Wall clock time and date at job start Tue Mar 31 2020 15:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47381 * 2 1 4 4 C 1.53005 * 109.46998 * 239.99947 * 2 1 3 5 5 C 1.52998 * 109.47162 * 299.99995 * 4 2 1 6 6 C 1.52996 * 109.47246 * 300.00004 * 5 4 2 7 7 C 1.53005 * 109.47369 * 60.00119 * 6 5 4 8 8 H 1.09004 * 109.46574 * 59.99667 * 7 6 5 9 9 C 1.52996 * 109.47369 * 179.97438 * 7 6 5 10 10 N 1.46497 * 109.47129 * 294.99883 * 9 7 6 11 11 C 1.34778 * 120.00173 * 179.97438 * 10 9 7 12 12 O 1.21587 * 119.99671 * 354.92295 * 11 10 9 13 13 N 1.34778 * 120.00147 * 174.92319 * 11 10 9 14 14 C 1.46933 * 120.62935 * 4.74580 * 13 11 10 15 15 C 1.52760 * 109.00653 * 233.58328 * 14 13 11 16 16 C 1.53042 * 109.38253 * 305.59219 * 15 14 13 17 17 C 1.53000 * 109.46196 * 181.26318 * 16 15 14 18 18 C 1.50703 * 109.47251 * 64.92224 * 17 16 15 19 19 H 1.08001 * 119.99941 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99810 * 180.02562 * 18 17 16 21 21 N 1.31507 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99861 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47115 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47212 * 119.99802 * 22 20 18 25 25 H 1.48488 * 109.47267 * 240.00111 * 22 20 18 26 26 C 1.53036 * 109.54461 * 61.23739 * 16 15 14 27 27 C 1.46927 * 120.63105 * 185.02126 * 13 11 10 28 28 C 1.52998 * 109.46839 * 300.00130 * 7 6 5 29 29 H 1.09001 * 109.47101 * 299.99476 * 1 2 3 30 30 H 1.08997 * 109.46874 * 59.99963 * 1 2 3 31 31 H 1.09007 * 109.46972 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46578 * 180.02562 * 4 2 1 33 33 H 1.08994 * 109.46736 * 60.00306 * 4 2 1 34 34 H 1.09001 * 109.47091 * 180.02562 * 5 4 2 35 35 H 1.08998 * 109.46815 * 60.00004 * 5 4 2 36 36 H 1.09004 * 109.47544 * 300.00380 * 6 5 4 37 37 H 1.09004 * 109.47397 * 179.97438 * 6 5 4 38 38 H 1.09002 * 109.47175 * 54.99660 * 9 7 6 39 39 H 1.09003 * 109.47410 * 174.99911 * 9 7 6 40 40 H 0.97004 * 120.00475 * 359.97438 * 10 9 7 41 41 H 1.08993 * 109.58439 * 353.41397 * 14 13 11 42 42 H 1.08998 * 109.58310 * 113.84641 * 14 13 11 43 43 H 1.08992 * 109.56377 * 185.55264 * 15 14 13 44 44 H 1.09001 * 109.38469 * 65.51424 * 15 14 13 45 45 H 1.09000 * 109.44664 * 301.22217 * 16 15 14 46 46 H 1.09000 * 109.47326 * 184.92664 * 17 16 15 47 47 H 1.09005 * 109.46941 * 304.93024 * 17 16 15 48 48 H 0.97006 * 120.00296 * 180.02562 * 21 20 18 49 49 H 1.08991 * 109.49896 * 178.68413 * 26 16 15 50 50 H 1.09004 * 109.49524 * 58.58793 * 26 16 15 51 51 H 1.09001 * 109.58869 * 246.15683 * 27 13 11 52 52 H 1.08998 * 109.58560 * 6.58743 * 27 13 11 53 53 H 1.09001 * 109.47091 * 179.97438 * 28 7 6 54 54 H 1.08994 * 109.47064 * 299.99343 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5300 -2.1638 -1.2493 6 6 2.0400 -2.8850 -0.0001 7 6 1.5300 -2.1638 1.2493 8 1 0.4400 -2.1638 1.2492 9 6 2.0395 -2.8854 2.4984 10 7 1.4548 -4.2273 2.5598 11 6 1.7632 -5.0507 3.5813 12 8 2.5962 -4.7163 4.4015 13 7 1.1483 -6.2447 3.6936 14 6 0.2169 -6.7077 2.6558 15 6 -1.1120 -7.0806 3.3104 16 6 -0.8605 -8.0955 4.4279 17 6 -2.1937 -8.4942 5.0640 18 6 -3.0385 -9.2186 4.0478 19 1 -2.6619 -9.3791 3.0484 20 6 -4.2920 -9.6766 4.3941 21 7 -4.7507 -9.4808 5.6109 22 14 -5.3389 -10.5752 3.1347 23 1 -4.5992 -10.6658 1.8502 24 1 -5.6420 -11.9426 3.6282 25 1 -6.6073 -9.8323 2.9247 26 6 0.0456 -7.4716 5.4917 27 6 1.3919 -7.1056 4.8591 28 6 2.0400 -0.7213 1.2492 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1301 -0.7216 -1.2490 33 1 1.6767 -0.2074 -2.1392 34 1 1.8937 -2.6777 -2.1390 35 1 0.4400 -2.1637 -1.2493 36 1 3.1300 -2.8850 0.0000 37 1 1.6763 -3.9126 0.0002 38 1 3.1258 -2.9641 2.4550 39 1 1.7512 -2.3226 3.3863 40 1 0.8457 -4.5233 1.8653 41 1 0.0541 -5.9115 1.9295 42 1 0.6327 -7.5822 2.1555 43 1 -1.7762 -7.5175 2.5648 44 1 -1.5730 -6.1858 3.7286 45 1 -0.3775 -8.9801 4.0129 46 1 -2.0086 -9.1487 5.9157 47 1 -2.7177 -7.5995 5.4004 48 1 -5.6325 -9.8033 5.8547 49 1 0.2052 -8.1868 6.2986 50 1 -0.4258 -6.5729 5.8895 51 1 1.9055 -8.0132 4.5420 52 1 2.0041 -6.5718 5.5860 53 1 1.6764 -0.2074 2.1390 54 1 3.1300 -0.7214 1.2493 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573115080.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:02 Heat of formation + Delta-G solvation = -88.540332 kcal Electronic energy + Delta-G solvation = -28236.499873 eV Core-core repulsion = 24591.524982 eV Total energy + Delta-G solvation = -3644.974890 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.52558 -40.20499 -38.81289 -36.12160 -35.67249 -34.02431 -32.79852 -32.28565 -31.65216 -29.77371 -27.61350 -27.01523 -25.87132 -24.17328 -23.48604 -23.17330 -22.09929 -21.43127 -20.48319 -19.43195 -19.08879 -18.39003 -17.31458 -16.74516 -16.53780 -16.42385 -15.92335 -15.42861 -15.30436 -15.25457 -15.05651 -14.73761 -14.69338 -14.55843 -14.35648 -14.04608 -13.87771 -13.50490 -13.35322 -13.16562 -12.95977 -12.86206 -12.73440 -12.51344 -12.43991 -12.36721 -12.28868 -12.12610 -11.86856 -11.79600 -11.71822 -11.41626 -11.24892 -11.13397 -10.99088 -10.87211 -10.82783 -10.80254 -10.51653 -10.18814 -9.42356 -8.14968 -6.24456 1.42114 1.43182 1.55275 1.67541 2.14509 2.43983 2.92546 3.19070 3.66180 3.77773 3.81014 3.92931 4.01817 4.09682 4.19447 4.21755 4.30333 4.33743 4.42359 4.49820 4.52025 4.53981 4.60057 4.67874 4.68152 4.75022 4.80271 4.85746 4.87629 4.92041 4.98344 5.01202 5.07330 5.10920 5.16723 5.20254 5.30738 5.31995 5.33004 5.34093 5.40197 5.41441 5.46843 5.49053 5.56133 5.57784 5.62244 5.69228 5.83326 5.91307 6.00157 6.30665 6.92886 6.96233 7.44446 7.54955 8.97286 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.014050 B = 0.002600 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.407737 B =10766.643425 C =12051.839427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.088 4.088 3 H 0.074 0.926 4 C -0.114 4.114 5 C -0.120 4.120 6 C -0.112 4.112 7 C -0.090 4.090 8 H 0.082 0.918 9 C 0.144 3.856 10 N -0.734 5.734 11 C 0.702 3.298 12 O -0.637 6.637 13 N -0.625 5.625 14 C 0.119 3.881 15 C -0.113 4.113 16 C -0.072 4.072 17 C 0.032 3.968 18 C -0.523 4.523 19 H 0.069 0.931 20 C -0.005 4.005 21 N -0.939 5.939 22 Si 0.960 3.040 23 H -0.255 1.255 24 H -0.284 1.284 25 H -0.283 1.283 26 C -0.122 4.122 27 C 0.138 3.862 28 C -0.105 4.105 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.050 0.950 40 H 0.406 0.594 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.043 0.957 45 H 0.064 0.936 46 H -0.015 1.015 47 H -0.017 1.017 48 H 0.260 0.740 49 H 0.072 0.928 50 H 0.043 0.957 51 H 0.079 0.921 52 H 0.078 0.922 53 H 0.063 0.937 54 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.172 17.150 -15.842 27.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.107 4.107 3 H 0.092 0.908 4 C -0.151 4.151 5 C -0.157 4.157 6 C -0.150 4.150 7 C -0.109 4.109 8 H 0.101 0.899 9 C 0.020 3.980 10 N -0.393 5.393 11 C 0.403 3.597 12 O -0.520 6.520 13 N -0.362 5.362 14 C -0.004 4.004 15 C -0.151 4.151 16 C -0.091 4.091 17 C -0.005 4.005 18 C -0.561 4.561 19 H 0.087 0.913 20 C -0.202 4.202 21 N -0.580 5.580 22 Si 0.786 3.214 23 H -0.179 1.179 24 H -0.210 1.210 25 H -0.209 1.209 26 C -0.160 4.160 27 C 0.014 3.986 28 C -0.143 4.143 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.245 0.755 41 H 0.114 0.886 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.062 0.938 45 H 0.083 0.917 46 H 0.004 0.996 47 H 0.002 0.998 48 H 0.069 0.931 49 H 0.090 0.910 50 H 0.062 0.938 51 H 0.098 0.902 52 H 0.096 0.904 53 H 0.082 0.918 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 14.627 17.380 -15.168 27.314 hybrid contribution -1.309 -0.748 -0.010 1.508 sum 13.318 16.632 -15.178 26.160 Atomic orbital electron populations 1.21960 0.95302 1.02112 1.01621 1.21068 0.95907 0.99209 0.94469 0.90768 1.21566 1.00548 0.95519 0.97488 1.21561 1.01153 0.95671 0.97345 1.21579 1.00819 0.98777 0.93793 1.21373 1.01263 0.95343 0.92884 0.89948 1.21276 0.97606 0.80735 0.98348 1.45231 1.51792 1.15634 1.26644 1.16028 0.81022 0.80510 0.82121 1.90848 1.38380 1.76724 1.46024 1.47376 1.46551 1.17926 1.24311 1.21717 0.88629 1.00756 0.89255 1.21704 0.96568 0.98302 0.98529 1.21021 0.95400 0.97323 0.95321 1.19030 0.92432 0.94162 0.94893 1.21699 1.00588 1.35261 0.98559 0.91306 1.25983 0.99710 0.97365 0.97157 1.70123 1.18898 1.48357 1.20611 0.85462 0.78498 0.77877 0.79606 1.17895 1.21041 1.20891 1.21931 0.95440 1.00143 0.98518 1.21420 0.96360 0.93741 0.87036 1.21515 1.00885 0.93633 0.98283 0.93040 0.92470 0.92192 0.91997 0.91594 0.91643 0.91498 0.92070 0.91974 0.92541 0.93110 0.75463 0.88583 0.89735 0.90380 0.93772 0.91743 0.99633 0.99843 0.93110 0.90965 0.93773 0.90237 0.90368 0.91783 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.50 71.98 0.61 -1.08 16 2 C -0.09 -0.94 3.20 -10.79 -0.03 -0.97 16 3 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 4 C -0.11 -1.14 5.45 30.60 0.17 -0.97 16 5 C -0.12 -1.27 5.65 30.59 0.17 -1.10 16 6 C -0.11 -1.38 5.08 30.59 0.16 -1.22 16 7 C -0.09 -1.22 1.95 -10.79 -0.02 -1.24 16 8 H 0.08 1.13 6.43 -2.39 -0.02 1.12 16 9 C 0.14 2.85 5.07 86.38 0.44 3.29 16 10 N -0.73 -16.33 5.20 -478.54 -2.49 -18.81 16 11 C 0.70 21.26 8.30 179.05 1.49 22.75 16 12 O -0.64 -24.23 15.79 -3.99 -0.06 -24.30 16 13 N -0.63 -17.83 2.98 -837.73 -2.50 -20.33 16 14 C 0.12 2.89 6.40 86.22 0.55 3.44 16 15 C -0.11 -3.68 5.17 30.53 0.16 -3.53 16 16 C -0.07 -2.75 2.10 -10.77 -0.02 -2.77 16 17 C 0.03 1.63 4.45 29.85 0.13 1.76 16 18 C -0.52 -28.17 8.39 25.60 0.21 -27.96 16 19 H 0.07 3.46 7.06 -2.91 -0.02 3.44 16 20 C -0.01 -0.30 5.46 84.66 0.46 0.17 16 21 N -0.94 -56.90 13.29 21.45 0.28 -56.62 16 22 Si 0.96 43.08 29.54 68.60 2.03 45.10 16 23 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 26 C -0.12 -4.17 5.36 30.67 0.16 -4.01 16 27 C 0.14 4.10 6.42 86.36 0.55 4.66 16 28 C -0.11 -1.29 4.73 30.60 0.14 -1.14 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.70 4.81 -2.38 -0.01 0.68 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 35 H 0.07 0.72 6.43 -2.39 -0.02 0.70 16 36 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.06 0.76 7.18 -2.38 -0.02 0.75 16 38 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.41 7.10 5.11 -92.71 -0.47 6.62 16 41 H 0.10 1.75 5.57 -2.39 -0.01 1.74 16 42 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 43 H 0.08 2.66 6.91 -2.39 -0.02 2.64 16 44 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 46 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 47 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 48 H 0.26 14.88 8.31 -92.70 -0.77 14.11 16 49 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 50 H 0.04 1.63 8.14 -2.39 -0.02 1.62 16 51 H 0.08 2.10 8.14 -2.39 -0.02 2.09 16 52 H 0.08 2.49 7.03 -2.39 -0.02 2.47 16 53 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 54 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -68.91 399.31 2.98 -65.92 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 0.38 Total: 18.97 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: 5.34 Total: -9.94 kcal Atomic # 7 Polarization: -91.06 SS G_CDS: -4.70 Total: -95.76 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.06 Total: -24.30 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -68.91 2.98 -65.92 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573115080.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.617 kcal (2) G-P(sol) polarization free energy of solvation -68.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds