Wall clock time and date at job start Tue Mar 31 2020 15:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47253 * 2 1 4 4 C 1.53002 * 109.47605 * 239.99350 * 2 1 3 5 5 C 1.52990 * 109.47191 * 180.02562 * 4 2 1 6 6 C 1.52991 * 109.47526 * 60.00214 * 5 4 2 7 7 C 1.53004 * 109.47207 * 299.99895 * 6 5 4 8 8 C 1.53001 * 109.46910 * 119.99233 * 2 1 3 9 9 H 1.09000 * 109.47230 * 60.00590 * 8 2 1 10 10 N 1.46497 * 109.47459 * 300.00202 * 8 2 1 11 11 C 1.34780 * 120.00000 * 154.99738 * 10 8 2 12 12 O 1.21283 * 119.99925 * 0.02562 * 11 10 8 13 13 C 1.50701 * 119.99669 * 180.02562 * 11 10 8 14 14 N 1.46906 * 109.46965 * 180.02562 * 13 11 10 15 15 C 1.46853 * 110.99832 * 294.21171 * 14 13 11 16 16 C 1.53033 * 109.52262 * 174.16246 * 15 14 13 17 17 C 1.53112 * 109.27992 * 59.17361 * 16 15 14 18 18 C 1.53004 * 109.52428 * 182.43862 * 17 16 15 19 19 C 1.50692 * 109.47268 * 294.68822 * 18 17 16 20 20 H 1.08004 * 120.00306 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00267 * 179.97438 * 19 18 17 22 22 N 1.31520 * 119.99880 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00294 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47238 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47135 * 120.00216 * 23 21 19 26 26 H 1.48503 * 109.46847 * 239.99559 * 23 21 19 27 27 C 1.53120 * 109.16707 * 302.34582 * 17 16 15 28 28 C 1.46844 * 110.99887 * 170.00048 * 14 13 11 29 29 H 1.08991 * 109.47251 * 300.00522 * 1 2 3 30 30 H 1.09000 * 109.46984 * 60.00618 * 1 2 3 31 31 H 1.09000 * 109.46692 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46923 * 59.99995 * 4 2 1 33 33 H 1.08998 * 109.46649 * 300.00320 * 4 2 1 34 34 H 1.09005 * 109.47176 * 299.99973 * 5 4 2 35 35 H 1.09005 * 109.47232 * 180.02562 * 5 4 2 36 36 H 1.09001 * 109.47292 * 179.97438 * 6 5 4 37 37 H 1.09000 * 109.47387 * 60.00101 * 6 5 4 38 38 H 1.09005 * 109.46942 * 299.99902 * 7 6 5 39 39 H 1.09000 * 109.47419 * 179.97438 * 7 6 5 40 40 H 0.97001 * 119.99894 * 335.00246 * 10 8 2 41 41 H 1.08993 * 109.47133 * 60.00295 * 13 11 10 42 42 H 1.08996 * 109.47320 * 300.00036 * 13 11 10 43 43 H 1.09001 * 109.46125 * 294.17808 * 15 14 13 44 44 H 1.09003 * 109.46462 * 54.14202 * 15 14 13 45 45 H 1.09007 * 109.50330 * 299.23709 * 16 15 14 46 46 H 1.09002 * 109.50417 * 179.12117 * 16 15 14 47 47 H 1.08999 * 109.57341 * 62.28839 * 17 16 15 48 48 H 1.09001 * 109.46712 * 54.68506 * 18 17 16 49 49 H 1.08997 * 109.47369 * 174.68461 * 18 17 16 50 50 H 0.97004 * 120.00293 * 179.97438 * 22 21 19 51 51 H 1.08996 * 109.49890 * 297.71825 * 27 17 16 52 52 H 1.08989 * 109.54077 * 177.61187 * 27 17 16 53 53 H 1.09000 * 109.46299 * 305.85220 * 28 14 13 54 54 H 1.08998 * 109.46010 * 65.83553 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 3.5700 -0.7219 -1.2487 6 6 4.0795 -1.4433 0.0005 7 6 3.5695 -0.7220 1.2497 8 6 2.0400 -0.7211 1.2494 9 1 1.6767 -1.7488 1.2495 10 7 1.5516 -0.0304 2.4454 11 6 1.4228 -0.7027 3.6065 12 8 1.7117 -1.8794 3.6611 13 6 0.9199 0.0077 4.8367 14 7 0.8711 -0.9360 5.9615 15 6 -0.1281 -1.9857 5.7247 16 6 -0.0501 -3.0276 6.8429 17 6 -0.3086 -2.3450 8.1889 18 6 -0.1720 -3.3699 9.3166 19 6 -1.2587 -4.4061 9.1881 20 1 -1.9754 -4.3400 8.3829 21 6 -1.3380 -5.4385 10.0985 22 7 -0.4649 -5.5193 11.0788 23 14 -2.6845 -6.7233 9.9388 24 1 -3.5315 -6.4089 8.7603 25 1 -2.0710 -8.0644 9.7645 26 1 -3.5219 -6.7177 11.1653 27 6 0.7154 -1.2244 8.3891 28 6 0.6152 -0.2347 7.2260 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6768 -0.2076 -2.1392 33 1 1.6768 -1.7490 -1.2490 34 1 3.9337 0.3057 -1.2486 35 1 3.9335 -1.2354 -2.1389 36 1 5.1696 -1.4441 0.0005 37 1 3.7159 -2.4709 0.0004 38 1 3.9332 0.3056 1.2499 39 1 3.9321 -1.2362 2.1398 40 1 1.3209 0.9107 2.4018 41 1 -0.0793 0.3994 4.6470 42 1 1.5921 0.8300 5.0817 43 1 -1.1239 -1.5426 5.7100 44 1 0.0697 -2.4659 4.7664 45 1 0.9411 -3.4810 6.8494 46 1 -0.8024 -3.7984 6.6753 47 1 -1.3145 -1.9252 8.1982 48 1 0.8020 -3.8548 9.2508 49 1 -0.2626 -2.8658 10.2787 50 1 -0.5209 -6.2454 11.7196 51 1 1.7186 -1.6495 8.4197 52 1 0.5107 -0.7066 9.3261 53 1 1.3528 0.5568 7.3581 54 1 -0.3842 0.2000 7.2044 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573917567.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:06 Heat of formation + Delta-G solvation = -93.714031 kcal Electronic energy + Delta-G solvation = -28150.418484 eV Core-core repulsion = 24505.219246 eV Total energy + Delta-G solvation = -3645.199239 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.30470 -40.03130 -38.89471 -36.05173 -35.15574 -34.22516 -33.39544 -31.68988 -31.15272 -30.00823 -27.85012 -26.91328 -25.24857 -24.01383 -23.46931 -22.33514 -22.09871 -21.42815 -20.64837 -20.45147 -18.46107 -17.91019 -17.54546 -16.67415 -16.49375 -16.32729 -15.72202 -15.61942 -15.33498 -15.20716 -15.04355 -14.88216 -14.74396 -14.30525 -14.23023 -14.03724 -13.76812 -13.56813 -13.35635 -13.27654 -12.91985 -12.88813 -12.83912 -12.60644 -12.47455 -12.35400 -12.17279 -12.13804 -12.01212 -11.81245 -11.69449 -11.45929 -11.38670 -11.26713 -11.16715 -10.99313 -10.72477 -10.57347 -10.46087 -9.93490 -9.17748 -8.18215 -6.27683 1.37144 1.38230 1.51134 1.73776 2.13005 2.40681 3.05519 3.14671 3.62906 3.77226 3.86097 3.97797 4.02685 4.06746 4.12346 4.17386 4.24828 4.34545 4.41268 4.43689 4.47510 4.49504 4.55742 4.56634 4.61459 4.69473 4.77752 4.78662 4.84055 4.84506 4.99176 5.00560 5.07748 5.10033 5.14203 5.15113 5.16817 5.26846 5.28437 5.37233 5.38359 5.41152 5.43060 5.43928 5.52974 5.57145 5.66088 5.80550 5.88432 6.10638 6.19700 6.29898 6.69297 6.88377 7.40302 7.41067 8.94009 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.019327 B = 0.002310 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.388773 B =12120.387589 C =12626.552851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 H 0.094 0.906 4 C -0.112 4.112 5 C -0.116 4.116 6 C -0.118 4.118 7 C -0.125 4.125 8 C 0.153 3.847 9 H 0.053 0.947 10 N -0.714 5.714 11 C 0.509 3.491 12 O -0.567 6.567 13 C 0.038 3.962 14 N -0.541 5.541 15 C 0.068 3.932 16 C -0.090 4.090 17 C -0.074 4.074 18 C 0.033 3.967 19 C -0.529 4.529 20 H 0.058 0.942 21 C -0.004 4.004 22 N -0.935 5.935 23 Si 0.962 3.038 24 H -0.263 1.263 25 H -0.280 1.280 26 H -0.276 1.276 27 C -0.108 4.108 28 C 0.069 3.931 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.038 0.962 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.048 0.952 38 H 0.078 0.922 39 H 0.036 0.964 40 H 0.415 0.585 41 H 0.085 0.915 42 H 0.132 0.868 43 H 0.033 0.967 44 H 0.073 0.927 45 H 0.036 0.964 46 H 0.050 0.950 47 H 0.053 0.947 48 H -0.017 1.017 49 H -0.010 1.010 50 H 0.262 0.738 51 H 0.048 0.952 52 H 0.069 0.931 53 H 0.099 0.901 54 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.042 20.172 -27.074 34.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 H 0.113 0.887 4 C -0.150 4.150 5 C -0.153 4.153 6 C -0.156 4.156 7 C -0.163 4.163 8 C 0.048 3.952 9 H 0.071 0.929 10 N -0.367 5.367 11 C 0.296 3.704 12 O -0.445 6.445 13 C -0.092 4.092 14 N -0.267 5.267 15 C -0.059 4.059 16 C -0.128 4.128 17 C -0.093 4.093 18 C -0.004 4.004 19 C -0.567 4.567 20 H 0.076 0.924 21 C -0.201 4.201 22 N -0.576 5.576 23 Si 0.786 3.214 24 H -0.187 1.187 25 H -0.206 1.206 26 H -0.202 1.202 27 C -0.146 4.146 28 C -0.058 4.058 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.097 0.903 39 H 0.055 0.945 40 H 0.252 0.748 41 H 0.102 0.898 42 H 0.150 0.850 43 H 0.051 0.949 44 H 0.091 0.909 45 H 0.055 0.945 46 H 0.068 0.932 47 H 0.071 0.929 48 H 0.001 0.999 49 H 0.009 0.991 50 H 0.071 0.929 51 H 0.067 0.933 52 H 0.088 0.912 53 H 0.117 0.883 54 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.735 19.015 -26.852 33.399 hybrid contribution -1.235 -0.750 0.625 1.574 sum 4.500 18.265 -26.227 32.275 Atomic orbital electron populations 1.21831 0.94575 1.01453 1.02592 1.21357 0.96003 1.00433 0.92879 0.88728 1.21580 0.95672 1.00464 0.97288 1.21542 0.95366 1.01296 0.97130 1.21502 1.00723 0.98974 0.94443 1.21854 0.95157 1.01486 0.97839 1.20933 0.93539 0.96309 0.84396 0.92899 1.45915 1.67396 1.14614 1.08763 1.21002 0.77070 0.87070 0.85252 1.90710 1.50439 1.18176 1.85158 1.22056 1.03086 0.95312 0.88774 1.61513 1.50138 1.12837 1.02186 1.22050 0.92097 0.92921 0.98853 1.21342 1.00032 0.97200 0.94199 1.21096 0.97818 0.95458 0.94889 1.19011 0.94821 0.93400 0.93128 1.21676 1.13583 1.09958 1.11441 0.92361 1.25984 0.98649 1.00437 0.95078 1.70117 1.37806 1.33340 1.16366 0.85449 0.79006 0.78533 0.78383 1.18657 1.20632 1.20158 1.21609 0.98766 0.96246 0.98007 1.22080 1.00662 0.95496 0.87554 0.92210 0.91028 0.94244 0.89864 0.92906 0.90690 0.91137 0.91308 0.93314 0.90303 0.94498 0.74834 0.89758 0.85027 0.94890 0.90878 0.94507 0.93171 0.92857 0.99908 0.99129 0.92933 0.93297 0.91214 0.88286 0.93751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.04 71.98 0.65 -0.88 16 2 C -0.09 -0.89 2.30 -10.79 -0.02 -0.92 16 3 H 0.09 0.63 8.14 -2.39 -0.02 0.62 16 4 C -0.11 -1.10 5.20 30.59 0.16 -0.94 16 5 C -0.12 -1.12 5.92 30.59 0.18 -0.94 16 6 C -0.12 -1.69 5.92 30.59 0.18 -1.51 16 7 C -0.12 -2.09 5.49 30.58 0.17 -1.92 16 8 C 0.15 2.53 1.90 44.98 0.09 2.62 16 9 H 0.05 1.27 7.58 -2.39 -0.02 1.25 16 10 N -0.71 -11.00 4.38 -442.60 -1.94 -12.94 16 11 C 0.51 12.10 7.47 87.66 0.65 12.75 16 12 O -0.57 -19.91 13.99 -3.04 -0.04 -19.96 16 13 C 0.04 0.75 5.45 85.56 0.47 1.22 16 14 N -0.54 -15.92 4.40 -900.91 -3.96 -19.88 16 15 C 0.07 2.36 5.11 86.32 0.44 2.80 16 16 C -0.09 -3.86 5.15 30.64 0.16 -3.70 16 17 C -0.07 -3.24 2.20 -10.71 -0.02 -3.27 16 18 C 0.03 1.87 4.45 29.85 0.13 2.00 16 19 C -0.53 -31.38 8.44 25.60 0.22 -31.17 16 20 H 0.06 3.34 7.08 -2.91 -0.02 3.32 16 21 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 22 N -0.94 -59.37 13.29 21.45 0.28 -59.09 16 23 Si 0.96 46.32 29.54 68.60 2.03 48.34 16 24 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 25 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 26 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 27 C -0.11 -3.88 5.38 30.65 0.16 -3.71 16 28 C 0.07 1.85 5.46 86.33 0.47 2.32 16 29 H 0.06 0.58 7.44 -2.39 -0.02 0.57 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 35 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.41 3.32 8.39 -92.71 -0.78 2.54 16 41 H 0.08 1.27 8.12 -2.39 -0.02 1.25 16 42 H 0.13 1.76 7.99 -2.39 -0.02 1.74 16 43 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.07 2.71 5.78 -2.39 -0.01 2.70 16 45 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 46 H 0.05 2.30 7.05 -2.39 -0.02 2.28 16 47 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 48 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 49 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 50 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 51 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 52 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 53 H 0.10 2.05 8.01 -2.39 -0.02 2.03 16 54 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -76.92 407.71 0.97 -75.95 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 0.06 Total: 12.63 kcal Atomic # 6 Polarization: -29.60 SS G_CDS: 4.54 Total: -25.06 kcal Atomic # 7 Polarization: -86.29 SS G_CDS: -5.62 Total: -91.91 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.04 Total: -19.96 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.34 kcal Total: -76.92 0.97 -75.95 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573917567.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.766 kcal (2) G-P(sol) polarization free energy of solvation -76.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds