.62538 * 0.02562 * 13 11 10 28 28 H 1.09006 * 109.47330 * 307.31341 * 1 2 3 29 29 H 1.08992 * 109.47477 * 67.31505 * 1 2 3 30 30 H 1.09003 * 109.47392 * 187.32049 * 1 2 3 31 31 H 1.09000 * 109.50425 * 300.73950 * 4 2 1 32 32 H 1.09001 * 109.50950 * 60.82567 * 4 2 1 33 33 H 1.09002 * 109.51814 * 177.55378 * 5 4 2 34 34 H 1.08997 * 109.52680 * 297.74706 * 5 4 2 35 35 H 1.09005 * 109.50171 * 62.28364 * 6 5 4 36 36 H 1.08996 * 109.50341 * 182.35969 * 6 5 4 37 37 H 1.08995 * 109.46193 * 299.16200 * 7 6 5 38 38 H 1.09001 * 109.46598 * 179.19219 * 7 6 5 39 39 H 1.08994 * 109.47251 * 45.49207 * 9 8 2 40 40 H 1.08995 * 109.47080 * 285.48681 * 9 8 2 41 41 H 1.08994 * 109.47119 * 60.00130 * 10 9 8 42 42 H 1.09000 * 109.47135 * 300.00131 * 10 9 8 43 43 H 1.09004 * 109.58766 * 6.62753 * 14 13 11 44 44 H 1.08993 * 109.58799 * 246.20356 * 14 13 11 45 45 H 1.08998 * 109.50179 * 294.67943 * 15 14 13 46 46 H 1.09006 * 109.52154 * 174.60343 * 15 14 13 47 47 H 1.08998 * 109.45942 * 58.65814 * 16 15 14 48 48 H 1.08997 * 109.47215 * 305.03446 * 17 16 15 49 49 H 1.09007 * 109.46840 * 65.02525 * 17 16 15 50 50 H 0.97009 * 120.00253 * 179.97438 * 21 20 18 51 51 H 1.08996 * 109.50111 * 181.31110 * 26 16 15 52 52 H 1.09000 * 109.49512 * 301.41051 * 26 16 15 53 53 H 1.09001 * 109.59228 * 353.36898 * 27 13 11 54 54 H 1.08996 * 109.58508 * 113.80384 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7207 -1.2500 5 6 3.5710 -0.7358 -1.2357 6 6 4.0548 -1.4187 0.0465 7 6 3.4865 -0.6778 1.2590 8 7 2.0193 -0.6919 1.1993 9 6 1.4373 -0.1107 2.4165 10 6 1.6699 -1.0580 3.5953 11 6 1.0734 -0.4616 4.8442 12 8 0.5167 0.6148 4.7960 13 7 1.1577 -1.1249 6.0145 14 6 0.5816 -0.5562 7.2405 15 6 -0.3623 -1.5877 7.8663 16 6 0.3927 -2.9020 8.0776 17 6 -0.5372 -3.9243 8.7341 18 6 0.2384 -5.1759 9.0548 19 1 1.2897 -5.2361 8.8147 20 6 -0.3940 -6.2442 9.6546 21 7 0.2831 -7.3362 9.9348 22 14 -2.2120 -6.1399 10.0704 23 1 -3.0120 -6.6319 8.9200 24 1 -2.4956 -6.9764 11.2642 25 1 -2.5740 -4.7286 10.3576 26 6 0.8701 -3.4406 6.7270 27 6 1.8285 -2.4300 6.0885 28 1 -0.3634 0.6230 0.8174 29 1 -0.3634 0.3963 -0.9481 30 1 -0.3634 -1.0193 0.1309 31 1 1.6659 -1.7446 -1.2577 32 1 1.6888 -0.1983 -2.1400 33 1 3.9378 -1.2861 -2.1022 34 1 3.9457 0.2872 -1.2673 35 1 3.7125 -2.4535 0.0592 36 1 5.1439 -1.3953 0.0826 37 1 3.8404 0.3531 1.2532 38 1 3.8175 -1.1701 2.1734 39 1 0.3667 0.0352 2.2735 40 1 1.9105 0.8492 2.6230 41 1 2.7405 -1.2039 3.7384 42 1 1.1967 -2.0180 3.3889 43 1 0.0244 0.3485 6.9969 44 1 1.3801 -0.3179 7.9430 45 1 -1.2088 -1.7573 7.2008 46 1 -0.7227 -1.2168 8.8259 47 1 1.2531 -2.7267 8.7234 48 1 -0.9470 -3.5052 9.6531 49 1 -1.3513 -4.1664 8.0508 50 1 -0.1617 -8.0878 10.3572 51 1 1.3876 -4.3883 6.8756 52 1 0.0121 -3.5927 6.0722 53 1 2.0941 -2.7619 5.0847 54 1 2.7284 -2.3442 6.6974 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569489983.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:43 Heat of formation + Delta-G solvation = -78.444235 kcal Electronic energy + Delta-G solvation = -28186.333138 eV Core-core repulsion = 24541.796047 eV Total energy + Delta-G solvation = -3644.537091 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.33039 -40.19925 -38.73315 -35.67184 -35.22251 -34.09493 -33.54858 -32.35314 -31.00934 -30.15416 -27.97996 -26.58717 -25.50891 -24.18332 -23.58652 -22.68016 -22.07417 -21.07322 -20.57918 -19.79132 -18.84394 -18.23268 -17.04476 -16.87397 -16.44009 -16.30901 -16.15678 -15.44450 -15.29114 -15.23473 -15.06104 -15.02847 -14.80089 -14.49177 -14.26987 -14.13073 -13.83385 -13.62542 -13.46325 -13.15618 -13.08674 -12.86375 -12.85226 -12.75456 -12.65993 -12.40754 -12.13475 -12.07215 -11.96463 -11.87457 -11.72311 -11.55503 -11.38615 -11.18884 -11.15683 -11.05614 -10.92222 -10.74499 -10.70334 -9.60738 -9.29133 -8.24730 -6.25880 1.35685 1.37848 1.48464 1.61331 2.00224 2.38083 2.87206 3.11036 3.63849 3.80929 3.86244 3.92264 3.95488 4.01451 4.05000 4.11353 4.19002 4.23082 4.27371 4.41086 4.43696 4.45333 4.50886 4.59288 4.62726 4.66027 4.70259 4.80510 4.82713 4.87332 4.88106 4.91306 4.95232 5.00921 5.03607 5.10286 5.11404 5.15130 5.17411 5.24702 5.26805 5.27998 5.34719 5.38301 5.43517 5.53116 5.62204 5.73793 5.75268 6.11580 6.20262 6.35129 6.44705 6.81580 7.15631 7.38005 8.91356 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.017991 B = 0.002409 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.989512 B =11621.776168 C =12126.812857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.080 3.920 3 H 0.032 0.968 4 C -0.108 4.108 5 C -0.122 4.122 6 C -0.115 4.115 7 C 0.048 3.952 8 N -0.537 5.537 9 C 0.074 3.926 10 C -0.126 4.126 11 C 0.513 3.487 12 O -0.588 6.588 13 N -0.607 5.607 14 C 0.115 3.885 15 C -0.122 4.122 16 C -0.070 4.070 17 C -0.008 4.008 18 C -0.513 4.513 19 H 0.044 0.956 20 C 0.004 3.996 21 N -0.951 5.951 22 Si 0.940 3.060 23 H -0.271 1.271 24 H -0.288 1.288 25 H -0.251 1.251 26 C -0.117 4.117 27 C 0.112 3.888 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.027 0.973 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.026 0.974 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.054 0.946 46 H 0.078 0.922 47 H 0.059 0.941 48 H 0.014 0.986 49 H 0.010 0.990 50 H 0.263 0.737 51 H 0.067 0.933 52 H 0.054 0.946 53 H 0.108 0.892 54 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.870 15.704 -21.665 27.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 H 0.050 0.950 4 C -0.146 4.146 5 C -0.159 4.159 6 C -0.152 4.152 7 C -0.079 4.079 8 N -0.262 5.262 9 C -0.054 4.054 10 C -0.166 4.166 11 C 0.303 3.697 12 O -0.470 6.470 13 N -0.340 5.340 14 C -0.007 4.007 15 C -0.160 4.160 16 C -0.088 4.088 17 C -0.045 4.045 18 C -0.551 4.551 19 H 0.062 0.938 20 C -0.192 4.192 21 N -0.592 5.592 22 Si 0.765 3.235 23 H -0.196 1.196 24 H -0.214 1.214 25 H -0.174 1.174 26 C -0.155 4.155 27 C -0.010 4.010 28 H 0.066 0.934 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.046 0.954 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.044 0.956 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.073 0.927 46 H 0.097 0.903 47 H 0.078 0.922 48 H 0.032 0.968 49 H 0.029 0.971 50 H 0.072 0.928 51 H 0.085 0.915 52 H 0.072 0.928 53 H 0.127 0.873 54 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.420 15.616 -21.648 27.238 hybrid contribution -0.568 0.242 0.889 1.082 sum 4.852 15.858 -20.759 26.570 Atomic orbital electron populations 1.21929 0.94213 1.02342 1.02069 1.21649 0.95539 0.95117 0.90490 0.94978 1.21621 0.95827 1.01152 0.95981 1.21598 0.95446 1.00719 0.98155 1.21577 1.00308 0.99864 0.93486 1.22229 0.86750 0.98904 1.00034 1.61960 1.07652 1.55068 1.01511 1.21739 1.00592 0.94489 0.88623 1.21607 1.03427 1.01125 0.90444 1.21112 0.78843 0.84392 0.85338 1.90644 1.46374 1.23592 1.86355 1.48269 1.56345 1.20981 1.08373 1.21565 0.97111 0.96461 0.85565 1.21938 0.98020 0.95084 1.01008 1.20921 0.97922 0.93683 0.96306 1.19589 0.95474 0.93978 0.95483 1.21450 0.96915 0.98754 1.38031 0.93782 1.25904 1.02624 0.95069 0.95615 1.70052 1.38438 1.05881 1.44862 0.85805 0.80621 0.79136 0.77951 1.19638 1.21356 1.17432 1.21799 0.99272 0.98453 0.95954 1.21935 0.94918 0.80912 1.03208 0.93362 0.90782 0.92064 0.91452 0.90533 0.90768 0.92396 0.91388 0.90453 0.95448 0.90016 0.90566 0.95562 0.87106 0.87112 0.90052 0.90467 0.92720 0.90331 0.92225 0.96760 0.97145 0.92771 0.91464 0.92751 0.87347 0.90247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 8.56 71.98 0.62 -1.72 16 2 C 0.08 1.29 2.44 44.94 0.11 1.40 16 3 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 4 C -0.11 -1.39 5.37 30.65 0.16 -1.23 16 5 C -0.12 -1.41 6.00 30.68 0.18 -1.22 16 6 C -0.11 -1.43 6.09 30.64 0.19 -1.24 16 7 C 0.05 0.73 5.30 86.32 0.46 1.19 16 8 N -0.54 -9.44 4.46 -871.13 -3.88 -13.33 16 9 C 0.07 1.52 4.04 86.30 0.35 1.87 16 10 C -0.13 -2.48 4.07 29.85 0.12 -2.36 16 11 C 0.51 13.66 7.70 87.66 0.67 14.33 16 12 O -0.59 -19.67 15.39 -3.03 -0.05 -19.72 16 13 N -0.61 -15.77 2.97 -818.88 -2.43 -18.21 16 14 C 0.12 3.10 6.43 86.36 0.56 3.66 16 15 C -0.12 -3.66 5.36 30.67 0.16 -3.50 16 16 C -0.07 -2.48 2.10 -10.77 -0.02 -2.51 16 17 C -0.01 -0.35 3.52 29.85 0.10 -0.25 16 18 C -0.51 -28.16 8.94 25.60 0.23 -27.93 16 19 H 0.04 2.61 7.30 -2.91 -0.02 2.59 16 20 C 0.00 0.25 5.47 84.65 0.46 0.71 16 21 N -0.95 -58.58 13.96 21.44 0.30 -58.28 16 22 Si 0.94 44.10 27.47 68.60 1.88 45.98 16 23 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 25 H -0.25 -11.01 6.54 99.48 0.65 -10.36 16 26 C -0.12 -3.74 5.19 30.68 0.16 -3.58 16 27 C 0.11 2.67 6.34 86.37 0.55 3.22 16 28 H 0.05 0.86 6.46 -2.38 -0.02 0.85 16 29 H 0.07 0.93 8.13 -2.39 -0.02 0.91 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.08 1.14 6.42 -2.39 -0.02 1.12 16 39 H 0.08 1.77 5.57 -2.39 -0.01 1.75 16 40 H 0.03 0.61 8.03 -2.39 -0.02 0.59 16 41 H 0.11 1.74 6.39 -2.39 -0.02 1.73 16 42 H 0.11 2.06 7.69 -2.39 -0.02 2.04 16 43 H 0.08 2.30 7.01 -2.39 -0.02 2.28 16 44 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 47 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 48 H 0.01 0.64 7.20 -2.39 -0.02 0.62 16 49 H 0.01 0.46 7.57 -2.38 -0.02 0.44 16 50 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 51 H 0.07 2.48 6.91 -2.39 -0.02 2.46 16 52 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 53 H 0.11 2.00 5.93 -2.39 -0.01 1.99 16 54 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -67.00 399.00 1.67 -65.33 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 0.78 Total: 17.38 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: 5.07 Total: -19.16 kcal Atomic # 7 Polarization: -83.79 SS G_CDS: -6.02 Total: -89.81 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.05 Total: -19.72 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.88 Total: 45.98 kcal Total: -67.00 1.67 -65.33 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569489983.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.112 kcal (2) G-P(sol) polarization free energy of solvation -67.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds