Wall clock time and date at job start Tue Mar 31 2020 15:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47138 * 2 1 4 4 C 1.53001 * 109.47366 * 120.00279 * 2 1 3 5 5 C 1.52991 * 109.47418 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.47086 * 300.00082 * 5 4 2 7 7 C 1.52998 * 109.47377 * 59.99850 * 6 5 4 8 8 C 1.52999 * 109.47171 * 300.00335 * 7 6 5 9 9 H 1.08999 * 109.46834 * 299.99931 * 8 7 6 10 10 N 1.46497 * 109.47398 * 179.97438 * 8 7 6 11 11 C 1.34777 * 119.99928 * 84.99807 * 10 8 7 12 12 O 1.21278 * 119.99873 * 359.97438 * 11 10 8 13 13 C 1.50697 * 119.99741 * 180.02562 * 11 10 8 14 14 N 1.46897 * 109.47358 * 186.26977 * 13 11 10 15 15 C 1.46848 * 110.99962 * 66.38515 * 14 13 11 16 16 C 1.53036 * 109.52366 * 185.84194 * 15 14 13 17 17 C 1.53114 * 109.28038 * 300.82123 * 16 15 14 18 18 C 1.53004 * 109.52628 * 177.55955 * 17 16 15 19 19 C 1.50697 * 109.47151 * 175.12928 * 18 17 16 20 20 H 1.07994 * 120.00593 * 359.97438 * 19 18 17 21 21 C 1.37883 * 119.99763 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99931 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 119.99978 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47341 * 60.00103 * 23 21 19 25 25 H 1.48501 * 109.47229 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47268 * 300.00251 * 23 21 19 27 27 C 1.53121 * 109.21345 * 57.62554 * 17 16 15 28 28 C 1.46847 * 111.00369 * 190.60107 * 14 13 11 29 29 H 1.09001 * 109.46634 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46837 * 299.99411 * 1 2 3 31 31 H 1.08996 * 109.47037 * 59.99975 * 1 2 3 32 32 H 1.08998 * 109.46998 * 299.99905 * 4 2 1 33 33 H 1.08999 * 109.47220 * 59.99771 * 4 2 1 34 34 H 1.09008 * 109.47157 * 59.99867 * 5 4 2 35 35 H 1.09000 * 109.47487 * 180.02562 * 5 4 2 36 36 H 1.09002 * 109.47353 * 179.97438 * 6 5 4 37 37 H 1.08999 * 109.46922 * 299.99739 * 6 5 4 38 38 H 1.08998 * 109.47315 * 180.02562 * 7 6 5 39 39 H 1.09008 * 109.47031 * 60.00115 * 7 6 5 40 40 H 0.97004 * 119.99527 * 264.99838 * 10 8 7 41 41 H 1.09001 * 109.47097 * 66.27316 * 13 11 10 42 42 H 1.09002 * 109.47609 * 306.27240 * 13 11 10 43 43 H 1.09001 * 109.45655 * 65.82817 * 15 14 13 44 44 H 1.08998 * 109.46579 * 305.85891 * 15 14 13 45 45 H 1.09001 * 109.50179 * 180.88188 * 16 15 14 46 46 H 1.08995 * 109.50436 * 60.76854 * 16 15 14 47 47 H 1.08999 * 109.52569 * 297.69077 * 17 16 15 48 48 H 1.09001 * 109.47128 * 55.12681 * 18 17 16 49 49 H 1.08999 * 109.47072 * 295.12959 * 18 17 16 50 50 H 0.96996 * 120.00162 * 180.02562 * 22 21 19 51 51 H 1.09002 * 109.50570 * 62.31569 * 27 17 16 52 52 H 1.08997 * 109.50941 * 182.43904 * 27 17 16 53 53 H 1.09003 * 109.45888 * 294.17452 * 28 14 13 54 54 H 1.08992 * 109.46446 * 54.15476 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5700 -0.7219 1.2489 6 6 4.0795 -1.4434 -0.0004 7 6 3.5695 -0.7222 -1.2496 8 6 2.0395 -0.7216 -1.2493 9 1 1.6758 -1.7491 -1.2491 10 7 1.5512 -0.0304 -2.4451 11 6 1.4219 -0.7024 -3.6063 12 8 1.7104 -1.8791 -3.6612 13 6 0.9201 0.0087 -4.8365 14 7 0.7272 -0.9642 -5.9200 15 6 -0.3576 -1.9006 -5.5995 16 6 -0.4337 -2.9836 -6.6781 17 6 -0.6867 -2.3263 -8.0376 18 6 -0.7033 -3.3986 -9.1289 19 6 -1.0704 -2.7679 -10.4474 20 1 -1.2722 -1.7084 -10.5016 21 6 -1.1487 -3.5436 -11.5846 22 7 -0.9034 -4.8340 -11.5185 23 14 -1.6044 -2.7620 -13.2188 24 1 -0.6055 -1.7188 -13.5642 25 1 -1.6203 -3.8028 -14.2779 26 1 -2.9502 -2.1431 -13.1133 27 6 0.4304 -1.3197 -8.3264 28 6 0.4824 -0.2857 -7.1992 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 1.6768 -0.2075 2.1392 33 1 1.6768 -1.7490 1.2492 34 1 3.9338 0.3057 1.2487 35 1 3.9334 -1.2361 2.1386 36 1 5.1695 -1.4435 -0.0009 37 1 3.7158 -2.4710 -0.0002 38 1 3.9321 -1.2365 -2.1396 39 1 3.9333 0.3054 -1.2498 40 1 1.3208 0.9108 -2.4011 41 1 1.6492 0.7575 -5.1461 42 1 -0.0288 0.4963 -4.6128 43 1 -1.3036 -1.3605 -5.5598 44 1 -0.1633 -2.3642 -4.6324 45 1 -1.2490 -3.6696 -6.4481 46 1 0.5071 -3.5332 -6.7090 47 1 -1.6465 -1.8101 -8.0196 48 1 -1.4370 -4.1638 -8.8753 49 1 0.2842 -3.8536 -9.2062 50 1 -0.9581 -5.3797 -12.3186 51 1 1.3852 -1.8423 -8.3840 52 1 0.2320 -0.8175 -9.2732 53 1 -0.4675 0.2467 -7.1519 54 1 1.2869 0.4234 -7.3939 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573917569.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:13 Heat of formation + Delta-G solvation = -94.057054 kcal Electronic energy + Delta-G solvation = -28064.275947 eV Core-core repulsion = 24419.061834 eV Total energy + Delta-G solvation = -3645.214113 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.29806 -40.03141 -38.89991 -36.04997 -35.14873 -34.22052 -33.39247 -31.70835 -31.15211 -30.00642 -27.82662 -26.91073 -25.30344 -23.95681 -23.48686 -22.34836 -22.10156 -21.41707 -20.64174 -20.45254 -18.42825 -17.92061 -17.56090 -16.69230 -16.45836 -16.33453 -15.70046 -15.61616 -15.31827 -15.20354 -15.09128 -14.86480 -14.73087 -14.29635 -14.16717 -14.08950 -13.80059 -13.64989 -13.34919 -13.20100 -12.92360 -12.83823 -12.76524 -12.60543 -12.45128 -12.43431 -12.18391 -12.14443 -12.03387 -11.81118 -11.67571 -11.45453 -11.38946 -11.27913 -11.14855 -10.89284 -10.85525 -10.51298 -10.50728 -9.93882 -9.17914 -8.15716 -6.26215 1.40198 1.43990 1.51518 1.73512 2.12532 2.42944 3.04475 3.16936 3.62957 3.77268 3.85472 3.97307 4.02179 4.05663 4.11562 4.17486 4.24779 4.33591 4.40389 4.43591 4.47528 4.49640 4.55745 4.56645 4.61184 4.67902 4.75298 4.78772 4.83223 4.84606 4.97115 5.00607 5.06914 5.07856 5.14125 5.16024 5.16961 5.26901 5.28566 5.36957 5.37360 5.41235 5.41870 5.46648 5.52666 5.57320 5.65735 5.80692 5.88953 6.11279 6.17208 6.30121 6.69006 6.89850 7.40405 7.42031 8.96338 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.033005 B = 0.002069 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.160866 B =13530.674738 C =13649.811086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 H 0.094 0.906 4 C -0.112 4.112 5 C -0.116 4.116 6 C -0.118 4.118 7 C -0.125 4.125 8 C 0.153 3.847 9 H 0.054 0.946 10 N -0.714 5.714 11 C 0.510 3.490 12 O -0.567 6.567 13 C 0.038 3.962 14 N -0.542 5.542 15 C 0.072 3.928 16 C -0.104 4.104 17 C -0.073 4.073 18 C 0.033 3.967 19 C -0.528 4.528 20 H 0.065 0.935 21 C -0.007 4.007 22 N -0.938 5.938 23 Si 0.966 3.034 24 H -0.265 1.265 25 H -0.287 1.287 26 H -0.266 1.266 27 C -0.096 4.096 28 C 0.069 3.931 29 H 0.039 0.961 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.049 0.951 38 H 0.037 0.963 39 H 0.078 0.922 40 H 0.414 0.586 41 H 0.129 0.871 42 H 0.086 0.914 43 H 0.038 0.962 44 H 0.071 0.929 45 H 0.055 0.945 46 H 0.042 0.958 47 H 0.054 0.946 48 H -0.018 1.018 49 H -0.018 1.018 50 H 0.261 0.739 51 H 0.041 0.959 52 H 0.065 0.935 53 H 0.045 0.955 54 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.138 18.153 28.437 34.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 H 0.112 0.888 4 C -0.150 4.150 5 C -0.154 4.154 6 C -0.156 4.156 7 C -0.164 4.164 8 C 0.049 3.951 9 H 0.072 0.928 10 N -0.367 5.367 11 C 0.297 3.703 12 O -0.444 6.444 13 C -0.092 4.092 14 N -0.267 5.267 15 C -0.055 4.055 16 C -0.142 4.142 17 C -0.092 4.092 18 C -0.004 4.004 19 C -0.566 4.566 20 H 0.084 0.916 21 C -0.204 4.204 22 N -0.579 5.579 23 Si 0.790 3.210 24 H -0.190 1.190 25 H -0.212 1.212 26 H -0.191 1.191 27 C -0.133 4.133 28 C -0.058 4.058 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.096 0.904 40 H 0.251 0.749 41 H 0.147 0.853 42 H 0.103 0.897 43 H 0.056 0.944 44 H 0.089 0.911 45 H 0.074 0.926 46 H 0.061 0.939 47 H 0.073 0.927 48 H 0.001 0.999 49 H 0.001 0.999 50 H 0.070 0.930 51 H 0.060 0.940 52 H 0.083 0.917 53 H 0.063 0.937 54 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.769 16.893 28.245 33.601 hybrid contribution -0.943 0.027 -1.203 1.529 sum 5.826 16.921 27.042 32.427 Atomic orbital electron populations 1.21833 0.94566 1.01489 1.02560 1.21361 0.96017 1.00412 0.92924 0.88815 1.21578 0.95661 1.00489 0.97255 1.21546 0.95378 1.01269 0.97165 1.21504 1.00717 0.99000 0.94401 1.21866 0.95163 1.01472 0.97876 1.20946 0.93525 0.96332 0.84346 0.92765 1.45933 1.67408 1.14608 1.08795 1.20962 0.77081 0.87068 0.85175 1.90713 1.50425 1.18112 1.85191 1.22057 1.03219 0.94552 0.89422 1.61477 1.44950 1.17975 1.02321 1.21959 0.91468 0.93803 0.98287 1.21539 1.00312 0.97604 0.94777 1.21085 0.97887 0.96503 0.93677 1.19008 0.94051 0.93701 0.93617 1.21615 1.45939 0.95108 0.93905 0.91650 1.26053 0.95541 0.95328 1.03499 1.70125 1.51004 1.06651 1.30104 0.85489 0.79246 0.78028 0.78202 1.18957 1.21249 1.19059 1.21435 0.97692 0.96530 0.97693 1.22097 1.00801 0.95310 0.87611 0.94154 0.91066 0.92257 0.89905 0.92825 0.90756 0.91118 0.91315 0.93218 0.94447 0.90374 0.74873 0.85348 0.89667 0.94403 0.91103 0.92602 0.93926 0.92720 0.99936 0.99941 0.93004 0.93986 0.91656 0.93728 0.88798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.03 71.98 0.65 -0.83 16 2 C -0.09 -0.86 2.30 -10.79 -0.02 -0.89 16 3 H 0.09 0.61 8.14 -2.39 -0.02 0.60 16 4 C -0.11 -1.05 5.20 30.59 0.16 -0.89 16 5 C -0.12 -1.08 5.92 30.59 0.18 -0.90 16 6 C -0.12 -1.62 5.92 30.59 0.18 -1.44 16 7 C -0.13 -2.03 5.49 30.59 0.17 -1.86 16 8 C 0.15 2.46 1.90 44.99 0.09 2.54 16 9 H 0.05 1.26 7.58 -2.39 -0.02 1.24 16 10 N -0.71 -10.80 4.38 -442.54 -1.94 -12.74 16 11 C 0.51 11.92 7.32 87.66 0.64 12.56 16 12 O -0.57 -19.51 14.38 -3.02 -0.04 -19.55 16 13 C 0.04 0.75 5.45 85.56 0.47 1.22 16 14 N -0.54 -15.95 4.35 -900.92 -3.92 -19.86 16 15 C 0.07 2.36 5.12 86.33 0.44 2.80 16 16 C -0.10 -4.17 5.38 30.64 0.16 -4.01 16 17 C -0.07 -3.19 2.20 -10.71 -0.02 -3.21 16 18 C 0.03 1.86 4.45 29.85 0.13 1.99 16 19 C -0.53 -30.60 8.44 25.60 0.22 -30.38 16 20 H 0.07 3.56 7.07 -2.91 -0.02 3.54 16 21 C -0.01 -0.43 5.46 84.66 0.46 0.03 16 22 N -0.94 -59.44 13.29 21.45 0.28 -59.15 16 23 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 24 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 25 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 27 C -0.10 -3.70 5.15 30.65 0.16 -3.54 16 28 C 0.07 1.95 5.46 86.33 0.47 2.43 16 29 H 0.04 0.54 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.06 0.57 7.44 -2.39 -0.02 0.55 16 32 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.07 0.54 8.14 -2.38 -0.02 0.53 16 35 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.08 1.00 8.14 -2.38 -0.02 0.99 16 40 H 0.41 3.30 8.39 -92.71 -0.78 2.52 16 41 H 0.13 1.86 7.98 -2.39 -0.02 1.84 16 42 H 0.09 1.25 8.12 -2.39 -0.02 1.23 16 43 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.07 2.42 6.06 -2.39 -0.01 2.41 16 45 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 48 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 49 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 50 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 51 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 52 H 0.06 2.61 7.04 -2.39 -0.02 2.59 16 53 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 54 H 0.09 2.19 8.01 -2.39 -0.02 2.17 16 Total: -1.00 -75.86 408.15 1.00 -74.86 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.06 Total: 13.58 kcal Atomic # 6 Polarization: -28.91 SS G_CDS: 4.53 Total: -24.37 kcal Atomic # 7 Polarization: -86.18 SS G_CDS: -5.57 Total: -91.75 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.04 Total: -19.55 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -75.86 1.00 -74.86 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573917569.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.202 kcal (2) G-P(sol) polarization free energy of solvation -75.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds