Wall clock time and date at job start Tue Mar 31 2020 15:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.62285 * 2 1 4 4 C 1.54241 * 109.62585 * 239.62189 * 2 1 3 5 5 C 1.45546 * 112.40194 * 160.11466 * 4 2 1 6 6 C 1.54241 * 112.40711 * 61.93635 * 5 4 2 7 7 C 1.50471 * 108.51652 * 279.99963 * 6 5 4 8 8 H 1.09002 * 108.87421 * 333.47791 * 7 6 5 9 9 N 1.46494 * 108.87820 * 214.93845 * 7 6 5 10 10 C 1.34771 * 120.00356 * 84.99734 * 9 7 6 11 11 O 1.21590 * 120.00292 * 4.98937 * 10 9 7 12 12 N 1.34775 * 120.00288 * 184.98593 * 10 9 7 13 13 C 1.46931 * 120.63239 * 174.77134 * 12 10 9 14 14 C 1.53190 * 108.77487 * 126.37381 * 13 12 10 15 15 C 1.53042 * 109.31582 * 54.63174 * 14 13 12 16 16 C 1.52995 * 109.45114 * 178.62059 * 15 14 13 17 17 C 1.50701 * 109.47285 * 295.06527 * 16 15 14 18 18 H 1.08002 * 120.00017 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00432 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99648 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 120.00564 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47156 * 59.99908 * 21 19 17 23 23 H 1.48493 * 109.47392 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47089 * 300.00563 * 21 19 17 25 25 C 1.53034 * 109.53839 * 298.64037 * 15 14 13 26 26 C 1.46924 * 120.63138 * 354.75252 * 12 10 9 27 27 C 1.54061 * 112.49869 * 94.15295 * 7 6 5 28 28 C 1.50469 * 109.79115 * 120.48548 * 2 1 3 29 29 H 1.08999 * 109.46641 * 180.38030 * 1 2 3 30 30 H 1.09001 * 109.46838 * 300.38166 * 1 2 3 31 31 H 1.08995 * 109.47316 * 60.37995 * 1 2 3 32 32 H 1.09000 * 108.89572 * 39.36266 * 4 2 1 33 33 H 1.08998 * 108.81664 * 280.81697 * 4 2 1 34 34 H 1.08999 * 108.89250 * 301.18284 * 5 4 2 35 35 H 1.09002 * 108.89183 * 182.68902 * 5 4 2 36 36 H 1.09002 * 109.62562 * 160.29498 * 6 5 4 37 37 H 1.08997 * 109.63306 * 39.71135 * 6 5 4 38 38 H 0.97001 * 119.99760 * 264.99537 * 9 7 6 39 39 H 1.09002 * 109.58664 * 246.15710 * 13 12 10 40 40 H 1.08996 * 109.58648 * 6.58118 * 13 12 10 41 41 H 1.09000 * 109.49854 * 174.58515 * 14 13 12 42 42 H 1.09002 * 109.49567 * 294.68470 * 14 13 12 43 43 H 1.09002 * 109.45381 * 58.65933 * 15 14 13 44 44 H 1.09006 * 109.47061 * 55.05930 * 16 15 14 45 45 H 1.08995 * 109.47726 * 175.06321 * 16 15 14 46 46 H 0.96999 * 120.00070 * 180.02562 * 20 19 17 47 47 H 1.09003 * 109.49792 * 301.41040 * 25 15 14 48 48 H 1.09008 * 109.49817 * 181.31795 * 25 15 14 49 49 H 1.09001 * 109.58360 * 353.41713 * 26 12 10 50 50 H 1.08997 * 109.59223 * 113.83581 * 26 12 10 51 51 H 1.09004 * 108.80849 * 79.14673 * 27 7 6 52 52 H 1.09001 * 108.81983 * 197.42597 * 27 7 6 53 53 H 1.09000 * 108.87214 * 334.73153 * 28 2 1 54 54 H 1.09000 * 108.87607 * 93.26906 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0481 -0.7347 -1.2533 5 6 3.4263 -0.3891 -1.5689 6 6 4.4043 -0.7863 -0.4443 7 6 4.3400 0.2589 0.6362 8 1 4.0305 1.2055 0.1931 9 7 5.6747 0.4224 1.2175 10 6 6.5652 1.2515 0.6380 11 8 6.2327 1.9321 -0.3131 12 7 7.8244 1.3263 1.1127 13 6 8.8373 2.1375 0.4235 14 6 9.4608 3.1082 1.4313 15 6 9.9953 2.3200 2.6294 16 6 10.6494 3.2831 3.6220 17 6 11.8608 3.9144 2.9856 18 1 12.1363 3.6550 1.9740 19 6 12.6168 4.8240 3.6942 20 7 12.2810 5.1403 4.9258 21 14 14.1187 5.6059 2.9056 22 1 13.7073 6.3518 1.6892 23 1 14.7535 6.5408 3.8690 24 1 15.0897 4.5464 2.5317 25 6 8.8408 1.5866 3.3157 26 6 8.2103 0.5986 2.3293 27 6 3.3501 -0.1118 1.7570 28 6 2.0395 -0.7183 1.2201 29 1 -0.3632 -1.0277 0.0068 30 1 -0.3633 0.5198 0.8866 31 1 -0.3634 0.5079 -0.8933 32 1 1.4157 -0.4740 -2.1020 33 1 1.9838 -1.8093 -1.0826 34 1 3.4922 0.6868 -1.7303 35 1 3.7171 -0.9004 -2.4865 36 1 5.4176 -0.8397 -0.8422 37 1 4.1173 -1.7547 -0.0345 38 1 5.9175 -0.0660 2.0196 39 1 9.6112 1.4869 0.0161 40 1 8.3678 2.7000 -0.3834 41 1 10.2798 3.6489 0.9569 42 1 8.7046 3.8164 1.7700 43 1 10.7335 1.5949 2.2867 44 1 9.9368 4.0607 3.8971 45 1 10.9518 2.7352 4.5144 46 1 12.8126 5.7804 5.4243 47 1 8.0903 2.3091 3.6366 48 1 9.2184 1.0443 4.1827 49 1 7.3270 0.1459 2.7798 50 1 8.9329 -0.1775 2.0773 51 1 3.8254 -0.8338 2.4210 52 1 3.1138 0.7858 2.3285 53 1 1.2813 -0.6674 2.0015 54 1 2.2143 -1.7639 0.9665 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572597333.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:39 Heat of formation + Delta-G solvation = -81.302157 kcal Electronic energy + Delta-G solvation = -28365.033491 eV Core-core repulsion = 24720.372472 eV Total energy + Delta-G solvation = -3644.661020 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -41.64155 -40.10450 -38.68191 -36.05955 -35.69531 -34.05475 -33.62818 -32.48107 -31.58158 -29.73752 -28.14324 -26.41862 -25.45601 -24.21645 -23.83281 -23.41327 -21.55055 -21.44158 -20.53980 -20.20633 -18.89354 -18.36276 -17.45908 -16.74421 -16.52679 -16.22316 -15.87562 -15.54909 -15.36306 -15.29962 -14.94627 -14.73552 -14.57106 -14.40555 -14.26544 -14.04016 -13.85035 -13.69872 -13.39738 -13.33478 -13.00785 -12.97665 -12.73975 -12.48307 -12.36363 -12.30698 -12.16954 -12.02028 -11.79815 -11.69671 -11.50820 -11.33724 -11.31632 -11.22271 -11.18877 -11.02611 -11.00567 -10.80148 -10.51236 -10.15210 -9.42296 -8.16663 -6.25594 1.40503 1.42786 1.50190 1.68332 2.15511 2.42395 2.93511 3.16748 3.60254 3.74501 3.91842 3.98416 4.02983 4.08434 4.12575 4.20942 4.22522 4.24674 4.39653 4.42994 4.48131 4.49581 4.57476 4.68224 4.73161 4.80937 4.81222 4.89569 4.90297 4.98670 5.00201 5.05611 5.10147 5.15634 5.18092 5.21532 5.24230 5.31085 5.33701 5.38303 5.39209 5.45235 5.47571 5.51136 5.55402 5.61786 5.64533 5.68616 5.81797 5.90444 6.03233 6.30288 6.90807 7.00299 7.42678 7.59057 8.94836 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.031319 B = 0.002206 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.822259 B =12688.252520 C =12985.581992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.054 0.946 4 C -0.108 4.108 5 C -0.113 4.113 6 C -0.118 4.118 7 C 0.163 3.837 8 H 0.056 0.944 9 N -0.734 5.734 10 C 0.702 3.298 11 O -0.636 6.636 12 N -0.626 5.626 13 C 0.137 3.863 14 C -0.110 4.110 15 C -0.072 4.072 16 C 0.033 3.967 17 C -0.529 4.529 18 H 0.063 0.937 19 C -0.003 4.003 20 N -0.935 5.935 21 Si 0.959 3.041 22 H -0.270 1.270 23 H -0.287 1.287 24 H -0.265 1.265 25 C -0.124 4.124 26 C 0.120 3.880 27 C -0.117 4.117 28 C -0.104 4.104 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.040 0.960 35 H 0.061 0.939 36 H 0.046 0.954 37 H 0.087 0.913 38 H 0.406 0.594 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.035 0.965 43 H 0.065 0.935 44 H -0.018 1.018 45 H -0.007 1.007 46 H 0.261 0.739 47 H 0.047 0.953 48 H 0.082 0.918 49 H 0.101 0.899 50 H 0.087 0.913 51 H 0.083 0.917 52 H 0.059 0.941 53 H 0.075 0.925 54 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.989 -18.131 -8.139 29.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 H 0.072 0.928 4 C -0.146 4.146 5 C -0.151 4.151 6 C -0.157 4.157 7 C 0.058 3.942 8 H 0.074 0.926 9 N -0.392 5.392 10 C 0.403 3.597 11 O -0.518 6.518 12 N -0.362 5.362 13 C 0.014 3.986 14 C -0.148 4.148 15 C -0.091 4.091 16 C -0.004 4.004 17 C -0.567 4.567 18 H 0.081 0.919 19 C -0.201 4.201 20 N -0.576 5.576 21 Si 0.784 3.216 22 H -0.195 1.195 23 H -0.213 1.213 24 H -0.190 1.190 25 C -0.162 4.162 26 C -0.003 4.003 27 C -0.155 4.155 28 C -0.142 4.142 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.245 0.755 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.054 0.946 43 H 0.083 0.917 44 H 0.000 1.000 45 H 0.011 0.989 46 H 0.070 0.930 47 H 0.065 0.935 48 H 0.101 0.899 49 H 0.119 0.881 50 H 0.105 0.895 51 H 0.102 0.898 52 H 0.078 0.922 53 H 0.094 0.906 54 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -22.181 -17.564 -8.677 29.593 hybrid contribution 1.291 1.117 0.349 1.742 sum -20.889 -16.447 -8.329 27.861 Atomic orbital electron populations 1.21851 0.94205 1.02257 1.01688 1.20958 0.96143 0.99241 0.95174 0.92777 1.20535 0.95246 1.00950 0.97846 1.20375 0.95829 1.00637 0.98268 1.21721 0.98907 0.99425 0.95631 1.20773 0.80398 0.98846 0.94134 0.92575 1.45481 1.13903 1.47758 1.32064 1.16039 0.80948 0.80404 0.82274 1.90851 1.78926 1.49331 1.32726 1.47384 1.08598 1.51364 1.28896 1.21430 0.89690 0.93101 0.94427 1.21758 0.99215 0.97395 0.96453 1.21027 0.96039 0.96807 0.95229 1.19010 0.94009 0.93343 0.93993 1.21654 1.11083 1.23822 1.00122 0.91901 1.25947 1.01092 0.97607 0.95423 1.70094 1.41117 1.34946 1.11459 0.85595 0.79441 0.78434 0.78161 1.19510 1.21256 1.19018 1.21936 0.97408 0.98378 0.98514 1.21786 1.00933 0.93863 0.83692 1.22126 0.95178 1.01711 0.96516 1.21341 0.95369 1.00099 0.97417 0.91750 0.92528 0.92962 0.92034 0.90824 0.94141 0.91979 0.93548 0.89431 0.75530 0.90290 0.90808 0.91462 0.94577 0.91673 1.00009 0.98889 0.93037 0.93458 0.89943 0.88112 0.89470 0.89835 0.92207 0.90635 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.88 71.98 0.64 -0.83 16 2 C -0.10 -1.23 2.39 -11.19 -0.03 -1.25 16 3 H 0.05 0.91 6.97 -2.39 -0.02 0.90 16 4 C -0.11 -1.38 4.69 28.74 0.13 -1.25 16 5 C -0.11 -1.94 5.26 28.74 0.15 -1.79 16 6 C -0.12 -2.08 5.27 30.20 0.16 -1.92 16 7 C 0.16 3.17 2.02 44.53 0.09 3.26 16 8 H 0.06 1.47 5.91 -2.39 -0.01 1.46 16 9 N -0.73 -15.87 4.83 -460.04 -2.22 -18.09 16 10 C 0.70 21.37 8.09 179.06 1.45 22.82 16 11 O -0.64 -24.75 15.35 -4.00 -0.06 -24.81 16 12 N -0.63 -18.00 2.97 -836.93 -2.49 -20.48 16 13 C 0.14 4.37 6.44 86.36 0.56 4.93 16 14 C -0.11 -4.16 5.19 30.67 0.16 -4.00 16 15 C -0.07 -2.80 2.10 -10.77 -0.02 -2.82 16 16 C 0.03 1.72 4.45 29.85 0.13 1.85 16 17 C -0.53 -29.42 8.39 25.60 0.21 -29.21 16 18 H 0.06 3.33 7.05 -2.91 -0.02 3.31 16 19 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 20 N -0.94 -57.14 13.29 21.45 0.28 -56.86 16 21 Si 0.96 44.45 29.54 68.60 2.03 46.48 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 23 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 25 C -0.12 -3.75 5.36 30.67 0.16 -3.59 16 26 C 0.12 2.71 6.39 86.36 0.55 3.26 16 27 C -0.12 -1.54 5.40 31.31 0.17 -1.37 16 28 C -0.10 -1.09 4.89 30.14 0.15 -0.94 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.56 8.11 -2.39 -0.02 0.54 16 31 H 0.05 0.56 8.13 -2.39 -0.02 0.54 16 32 H 0.06 0.76 7.96 -2.39 -0.02 0.74 16 33 H 0.07 0.75 7.46 -2.39 -0.02 0.74 16 34 H 0.04 0.89 7.47 -2.39 -0.02 0.88 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.05 1.03 7.79 -2.39 -0.02 1.01 16 37 H 0.09 1.14 6.97 -2.39 -0.02 1.12 16 38 H 0.41 6.40 5.95 -92.71 -0.55 5.84 16 39 H 0.08 2.24 8.14 -2.39 -0.02 2.23 16 40 H 0.07 2.56 6.99 -2.39 -0.02 2.54 16 41 H 0.07 2.73 6.91 -2.39 -0.02 2.71 16 42 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 44 H -0.02 -1.06 8.14 -2.38 -0.02 -1.08 16 45 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 46 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 47 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 49 H 0.10 1.60 5.65 -2.39 -0.01 1.59 16 50 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 51 H 0.08 0.81 7.92 -2.39 -0.02 0.79 16 52 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 53 H 0.08 0.67 7.69 -2.39 -0.02 0.65 16 54 H 0.07 0.64 6.62 -2.39 -0.02 0.63 16 Total: -1.00 -71.37 397.41 2.98 -68.40 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.31 Total: 17.95 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: 5.13 Total: -12.59 kcal Atomic # 7 Polarization: -91.01 SS G_CDS: -4.42 Total: -95.43 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.06 Total: -24.81 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -71.37 2.98 -68.40 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572597333.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.905 kcal (2) G-P(sol) polarization free energy of solvation -71.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds