Wall clock time and date at job start Tue Mar 31 2020 15:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.46928 * 2 1 4 4 C 1.53009 * 109.47053 * 119.99394 * 2 1 3 5 5 C 1.52992 * 109.47200 * 60.00459 * 4 2 1 6 6 C 1.53000 * 109.47386 * 59.99656 * 5 4 2 7 7 C 1.53009 * 109.47232 * 300.00324 * 6 5 4 8 8 H 1.09004 * 109.46873 * 300.00078 * 7 6 5 9 9 C 1.52997 * 109.47281 * 179.97438 * 7 6 5 10 10 N 1.46507 * 109.46970 * 65.00150 * 9 7 6 11 11 C 1.34770 * 120.00138 * 180.02562 * 10 9 7 12 12 O 1.21588 * 120.00104 * 355.01302 * 11 10 9 13 13 N 1.34780 * 120.00080 * 175.01552 * 11 10 9 14 14 C 1.46924 * 120.62975 * 4.93968 * 13 11 10 15 15 C 1.53620 * 108.54416 * 126.36900 * 14 13 11 16 16 C 1.53043 * 109.23840 * 54.85644 * 15 14 13 17 17 C 1.53007 * 109.44560 * 178.49609 * 16 15 14 18 18 C 1.50694 * 109.47395 * 295.06080 * 17 16 15 19 19 H 1.08005 * 120.00011 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00435 * 180.02562 * 18 17 16 21 21 N 1.31521 * 119.99438 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00275 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46964 * 90.00238 * 22 20 18 24 24 H 1.48505 * 109.47083 * 210.00043 * 22 20 18 25 25 H 1.48492 * 109.47118 * 330.00059 * 22 20 18 26 26 C 1.53044 * 109.53919 * 298.50818 * 16 15 14 27 27 C 1.46924 * 120.62866 * 185.22126 * 13 11 10 28 28 C 1.52997 * 109.47535 * 239.99800 * 2 1 3 29 29 H 1.09000 * 109.47655 * 299.99863 * 1 2 3 30 30 H 1.08996 * 109.47118 * 60.00828 * 1 2 3 31 31 H 1.09006 * 109.47109 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46930 * 300.00084 * 4 2 1 33 33 H 1.09004 * 109.46877 * 180.02562 * 4 2 1 34 34 H 1.08996 * 109.47439 * 179.97438 * 5 4 2 35 35 H 1.09007 * 109.46991 * 300.00272 * 5 4 2 36 36 H 1.09004 * 109.46798 * 59.99892 * 6 5 4 37 37 H 1.08998 * 109.47642 * 180.02562 * 6 5 4 38 38 H 1.08999 * 109.47489 * 184.99566 * 9 7 6 39 39 H 1.09000 * 109.47317 * 305.00387 * 9 7 6 40 40 H 0.97004 * 119.99886 * 0.02562 * 10 9 7 41 41 H 1.09008 * 109.58736 * 246.20274 * 14 13 11 42 42 H 1.09004 * 109.58806 * 6.62828 * 14 13 11 43 43 H 1.08996 * 109.63553 * 294.86659 * 15 14 13 44 44 H 1.09001 * 109.45932 * 174.73686 * 15 14 13 45 45 H 1.08999 * 109.45978 * 58.53583 * 16 15 14 46 46 H 1.09000 * 109.46809 * 55.06441 * 17 16 15 47 47 H 1.09004 * 109.47058 * 175.06115 * 17 16 15 48 48 H 0.96996 * 119.99695 * 180.02562 * 21 20 18 49 49 H 1.08996 * 109.49625 * 301.41719 * 26 16 15 50 50 H 1.09001 * 109.52414 * 181.33457 * 26 16 15 51 51 H 1.09002 * 109.59255 * 353.37066 * 27 13 11 52 52 H 1.09001 * 109.58592 * 113.80024 * 27 13 11 53 53 H 1.08996 * 109.47430 * 59.99563 * 28 2 1 54 54 H 1.08998 * 109.47341 * 180.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.5301 -2.1636 1.2495 6 6 2.0401 -2.8850 0.0003 7 6 1.5301 -2.1638 -1.2491 8 1 0.4400 -2.1638 -1.2490 9 6 2.0406 -2.8848 -2.4982 10 7 1.4569 -4.2271 -2.5601 11 6 1.7662 -5.0500 -3.5816 12 8 2.4567 -4.6483 -4.4982 13 7 1.3101 -6.3183 -3.5871 14 6 0.3875 -6.7866 -2.5440 15 6 -0.8501 -7.3928 -3.2226 16 6 -0.4057 -8.4809 -4.2027 17 6 -1.6371 -9.1139 -4.8539 18 6 -2.4492 -9.8280 -3.8044 19 1 -2.1197 -9.8306 -2.7758 20 6 -3.6122 -10.4790 -4.1573 21 7 -4.0126 -10.4771 -5.4101 22 14 -4.6184 -11.3649 -2.8564 23 1 -5.6129 -10.4270 -2.2763 24 1 -5.3251 -12.5150 -3.4754 25 1 -3.7173 -11.8568 -1.7836 26 6 0.4826 -7.8631 -5.2851 27 6 1.7310 -7.2605 -4.6330 28 6 2.0400 -0.7213 -1.2492 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6766 -0.2072 2.1393 33 1 3.1300 -0.7207 1.2496 34 1 1.8937 -2.6775 2.1393 35 1 0.4400 -2.1637 1.2494 36 1 3.1301 -2.8849 0.0003 37 1 1.6765 -3.9125 0.0001 38 1 1.7522 -2.3220 -3.3860 39 1 3.1269 -2.9627 -2.4544 40 1 0.8477 -4.5236 -1.8659 41 1 0.8802 -7.5432 -1.9332 42 1 0.0877 -5.9466 -1.9173 43 1 -1.3896 -6.6149 -3.7628 44 1 -1.5021 -7.8291 -2.4658 45 1 0.1550 -9.2462 -3.6659 46 1 -2.2444 -8.3354 -5.3158 47 1 -1.3197 -9.8267 -5.6150 48 1 -4.8310 -10.9348 -5.6583 49 1 -0.0695 -7.0807 -5.8059 50 1 0.7796 -8.6338 -5.9964 51 1 2.3178 -6.7334 -5.3852 52 1 2.3309 -8.0550 -4.1891 53 1 1.6767 -0.2076 -2.1392 54 1 3.1300 -0.7216 -1.2489 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573115085.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:09 Heat of formation + Delta-G solvation = -88.784206 kcal Electronic energy + Delta-G solvation = -28189.809755 eV Core-core repulsion = 24544.824290 eV Total energy + Delta-G solvation = -3644.985466 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.51434 -40.20030 -38.79214 -36.11722 -35.67346 -34.02719 -32.78851 -32.27370 -31.62035 -29.75763 -27.61176 -27.01057 -25.86214 -24.18855 -23.48675 -23.17350 -22.09452 -21.42169 -20.49935 -19.42690 -19.07385 -18.38652 -17.31235 -16.79293 -16.52325 -16.36389 -15.94054 -15.44819 -15.29179 -15.22709 -15.04460 -14.74779 -14.67712 -14.55581 -14.32942 -14.09168 -13.85193 -13.50157 -13.35176 -13.15645 -12.96280 -12.85482 -12.73057 -12.49608 -12.43756 -12.36547 -12.29546 -12.14140 -11.86629 -11.79344 -11.74330 -11.41290 -11.25254 -11.12782 -10.98484 -10.87262 -10.82679 -10.80226 -10.50974 -10.18960 -9.41806 -8.14877 -6.24563 1.42720 1.43630 1.54279 1.68960 2.13268 2.44045 2.93615 3.18943 3.66333 3.78117 3.81433 3.93161 4.02185 4.09008 4.19600 4.21684 4.30656 4.33940 4.42486 4.50019 4.52149 4.53336 4.60026 4.68132 4.68529 4.75041 4.80579 4.85485 4.87709 4.92061 4.98022 5.01422 5.07734 5.10965 5.16985 5.20639 5.30997 5.32296 5.33235 5.34153 5.40033 5.41671 5.47204 5.49313 5.56137 5.57788 5.62253 5.69416 5.83023 5.91140 6.00484 6.30429 6.92596 6.96571 7.44280 7.55374 8.97220 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.014969 B = 0.002522 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.048382 B =11098.442394 C =12326.278012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.088 4.088 3 H 0.074 0.926 4 C -0.114 4.114 5 C -0.120 4.120 6 C -0.112 4.112 7 C -0.090 4.090 8 H 0.082 0.918 9 C 0.144 3.856 10 N -0.734 5.734 11 C 0.701 3.299 12 O -0.638 6.638 13 N -0.625 5.625 14 C 0.119 3.881 15 C -0.113 4.113 16 C -0.072 4.072 17 C 0.032 3.968 18 C -0.524 4.524 19 H 0.069 0.931 20 C -0.006 4.006 21 N -0.939 5.939 22 Si 0.961 3.039 23 H -0.274 1.274 24 H -0.289 1.289 25 H -0.259 1.259 26 C -0.122 4.122 27 C 0.137 3.863 28 C -0.105 4.105 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.050 0.950 39 H 0.056 0.944 40 H 0.406 0.594 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.042 0.958 44 H 0.078 0.922 45 H 0.065 0.935 46 H -0.018 1.018 47 H -0.015 1.015 48 H 0.260 0.740 49 H 0.041 0.959 50 H 0.071 0.929 51 H 0.078 0.922 52 H 0.082 0.918 53 H 0.063 0.937 54 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.848 19.597 15.853 28.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.107 4.107 3 H 0.092 0.908 4 C -0.151 4.151 5 C -0.157 4.157 6 C -0.150 4.150 7 C -0.108 4.108 8 H 0.101 0.899 9 C 0.020 3.980 10 N -0.392 5.392 11 C 0.403 3.597 12 O -0.521 6.521 13 N -0.362 5.362 14 C -0.004 4.004 15 C -0.151 4.151 16 C -0.090 4.090 17 C -0.005 4.005 18 C -0.562 4.562 19 H 0.087 0.913 20 C -0.203 4.203 21 N -0.580 5.580 22 Si 0.786 3.214 23 H -0.199 1.199 24 H -0.215 1.215 25 H -0.183 1.183 26 C -0.161 4.161 27 C 0.014 3.986 28 C -0.143 4.143 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.245 0.755 41 H 0.105 0.895 42 H 0.114 0.886 43 H 0.060 0.940 44 H 0.096 0.904 45 H 0.084 0.916 46 H 0.000 1.000 47 H 0.004 0.996 48 H 0.069 0.931 49 H 0.060 0.940 50 H 0.090 0.910 51 H 0.096 0.904 52 H 0.100 0.900 53 H 0.082 0.918 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 13.234 19.833 15.117 28.231 hybrid contribution -1.251 -0.846 -0.004 1.511 sum 11.983 18.987 15.113 27.065 Atomic orbital electron populations 1.21957 0.95286 1.02122 1.01619 1.21065 0.95927 0.99199 0.94466 0.90795 1.21566 1.00546 0.95538 0.97480 1.21560 1.01157 0.95650 0.97362 1.21582 1.00830 0.98804 0.93759 1.21375 1.01265 0.95327 0.92870 0.89932 1.21280 0.97484 0.80842 0.98356 1.45225 1.51754 1.15720 1.26539 1.16037 0.80056 0.80997 0.82649 1.90850 1.46410 1.76248 1.38551 1.47378 1.49105 1.09482 1.30214 1.21899 0.89296 1.00058 0.89099 1.21856 0.96911 0.97299 0.99033 1.21024 0.95751 0.96540 0.95723 1.19027 0.92741 0.93795 0.94955 1.21671 1.07077 1.32011 0.95475 0.91271 1.25999 0.99303 0.97639 0.97315 1.70125 1.24011 1.45076 1.18778 0.85499 0.78775 0.77953 0.79143 1.19929 1.21521 1.18265 1.21928 0.96293 0.99562 0.98288 1.21429 0.95784 0.91388 0.90003 1.21516 1.00886 0.93653 0.98267 0.92478 0.93030 0.92169 0.91619 0.92013 0.91659 0.91485 0.92061 0.91912 0.93123 0.92531 0.75453 0.89490 0.88593 0.93956 0.90398 0.91619 0.99973 0.99623 0.93112 0.93968 0.91002 0.90361 0.89994 0.91792 0.91529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.50 71.98 0.61 -1.01 16 2 C -0.09 -0.91 3.19 -10.79 -0.03 -0.94 16 3 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 4 C -0.11 -1.11 5.45 30.59 0.17 -0.94 16 5 C -0.12 -1.23 5.65 30.59 0.17 -1.06 16 6 C -0.11 -1.33 5.08 30.60 0.16 -1.18 16 7 C -0.09 -1.18 1.95 -10.79 -0.02 -1.21 16 8 H 0.08 1.09 6.43 -2.38 -0.02 1.08 16 9 C 0.14 2.80 5.07 86.38 0.44 3.24 16 10 N -0.73 -16.11 5.19 -478.53 -2.48 -18.60 16 11 C 0.70 21.23 8.30 179.06 1.49 22.72 16 12 O -0.64 -24.41 15.77 -3.99 -0.06 -24.48 16 13 N -0.63 -17.80 2.97 -836.06 -2.48 -20.28 16 14 C 0.12 2.87 6.42 86.51 0.56 3.43 16 15 C -0.11 -3.72 5.21 30.82 0.16 -3.56 16 16 C -0.07 -2.76 2.10 -10.76 -0.02 -2.78 16 17 C 0.03 1.64 4.45 29.85 0.13 1.77 16 18 C -0.52 -28.35 8.39 25.60 0.21 -28.13 16 19 H 0.07 3.48 7.06 -2.91 -0.02 3.46 16 20 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 21 N -0.94 -57.12 13.29 21.45 0.28 -56.84 16 22 Si 0.96 43.16 29.54 68.60 2.03 45.18 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 25 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 26 C -0.12 -4.23 5.36 30.67 0.16 -4.07 16 27 C 0.14 4.08 6.44 86.36 0.56 4.64 16 28 C -0.11 -1.25 4.73 30.59 0.14 -1.11 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.67 4.81 -2.38 -0.01 0.66 16 32 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 34 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.07 0.69 6.43 -2.38 -0.02 0.68 16 36 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.06 0.74 7.18 -2.39 -0.02 0.73 16 38 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 40 H 0.41 6.95 5.14 -92.71 -0.48 6.48 16 41 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 42 H 0.10 1.74 5.64 -2.38 -0.01 1.73 16 43 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.08 2.67 6.91 -2.39 -0.02 2.65 16 45 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 46 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 47 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 48 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 49 H 0.04 1.59 8.14 -2.39 -0.02 1.58 16 50 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 51 H 0.08 2.50 7.00 -2.39 -0.02 2.48 16 52 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 53 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 54 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -69.48 399.40 3.00 -66.47 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 0.38 Total: 18.58 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: 5.34 Total: -10.04 kcal Atomic # 7 Polarization: -91.04 SS G_CDS: -4.68 Total: -95.72 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.06 Total: -24.48 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -69.48 3.00 -66.47 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573115085.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.309 kcal (2) G-P(sol) polarization free energy of solvation -69.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds