Wall clock time and date at job start Tue Mar 31 2020 15:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.62173 * 2 1 4 4 C 1.50470 * 109.78685 * 120.48670 * 2 1 3 5 5 C 1.54065 * 112.49665 * 213.95729 * 4 2 1 6 6 C 1.53818 * 112.88580 * 318.13168 * 5 4 2 7 7 C 1.50469 * 112.64067 * 318.57245 * 6 5 4 8 8 H 1.08999 * 109.63338 * 334.08523 * 7 6 5 9 9 N 1.46506 * 109.62987 * 213.69646 * 7 6 5 10 10 C 1.34776 * 119.99431 * 85.39066 * 9 7 6 11 11 O 1.21583 * 120.00434 * 5.07703 * 10 9 7 12 12 N 1.34779 * 119.99825 * 185.07876 * 10 9 7 13 13 C 1.46927 * 120.63360 * 174.96404 * 12 10 9 14 14 C 1.53187 * 108.77775 * 233.63456 * 13 12 10 15 15 C 1.53043 * 109.31219 * 305.36386 * 14 13 12 16 16 C 1.52996 * 109.46087 * 181.38667 * 15 14 13 17 17 C 1.50696 * 109.47330 * 174.99767 * 16 15 14 18 18 H 1.08003 * 119.99777 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00713 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99335 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00474 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47139 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47488 * 240.00144 * 21 19 17 24 24 H 1.48508 * 109.47222 * 120.00093 * 21 19 17 25 25 C 1.53037 * 109.53775 * 61.36255 * 15 14 13 26 26 C 1.46928 * 120.63128 * 354.99044 * 12 10 9 27 27 C 1.54238 * 108.68127 * 93.89415 * 7 6 5 28 28 C 1.45539 * 112.40925 * 280.10822 * 27 7 6 29 29 H 1.09003 * 109.47181 * 180.38348 * 1 2 3 30 30 H 1.09001 * 109.47153 * 300.38417 * 1 2 3 31 31 H 1.08996 * 109.47187 * 60.38566 * 1 2 3 32 32 H 1.09004 * 108.87757 * 334.73399 * 4 2 1 33 33 H 1.09005 * 108.87676 * 93.17751 * 4 2 1 34 34 H 1.09003 * 108.81600 * 79.14398 * 5 4 2 35 35 H 1.08995 * 108.81404 * 197.53498 * 5 4 2 36 36 H 1.09003 * 108.93142 * 197.66921 * 6 5 4 37 37 H 1.08997 * 108.67662 * 79.30538 * 6 5 4 38 38 H 0.97001 * 120.00374 * 265.38906 * 9 7 6 39 39 H 1.08998 * 109.58845 * 113.84335 * 13 12 10 40 40 H 1.09008 * 109.70349 * 353.48922 * 13 12 10 41 41 H 1.09003 * 109.50010 * 185.41417 * 14 13 12 42 42 H 1.09000 * 109.52978 * 65.33353 * 14 13 12 43 43 H 1.08998 * 109.45636 * 301.35758 * 15 14 13 44 44 H 1.09003 * 109.47668 * 54.99874 * 16 15 14 45 45 H 1.08997 * 109.47447 * 295.00171 * 16 15 14 46 46 H 0.96999 * 120.00253 * 359.97438 * 20 19 17 47 47 H 1.09006 * 109.49509 * 58.59443 * 25 15 14 48 48 H 1.09005 * 109.49781 * 178.68191 * 25 15 14 49 49 H 1.09002 * 109.58260 * 246.15631 * 26 12 10 50 50 H 1.08996 * 109.58366 * 6.58020 * 26 12 10 51 51 H 1.09001 * 108.89547 * 40.86181 * 27 7 6 52 52 H 1.09004 * 108.89679 * 159.35167 * 27 7 6 53 53 H 1.08995 * 108.89647 * 182.68822 * 28 27 7 54 54 H 1.09006 * 108.89487 * 301.28176 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0395 -0.7183 1.2201 5 6 3.3500 -0.1118 1.7571 6 6 4.3410 0.2557 0.6396 7 6 4.4043 -0.7862 -0.4442 8 1 4.1195 -1.7562 -0.0368 9 7 5.7663 -0.8578 -0.9791 10 6 6.6884 -1.6316 -0.3730 11 8 6.3679 -2.3409 0.5610 12 7 7.9660 -1.6191 -0.8022 13 6 9.0043 -2.3712 -0.0846 14 6 10.1553 -1.4198 0.2568 15 6 10.6446 -0.7376 -1.0229 16 6 11.8171 0.1875 -0.6911 17 6 12.3778 0.7646 -1.9653 18 1 11.9412 0.4985 -2.9166 19 6 13.4475 1.6332 -1.9167 20 7 13.9788 1.9576 -0.7582 21 14 14.1420 2.3491 -3.4960 22 1 13.3720 1.8306 -4.6551 23 1 15.5676 1.9563 -3.6327 24 1 14.0382 3.8300 -3.4559 25 6 9.5055 0.0818 -1.6337 26 6 8.3470 -0.8526 -1.9964 27 6 3.4263 -0.3892 -1.5688 28 6 2.0482 -0.7348 -1.2533 29 1 -0.3634 -1.0277 0.0069 30 1 -0.3633 0.5198 0.8865 31 1 -0.3633 0.5078 -0.8934 32 1 1.2812 -0.6675 2.0015 33 1 2.2126 -1.7643 0.9669 34 1 3.1137 0.7858 2.3286 35 1 3.8262 -0.8345 2.4195 36 1 5.3342 0.3747 1.0727 37 1 4.0344 1.2044 0.1992 38 1 6.0044 -0.3483 -1.7695 39 1 9.3731 -3.1790 -0.7166 40 1 8.5889 -2.7864 0.8338 41 1 10.9737 -1.9843 0.7037 42 1 9.8071 -0.6645 0.9613 43 1 10.9700 -1.4948 -1.7363 44 1 12.5931 -0.3794 -0.1768 45 1 11.4710 0.9962 -0.0474 46 1 13.6179 1.5862 0.0620 47 1 9.1628 0.8230 -0.9116 48 1 9.8612 0.5861 -2.5322 49 1 8.6622 -1.5366 -2.7844 50 1 7.4964 -0.2638 -2.3394 51 1 3.4922 0.6867 -1.7305 52 1 3.7172 -0.9006 -2.4865 53 1 1.4157 -0.4743 -2.1019 54 1 1.9840 -1.8094 -1.0824 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572597332.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:35 Heat of formation + Delta-G solvation = -86.100900 kcal Electronic energy + Delta-G solvation = -28530.472241 eV Core-core repulsion = 24885.603132 eV Total energy + Delta-G solvation = -3644.869109 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.69357 -40.16036 -38.76957 -36.03177 -35.95960 -34.12434 -33.53129 -32.67692 -31.71312 -29.50525 -28.13917 -26.27274 -25.28556 -24.30182 -24.00906 -23.57391 -21.71629 -21.60253 -20.42940 -20.12609 -19.05353 -18.81315 -17.64735 -16.58429 -16.35735 -15.95390 -15.72248 -15.58901 -15.55102 -15.36572 -15.28446 -14.95987 -14.62660 -14.52673 -14.39035 -14.03755 -13.86272 -13.70303 -13.40468 -13.22758 -13.14253 -12.98228 -12.86982 -12.47994 -12.35553 -12.28073 -12.08850 -11.90164 -11.79896 -11.59422 -11.50701 -11.44776 -11.40197 -11.38966 -11.21906 -11.07896 -10.98710 -10.54639 -10.50579 -10.18480 -9.48627 -8.63477 -6.33209 1.54029 1.62111 1.63490 1.78535 2.12062 2.59179 2.87033 3.20695 3.58373 3.66990 3.83073 3.90869 3.95046 3.99084 4.12591 4.14721 4.20093 4.23543 4.31803 4.36175 4.43694 4.45360 4.48619 4.57685 4.72091 4.74937 4.77061 4.80064 4.85809 4.89006 4.94536 5.00109 5.08112 5.11531 5.12688 5.14570 5.17757 5.22099 5.25272 5.29393 5.31903 5.35938 5.38173 5.45113 5.47673 5.55155 5.62187 5.65122 5.66898 5.97573 6.06543 6.24517 6.62590 6.94294 7.48986 7.53620 8.76772 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.021023 B = 0.002425 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.545632 B =11543.264399 C =12025.829627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.075 0.925 4 C -0.112 4.112 5 C -0.110 4.110 6 C -0.125 4.125 7 C 0.165 3.835 8 H 0.068 0.932 9 N -0.733 5.733 10 C 0.704 3.296 11 O -0.634 6.634 12 N -0.626 5.626 13 C 0.139 3.861 14 C -0.122 4.122 15 C -0.066 4.066 16 C 0.016 3.984 17 C -0.599 4.599 18 H 0.060 0.940 19 C -0.046 4.046 20 N -0.946 5.946 21 Si 1.121 2.879 22 H -0.263 1.263 23 H -0.284 1.284 24 H -0.283 1.283 25 C -0.111 4.111 26 C 0.119 3.881 27 C -0.115 4.115 28 C -0.109 4.109 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.039 0.961 36 H 0.034 0.966 37 H 0.078 0.922 38 H 0.406 0.594 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.043 0.957 43 H 0.063 0.937 44 H -0.019 1.019 45 H -0.021 1.021 46 H 0.253 0.747 47 H 0.042 0.958 48 H 0.076 0.924 49 H 0.084 0.916 50 H 0.100 0.900 51 H 0.079 0.921 52 H 0.074 0.926 53 H 0.081 0.919 54 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.481 -4.736 -3.645 28.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 H 0.093 0.907 4 C -0.149 4.149 5 C -0.149 4.149 6 C -0.164 4.164 7 C 0.060 3.940 8 H 0.086 0.914 9 N -0.391 5.391 10 C 0.405 3.595 11 O -0.516 6.516 12 N -0.363 5.363 13 C 0.015 3.985 14 C -0.160 4.160 15 C -0.085 4.085 16 C -0.021 4.021 17 C -0.637 4.637 18 H 0.078 0.922 19 C -0.243 4.243 20 N -0.584 5.584 21 Si 0.943 3.057 22 H -0.187 1.187 23 H -0.210 1.210 24 H -0.209 1.209 25 C -0.149 4.149 26 C -0.003 4.003 27 C -0.153 4.153 28 C -0.147 4.147 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.096 0.904 38 H 0.245 0.755 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.062 0.938 43 H 0.081 0.919 44 H 0.000 1.000 45 H -0.003 1.003 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.094 0.906 49 H 0.102 0.898 50 H 0.118 0.882 51 H 0.098 0.902 52 H 0.093 0.907 53 H 0.099 0.901 54 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -26.577 -4.247 -3.581 27.152 hybrid contribution -0.231 -0.698 1.118 1.338 sum -26.809 -4.945 -2.463 27.372 Atomic orbital electron populations 1.21862 0.94246 1.01889 1.02082 1.20928 0.96008 0.99847 0.94047 0.90685 1.21415 0.95928 0.99433 0.98167 1.21751 0.95288 1.00677 0.97147 1.21714 0.98551 0.99504 0.96615 1.20610 0.79735 0.99246 0.94429 0.91410 1.45384 1.10823 1.49585 1.33281 1.16009 0.81088 0.80474 0.81915 1.90846 1.80386 1.46989 1.33338 1.47375 1.06115 1.52312 1.30488 1.21379 0.86581 0.93213 0.97297 1.21939 0.97735 0.98601 0.97773 1.20915 0.94744 0.96834 0.96021 1.19203 0.93449 0.93614 0.95841 1.22481 1.17665 1.29467 0.94103 0.92190 1.27422 0.95489 0.95848 1.05521 1.70863 1.43431 1.45348 0.98751 0.82893 0.75816 0.75872 0.71165 1.18692 1.20998 1.20867 1.21758 0.94599 0.97372 1.01197 1.21793 0.97844 0.94184 0.86478 1.20691 0.94603 1.02881 0.97124 1.20475 0.95297 1.00379 0.98560 0.92734 0.92553 0.91932 0.91437 0.92987 0.91382 0.94169 0.94678 0.90391 0.75525 0.90316 0.90278 0.91012 0.93788 0.91879 1.00029 1.00256 0.93773 0.93888 0.90597 0.89771 0.88229 0.90226 0.90694 0.90061 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.88 71.98 0.64 -0.72 16 2 C -0.09 -1.05 2.39 -11.19 -0.03 -1.07 16 3 H 0.07 0.88 6.99 -2.39 -0.02 0.87 16 4 C -0.11 -1.67 4.89 30.14 0.15 -1.52 16 5 C -0.11 -2.07 5.84 31.23 0.18 -1.88 16 6 C -0.13 -2.53 5.02 30.05 0.15 -2.38 16 7 C 0.16 3.27 2.16 44.59 0.10 3.36 16 8 H 0.07 1.69 6.37 -2.39 -0.02 1.67 16 9 N -0.73 -16.34 4.89 -459.73 -2.25 -18.59 16 10 C 0.70 21.28 8.12 179.05 1.45 22.73 16 11 O -0.63 -23.93 15.42 -3.98 -0.06 -23.99 16 12 N -0.63 -17.95 2.97 -836.92 -2.49 -20.44 16 13 C 0.14 4.17 6.41 86.36 0.55 4.72 16 14 C -0.12 -4.21 5.36 30.67 0.16 -4.04 16 15 C -0.07 -2.58 2.10 -10.77 -0.02 -2.60 16 16 C 0.02 0.81 3.76 29.85 0.11 0.93 16 17 C -0.60 -32.85 8.39 25.60 0.21 -32.64 16 18 H 0.06 3.12 7.05 -2.91 -0.02 3.10 16 19 C -0.05 -2.66 5.46 84.65 0.46 -2.20 16 20 N -0.95 -59.08 13.65 21.45 0.29 -58.79 16 21 Si 1.12 49.52 29.90 68.60 2.05 51.57 16 22 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 24 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 25 C -0.11 -3.70 5.19 30.67 0.16 -3.54 16 26 C 0.12 2.94 6.43 86.36 0.56 3.49 16 27 C -0.12 -1.46 4.77 28.74 0.14 -1.33 16 28 C -0.11 -1.24 4.69 28.74 0.13 -1.10 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.52 8.11 -2.39 -0.02 0.50 16 31 H 0.06 0.50 8.13 -2.39 -0.02 0.48 16 32 H 0.07 0.90 7.69 -2.38 -0.02 0.88 16 33 H 0.05 0.88 6.64 -2.38 -0.02 0.87 16 34 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.03 0.92 7.81 -2.39 -0.02 0.90 16 37 H 0.08 1.29 6.66 -2.39 -0.02 1.27 16 38 H 0.41 6.97 6.07 -92.71 -0.56 6.41 16 39 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.08 2.53 7.04 -2.38 -0.02 2.51 16 41 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 42 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 44 H -0.02 -1.03 8.01 -2.39 -0.02 -1.05 16 45 H -0.02 -1.17 8.01 -2.39 -0.02 -1.19 16 46 H 0.25 16.13 7.22 -92.71 -0.67 15.46 16 47 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 48 H 0.08 2.68 6.91 -2.38 -0.02 2.66 16 49 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 50 H 0.10 1.82 5.56 -2.39 -0.01 1.81 16 51 H 0.08 0.85 7.48 -2.39 -0.02 0.83 16 52 H 0.07 0.87 8.12 -2.38 -0.02 0.85 16 53 H 0.08 0.70 7.96 -2.39 -0.02 0.68 16 54 H 0.06 0.73 7.47 -2.38 -0.02 0.71 16 Total: -1.00 -71.22 396.60 3.06 -68.16 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.40 Total: 21.88 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: 5.11 Total: -19.80 kcal Atomic # 7 Polarization: -93.38 SS G_CDS: -4.44 Total: -97.82 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.06 Total: -23.99 kcal Atomic # 14 Polarization: 49.52 SS G_CDS: 2.05 Total: 51.57 kcal Total: -71.22 3.06 -68.16 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572597332.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.942 kcal (2) G-P(sol) polarization free energy of solvation -71.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds