Wall clock time and date at job start Tue Mar 31 2020 15:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 108.87194 * 2 1 4 4 C 1.54235 * 108.89386 * 241.40040 * 2 1 3 5 5 C 1.50480 * 108.51798 * 159.25216 * 4 2 1 6 6 C 1.54062 * 112.49730 * 94.14742 * 5 4 2 7 7 C 1.54063 * 112.82210 * 318.28916 * 6 5 4 8 8 H 1.09000 * 108.87969 * 78.95840 * 7 6 5 9 9 N 1.46506 * 108.87652 * 197.50356 * 7 6 5 10 10 C 1.34773 * 120.00015 * 274.99802 * 9 7 6 11 11 O 1.21592 * 120.00115 * 355.01556 * 10 9 7 12 12 N 1.34771 * 119.99908 * 175.01827 * 10 9 7 13 13 C 1.46919 * 120.63284 * 4.94098 * 12 10 9 14 14 C 1.53622 * 108.54645 * 126.37260 * 13 12 10 15 15 C 1.53036 * 109.24360 * 54.85400 * 14 13 12 16 16 C 1.53000 * 109.46451 * 178.49269 * 15 14 13 17 17 C 1.50698 * 109.47089 * 295.07288 * 16 15 14 18 18 H 1.08001 * 119.99902 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99838 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00151 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99894 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47591 * 59.99415 * 21 19 17 23 23 H 1.48500 * 109.47102 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47001 * 299.99444 * 21 19 17 25 25 C 1.53040 * 109.54067 * 298.51725 * 15 14 13 26 26 C 1.46929 * 120.63153 * 185.22453 * 12 10 9 27 27 C 1.50474 * 112.49343 * 318.27800 * 7 6 5 28 28 C 1.45542 * 108.89789 * 118.50567 * 2 1 3 29 29 H 1.08999 * 109.46892 * 178.60385 * 1 2 3 30 30 H 1.09005 * 109.46859 * 298.60288 * 1 2 3 31 31 H 1.08995 * 109.47028 * 58.60133 * 1 2 3 32 32 H 1.09000 * 109.63176 * 39.54234 * 4 2 1 33 33 H 1.09000 * 109.62781 * 278.95341 * 4 2 1 34 34 H 1.08999 * 108.87408 * 333.37074 * 5 4 2 35 35 H 1.09005 * 108.79539 * 214.87551 * 5 4 2 36 36 H 1.09002 * 108.81150 * 197.42102 * 6 5 4 37 37 H 1.09007 * 108.80917 * 79.14695 * 6 5 4 38 38 H 0.97001 * 119.99933 * 94.72429 * 9 7 6 39 39 H 1.09008 * 109.59208 * 246.20519 * 13 12 10 40 40 H 1.09002 * 109.59015 * 6.63202 * 13 12 10 41 41 H 1.09007 * 109.63444 * 294.86614 * 14 13 12 42 42 H 1.08996 * 109.46037 * 174.74434 * 14 13 12 43 43 H 1.09004 * 109.44694 * 58.52974 * 15 14 13 44 44 H 1.09001 * 109.46699 * 55.07147 * 16 15 14 45 45 H 1.09000 * 109.47471 * 175.06790 * 16 15 14 46 46 H 0.96991 * 120.00004 * 180.02562 * 20 19 17 47 47 H 1.09007 * 109.49711 * 301.41278 * 25 15 14 48 48 H 1.08995 * 109.52874 * 181.33017 * 25 15 14 49 49 H 1.09009 * 109.58410 * 353.37346 * 26 12 10 50 50 H 1.09001 * 109.58902 * 113.65152 * 26 12 10 51 51 H 1.09001 * 109.62751 * 213.85823 * 27 7 6 52 52 H 1.08997 * 109.63137 * 334.44211 * 27 7 6 53 53 H 1.08998 * 108.89970 * 303.44945 * 28 2 1 54 54 H 1.09005 * 108.89162 * 62.04068 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8826 1.0314 0.0000 4 6 2.0294 -0.6985 -1.2812 5 6 3.4467 -0.2643 -1.5408 6 6 4.4804 -1.2410 -0.9483 7 6 4.0936 -1.7404 0.4569 8 1 3.3423 -2.5239 0.3584 9 7 5.2819 -2.3025 1.1039 10 6 5.6295 -3.5848 0.8774 11 8 4.9088 -4.3012 0.2096 12 7 6.7758 -4.0730 1.3911 13 6 7.6027 -3.2543 2.2880 14 6 7.8527 -4.0460 3.5805 15 6 8.4628 -5.4050 3.2296 16 6 8.7487 -6.1828 4.5158 17 6 9.8057 -5.4635 5.3134 18 1 10.2313 -4.5437 4.9402 19 6 10.2302 -5.9801 6.5192 20 7 9.7122 -7.1004 6.9735 21 14 11.5398 -5.0881 7.5083 22 1 11.0590 -3.7255 7.8511 23 1 11.8174 -5.8432 8.7565 24 1 12.7839 -4.9862 6.7039 25 6 7.4825 -6.1974 2.3618 26 6 7.2255 -5.4320 1.0599 27 6 3.5394 -0.6436 1.3254 28 6 2.0014 -0.6572 1.2100 29 1 -0.3633 -1.0274 -0.0250 30 1 -0.3633 0.4920 0.9023 31 1 -0.3633 0.5354 -0.8771 32 1 1.3990 -0.4132 -2.1234 33 1 1.9968 -1.7795 -1.1453 34 1 3.5998 0.7210 -1.1007 35 1 3.6017 -0.1971 -2.6177 36 1 5.4456 -0.7381 -0.8894 37 1 4.5739 -2.0998 -1.6131 38 1 5.8207 -1.7506 1.6921 39 1 8.5534 -3.0290 1.8046 40 1 7.0802 -2.3266 2.5214 41 1 6.9098 -4.1955 4.1067 42 1 8.5412 -3.4919 4.2184 43 1 9.3931 -5.2545 2.6819 44 1 7.8354 -6.2568 5.1062 45 1 9.1010 -7.1833 4.2646 46 1 10.0106 -7.4637 7.8219 47 1 6.5430 -6.3266 2.8993 48 1 7.9073 -7.1744 2.1316 49 1 6.4540 -5.9417 0.4825 50 1 8.1446 -5.3807 0.4762 51 1 3.8304 -0.8149 2.3618 52 1 3.9233 0.3194 0.9887 53 1 1.5780 -0.1483 2.0760 54 1 1.6582 -1.6918 1.2063 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572597330.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:26 Heat of formation + Delta-G solvation = -81.384164 kcal Electronic energy + Delta-G solvation = -28387.601756 eV Core-core repulsion = 24742.937180 eV Total energy + Delta-G solvation = -3644.664576 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.62993 -40.14509 -38.70059 -36.14210 -35.68237 -34.11204 -33.54237 -32.41984 -31.51101 -29.73058 -28.08708 -26.43589 -25.45200 -24.25295 -23.98206 -23.38663 -21.54285 -21.25450 -20.41840 -20.35678 -18.93130 -18.38650 -17.57291 -16.67454 -16.50487 -16.36361 -15.79541 -15.62462 -15.28665 -15.27591 -15.11464 -14.70146 -14.54442 -14.35203 -14.26058 -13.89079 -13.87385 -13.62344 -13.36209 -13.25398 -12.95937 -12.94154 -12.75485 -12.53050 -12.46369 -12.32039 -12.18931 -11.99006 -11.90380 -11.75766 -11.38051 -11.36948 -11.31111 -11.26383 -11.21189 -11.06195 -10.95377 -10.83745 -10.50439 -10.12722 -9.42002 -8.14870 -6.24765 1.42603 1.45116 1.52565 1.69195 2.14387 2.43950 2.92695 3.18648 3.61228 3.77351 3.91581 3.98681 4.02764 4.08877 4.12185 4.14745 4.21507 4.30337 4.37254 4.41341 4.47012 4.50017 4.57218 4.67572 4.78670 4.80238 4.83631 4.86723 4.90083 4.96875 4.99951 5.04190 5.07608 5.10855 5.15194 5.23141 5.31092 5.32041 5.33445 5.35440 5.39479 5.42604 5.47751 5.52232 5.56172 5.60302 5.63624 5.67528 5.82660 5.90626 6.03134 6.30047 6.92071 6.98918 7.43972 7.58024 8.96962 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.021797 B = 0.002353 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.284320 B =11894.953191 C =12410.533419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.088 4.088 3 H 0.081 0.919 4 C -0.116 4.116 5 C -0.108 4.108 6 C -0.122 4.122 7 C 0.165 3.835 8 H 0.058 0.942 9 N -0.735 5.735 10 C 0.702 3.298 11 O -0.637 6.637 12 N -0.626 5.626 13 C 0.119 3.881 14 C -0.112 4.112 15 C -0.072 4.072 16 C 0.032 3.968 17 C -0.526 4.526 18 H 0.069 0.931 19 C -0.006 4.006 20 N -0.939 5.939 21 Si 0.962 3.038 22 H -0.264 1.264 23 H -0.291 1.291 24 H -0.266 1.266 25 C -0.122 4.122 26 C 0.137 3.863 27 C -0.120 4.120 28 C -0.109 4.109 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.046 0.954 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.035 0.965 38 H 0.407 0.593 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.041 0.959 42 H 0.077 0.923 43 H 0.065 0.935 44 H -0.018 1.018 45 H -0.015 1.015 46 H 0.260 0.740 47 H 0.041 0.959 48 H 0.071 0.929 49 H 0.077 0.923 50 H 0.081 0.919 51 H 0.074 0.926 52 H 0.091 0.909 53 H 0.074 0.926 54 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.290 19.581 -15.828 28.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.106 4.106 3 H 0.099 0.901 4 C -0.154 4.154 5 C -0.146 4.146 6 C -0.161 4.161 7 C 0.061 3.939 8 H 0.076 0.924 9 N -0.392 5.392 10 C 0.403 3.597 11 O -0.520 6.520 12 N -0.362 5.362 13 C -0.004 4.004 14 C -0.150 4.150 15 C -0.091 4.091 16 C -0.005 4.005 17 C -0.564 4.564 18 H 0.087 0.913 19 C -0.203 4.203 20 N -0.579 5.579 21 Si 0.787 3.213 22 H -0.189 1.189 23 H -0.216 1.216 24 H -0.191 1.191 25 C -0.160 4.160 26 C 0.014 3.986 27 C -0.158 4.158 28 C -0.147 4.147 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.054 0.946 38 H 0.246 0.754 39 H 0.104 0.896 40 H 0.116 0.884 41 H 0.060 0.940 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.000 1.000 45 H 0.003 0.997 46 H 0.069 0.931 47 H 0.060 0.940 48 H 0.089 0.911 49 H 0.095 0.905 50 H 0.099 0.901 51 H 0.093 0.907 52 H 0.110 0.890 53 H 0.092 0.908 54 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.795 18.968 -16.173 28.490 hybrid contribution 0.879 -0.505 1.241 1.602 sum -12.916 18.463 -14.932 27.031 Atomic orbital electron populations 1.21936 0.95087 1.01518 1.02172 1.20092 0.95973 1.00321 0.94260 0.90077 1.21448 0.96257 0.99830 0.97845 1.21260 0.93709 0.98936 1.00709 1.22264 0.99804 0.98814 0.95177 1.20758 0.85523 0.95554 0.92102 0.92420 1.45548 1.31293 1.10262 1.52146 1.16070 0.81051 0.82806 0.79736 1.90843 1.53944 1.59547 1.47624 1.47391 1.22428 1.16341 1.50079 1.21899 0.95770 0.93318 0.89381 1.21849 1.00230 0.96253 0.96705 1.21024 0.97158 0.95153 0.95730 1.19019 0.94593 0.94291 0.92563 1.21639 1.21403 1.08858 1.04463 0.91279 1.26006 0.99184 0.95812 0.99278 1.70115 1.44913 1.21786 1.21126 0.85545 0.79454 0.78717 0.77597 1.18873 1.21647 1.19124 1.21918 0.98970 0.99138 0.95975 1.21412 1.00012 0.81066 0.96105 1.21643 0.96097 0.98586 0.99453 1.20475 0.94440 1.00891 0.98875 0.93579 0.92275 0.92036 0.90957 0.93470 0.90312 0.91741 0.91348 0.94558 0.75445 0.89588 0.88397 0.93974 0.90420 0.91660 0.99980 0.99661 0.93099 0.93998 0.91061 0.90489 0.90099 0.90713 0.89031 0.90751 0.93589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.97 71.98 0.65 -0.99 16 2 C -0.09 -1.02 2.22 -12.65 -0.03 -1.05 16 3 H 0.08 0.76 7.47 -2.38 -0.02 0.74 16 4 C -0.12 -1.58 4.98 30.20 0.15 -1.43 16 5 C -0.11 -1.41 5.31 30.14 0.16 -1.25 16 6 C -0.12 -2.19 5.41 31.31 0.17 -2.02 16 7 C 0.17 3.28 2.02 44.53 0.09 3.37 16 8 H 0.06 1.52 5.91 -2.39 -0.01 1.51 16 9 N -0.73 -16.31 4.81 -460.01 -2.21 -18.52 16 10 C 0.70 21.41 8.26 179.06 1.48 22.89 16 11 O -0.64 -24.54 15.35 -4.00 -0.06 -24.60 16 12 N -0.63 -18.00 2.97 -836.06 -2.48 -20.48 16 13 C 0.12 2.89 6.42 86.51 0.56 3.44 16 14 C -0.11 -3.72 5.21 30.82 0.16 -3.56 16 15 C -0.07 -2.79 2.10 -10.77 -0.02 -2.81 16 16 C 0.03 1.67 4.45 29.85 0.13 1.80 16 17 C -0.53 -28.51 8.39 25.60 0.21 -28.29 16 18 H 0.07 3.48 7.06 -2.91 -0.02 3.46 16 19 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 20 N -0.94 -57.20 13.29 21.45 0.28 -56.91 16 21 Si 0.96 43.23 29.54 68.60 2.03 45.26 16 22 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 23 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 25 C -0.12 -4.25 5.36 30.67 0.16 -4.09 16 26 C 0.14 4.15 6.44 86.36 0.56 4.70 16 27 C -0.12 -1.65 5.18 30.20 0.16 -1.49 16 28 C -0.11 -1.47 4.44 28.74 0.13 -1.34 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.58 8.11 -2.38 -0.02 0.56 16 31 H 0.06 0.58 8.12 -2.39 -0.02 0.56 16 32 H 0.07 0.85 7.97 -2.39 -0.02 0.83 16 33 H 0.05 0.85 6.97 -2.39 -0.02 0.84 16 34 H 0.08 0.78 6.63 -2.39 -0.02 0.77 16 35 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.07 1.13 8.12 -2.39 -0.02 1.11 16 37 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.41 6.87 6.03 -92.71 -0.56 6.31 16 39 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.10 1.77 5.64 -2.39 -0.01 1.76 16 41 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 42 H 0.08 2.68 6.91 -2.39 -0.02 2.66 16 43 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 44 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 45 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 46 H 0.26 15.04 8.31 -92.72 -0.77 14.27 16 47 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 48 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 49 H 0.08 2.50 7.00 -2.38 -0.02 2.48 16 50 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 51 H 0.07 1.03 7.89 -2.39 -0.02 1.01 16 52 H 0.09 0.94 6.98 -2.39 -0.02 0.92 16 53 H 0.07 0.86 8.08 -2.39 -0.02 0.84 16 54 H 0.05 0.80 7.46 -2.38 -0.02 0.78 16 Total: -1.00 -70.35 398.09 3.03 -67.33 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.30 Total: 19.93 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 5.17 Total: -11.99 kcal Atomic # 7 Polarization: -91.51 SS G_CDS: -4.41 Total: -95.92 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.06 Total: -24.60 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -70.35 3.03 -67.33 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572597330.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.059 kcal (2) G-P(sol) polarization free energy of solvation -70.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds