Wall clock time and date at job start Tue Mar 31 2020 15:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46494 * 2 1 4 4 C 1.50703 * 109.46981 * 119.99643 * 2 1 3 5 5 O 1.21280 * 119.99528 * 94.15516 * 4 2 1 6 6 N 1.34776 * 120.00201 * 274.15193 * 4 2 1 7 7 C 1.46925 * 120.62766 * 4.76198 * 6 4 2 8 8 C 1.53630 * 108.53651 * 126.37350 * 7 6 4 9 9 C 1.53029 * 109.24490 * 54.85568 * 8 7 6 10 10 C 1.53005 * 109.46454 * 178.48981 * 9 8 7 11 11 C 1.50700 * 109.46962 * 295.06991 * 10 9 8 12 12 H 1.08001 * 119.99770 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00037 * 179.97438 * 11 10 9 14 14 N 1.31511 * 119.99887 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00013 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47327 * 60.00636 * 15 13 11 17 17 H 1.48506 * 109.47358 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47484 * 300.00524 * 15 13 11 19 19 C 1.53048 * 109.54021 * 298.51306 * 9 8 7 20 20 C 1.46923 * 120.62992 * 185.04929 * 6 4 2 21 21 N 1.46900 * 109.47463 * 240.00010 * 2 1 3 22 22 C 1.47846 * 110.99844 * 49.39062 * 21 2 1 23 23 H 1.09005 * 110.37442 * 27.42529 * 22 21 2 24 24 C 1.52999 * 110.37488 * 265.19425 * 22 21 2 25 25 C 1.54905 * 104.79626 * 146.36682 * 22 21 2 26 26 C 1.55150 * 101.65028 * 322.92672 * 25 22 21 27 27 C 1.47435 * 111.00207 * 170.23430 * 21 2 1 28 28 H 1.08998 * 109.89113 * 117.17068 * 27 21 2 29 29 C 1.53001 * 109.88752 * 356.14750 * 27 21 2 30 30 H 1.09007 * 109.46263 * 175.66095 * 1 2 3 31 31 H 1.08997 * 109.47011 * 295.65835 * 1 2 3 32 32 H 1.08997 * 109.46933 * 55.66711 * 1 2 3 33 33 H 1.09001 * 109.59228 * 246.20073 * 7 6 4 34 34 H 1.09002 * 109.59268 * 6.63577 * 7 6 4 35 35 H 1.09004 * 109.63084 * 294.86276 * 8 7 6 36 36 H 1.09006 * 109.42786 * 174.72478 * 8 7 6 37 37 H 1.09003 * 109.46267 * 58.53155 * 9 8 7 38 38 H 1.08999 * 109.46709 * 55.06811 * 10 9 8 39 39 H 1.08995 * 109.47278 * 175.07006 * 10 9 8 40 40 H 0.97007 * 119.99840 * 179.97438 * 14 13 11 41 41 H 1.08999 * 109.48794 * 301.41077 * 19 9 8 42 42 H 1.09000 * 109.49493 * 181.31440 * 19 9 8 43 43 H 1.09001 * 109.58489 * 353.37286 * 20 6 4 44 44 H 1.09002 * 109.58798 * 113.79542 * 20 6 4 45 45 H 1.09009 * 109.47270 * 55.85559 * 24 22 21 46 46 H 1.08997 * 109.47327 * 175.85809 * 24 22 21 47 47 H 1.09002 * 109.47192 * 295.85843 * 24 22 21 48 48 H 1.08994 * 110.99268 * 81.01950 * 25 22 21 49 49 H 1.08996 * 110.99045 * 204.84151 * 25 22 21 50 50 H 1.08996 * 110.70572 * 277.27468 * 26 25 22 51 51 H 1.08999 * 110.70167 * 154.03284 * 26 25 22 52 52 H 1.09000 * 109.47305 * 66.36373 * 29 27 21 53 53 H 1.09007 * 109.47135 * 186.36115 * 29 27 21 54 54 H 1.08998 * 109.47619 * 306.36491 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.3062 -1.8907 1.1799 6 7 2.1773 -0.0339 2.3872 7 6 1.7524 1.3686 2.4924 8 6 0.7995 1.5018 3.6900 9 6 1.4868 0.9578 4.9444 10 6 0.5562 1.1225 6.1477 11 6 0.3364 2.5891 6.4158 12 1 0.8132 3.3296 5.7907 13 6 -0.4732 2.9855 7.4590 14 7 -1.0534 2.0837 8.2204 15 14 -0.7450 4.8034 7.7916 16 1 -1.3606 5.4384 6.5987 17 1 -1.6484 4.9633 8.9595 18 1 0.5580 5.4538 8.0816 19 6 1.8097 -0.5253 4.7488 20 6 2.7689 -0.6831 3.5650 21 7 2.0198 -0.6925 -1.1994 22 6 1.3494 -0.1845 -2.4153 23 1 1.0324 0.8483 -2.2705 24 6 0.1487 -1.0645 -2.7687 25 6 2.4261 -0.2701 -3.5257 26 6 3.7114 0.1136 -2.7461 27 6 3.4748 -0.5133 -1.3559 28 1 3.9764 -1.4788 -1.2916 29 6 4.0042 0.4216 -0.2666 30 1 -0.3632 -1.0248 -0.0778 31 1 -0.3633 0.4450 0.9263 32 1 -0.3633 0.5796 -0.8486 33 1 2.6248 2.0044 2.6437 34 1 1.2366 1.6638 1.5787 35 1 -0.1109 0.9336 3.4986 36 1 0.5488 2.5521 3.8389 37 1 2.4097 1.5101 5.1213 38 1 -0.4002 0.6446 5.9354 39 1 1.0085 0.6569 7.0233 40 1 -1.6228 2.3626 8.9546 41 1 0.8898 -1.0743 4.5475 42 1 2.2781 -0.9177 5.6515 43 1 2.9241 -1.7422 3.3590 44 1 3.7225 -0.2113 3.8019 45 1 -0.5267 -1.1176 -1.9147 46 1 -0.3772 -0.6361 -3.6218 47 1 0.4947 -2.0669 -3.0211 48 1 2.4979 -1.2826 -3.9228 49 1 2.2238 0.4465 -4.3217 50 1 3.8067 1.1967 -2.6693 51 1 4.5927 -0.3195 -3.2191 52 1 3.9007 -0.0588 0.7063 53 1 5.0557 0.6394 -0.4542 54 1 3.4336 1.3502 -0.2757 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573969112.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:52 Heat of formation + Delta-G solvation = -51.776204 kcal Electronic energy + Delta-G solvation = -29602.318380 eV Core-core repulsion = 25958.937701 eV Total energy + Delta-G solvation = -3643.380678 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.01888 -40.14975 -38.49289 -35.70377 -34.75370 -33.98748 -33.68073 -31.99106 -29.97913 -29.62539 -29.02335 -26.69534 -25.40627 -24.50660 -24.12427 -23.10253 -21.88274 -21.33831 -20.32636 -19.44171 -18.43029 -18.32416 -17.35159 -16.98139 -16.59529 -16.50047 -16.25042 -15.29138 -15.20809 -14.99582 -14.84850 -14.50432 -14.42740 -14.26654 -14.11603 -13.88382 -13.78658 -13.46168 -13.33525 -13.11620 -13.03132 -12.95540 -12.79174 -12.69711 -12.49054 -12.34627 -12.32529 -12.23606 -12.11982 -12.01552 -11.76821 -11.65020 -11.56005 -11.40766 -11.33948 -11.08941 -10.84678 -10.60740 -10.50325 -9.56101 -9.14951 -8.14994 -6.24895 1.42727 1.45093 1.52508 1.65880 1.95546 2.43940 2.91793 3.18773 3.45196 3.65817 3.77867 3.87629 3.93873 3.97506 4.05161 4.11603 4.13643 4.20754 4.22520 4.38498 4.39358 4.41491 4.50460 4.54256 4.64463 4.65794 4.67517 4.73096 4.80673 4.83002 4.88862 4.90594 4.96434 4.97494 5.02270 5.07600 5.13400 5.13834 5.16970 5.30258 5.31878 5.33550 5.41211 5.41690 5.49899 5.55703 5.61472 5.82537 5.90501 6.04485 6.14445 6.29676 6.49931 6.92052 7.25787 7.44068 8.96905 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.021013 B = 0.002883 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.199728 B = 9709.275590 C =10047.158620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.062 3.938 3 H 0.090 0.910 4 C 0.526 3.474 5 O -0.573 6.573 6 N -0.611 5.611 7 C 0.111 3.889 8 C -0.112 4.112 9 C -0.071 4.071 10 C 0.033 3.967 11 C -0.526 4.526 12 H 0.069 0.931 13 C -0.004 4.004 14 N -0.939 5.939 15 Si 0.961 3.039 16 H -0.263 1.263 17 H -0.291 1.291 18 H -0.267 1.267 19 C -0.121 4.121 20 C 0.121 3.879 21 N -0.520 5.520 22 C 0.066 3.934 23 H 0.068 0.932 24 C -0.142 4.142 25 C -0.120 4.120 26 C -0.131 4.131 27 C 0.069 3.931 28 H 0.061 0.939 29 C -0.175 4.175 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.045 0.955 36 H 0.077 0.923 37 H 0.064 0.936 38 H -0.017 1.017 39 H -0.016 1.016 40 H 0.260 0.740 41 H 0.042 0.958 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.057 0.943 46 H 0.075 0.925 47 H 0.047 0.953 48 H 0.070 0.930 49 H 0.094 0.906 50 H 0.080 0.920 51 H 0.081 0.919 52 H 0.044 0.956 53 H 0.075 0.925 54 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.066 0.186 -25.169 26.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.050 4.050 3 H 0.107 0.893 4 C 0.315 3.685 5 O -0.451 6.451 6 N -0.345 5.345 7 C -0.011 4.011 8 C -0.150 4.150 9 C -0.090 4.090 10 C -0.004 4.004 11 C -0.564 4.564 12 H 0.087 0.913 13 C -0.201 4.201 14 N -0.580 5.580 15 Si 0.785 3.215 16 H -0.188 1.188 17 H -0.217 1.217 18 H -0.192 1.192 19 C -0.159 4.159 20 C -0.002 4.002 21 N -0.246 5.246 22 C -0.041 4.041 23 H 0.086 0.914 24 C -0.200 4.200 25 C -0.158 4.158 26 C -0.169 4.169 27 C -0.039 4.039 28 H 0.079 0.921 29 C -0.233 4.233 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.103 0.897 34 H 0.121 0.879 35 H 0.064 0.936 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.001 0.999 39 H 0.002 0.998 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.099 0.901 45 H 0.076 0.924 46 H 0.093 0.907 47 H 0.066 0.934 48 H 0.089 0.911 49 H 0.112 0.888 50 H 0.099 0.901 51 H 0.100 0.900 52 H 0.062 0.938 53 H 0.094 0.906 54 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.983 -0.989 -24.983 26.246 hybrid contribution -0.295 1.060 1.236 1.655 sum 7.688 0.071 -23.746 24.960 Atomic orbital electron populations 1.22068 0.91680 1.03060 1.03713 1.21847 0.97293 0.96881 0.88978 0.89292 1.20780 0.76282 0.86738 0.84651 1.90646 1.52121 1.17213 1.85169 1.48260 1.61683 1.13607 1.10935 1.22069 0.98868 0.80737 0.99464 1.21849 0.97523 1.01978 0.93644 1.21019 0.98477 0.94216 0.95270 1.19008 0.93295 0.95513 0.92563 1.21641 1.27921 0.93332 1.13510 0.91268 1.25983 0.95823 1.02180 0.96139 1.70116 1.32850 1.35516 1.19492 0.85566 0.78253 0.79875 0.77760 1.18780 1.21661 1.19171 1.21895 0.98919 0.97285 0.97815 1.21493 0.95917 0.98579 0.84174 1.63415 1.04162 1.55725 1.01318 1.22682 0.95275 0.97629 0.88517 0.91430 1.21944 0.96811 0.99502 1.01740 1.22748 0.93337 1.02615 0.97059 1.22844 0.99044 1.01199 0.93801 1.22349 0.87833 0.98099 0.95648 0.92058 1.22508 1.02602 0.99670 0.98474 0.92414 0.91566 0.88776 0.89667 0.87936 0.93627 0.90410 0.91785 0.99876 0.99804 0.93093 0.93887 0.91301 0.90664 0.90101 0.92444 0.90655 0.93352 0.91100 0.88766 0.90109 0.89990 0.93752 0.90592 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 7.36 71.98 0.53 -2.47 16 2 C 0.06 1.36 1.03 44.17 0.05 1.40 16 3 H 0.09 1.61 4.25 -2.39 -0.01 1.60 16 4 C 0.53 15.37 3.78 87.66 0.33 15.71 16 5 O -0.57 -21.52 15.92 -3.03 -0.05 -21.57 16 6 N -0.61 -16.94 2.69 -818.07 -2.20 -19.14 16 7 C 0.11 2.66 5.98 86.51 0.52 3.18 16 8 C -0.11 -3.65 5.21 30.82 0.16 -3.49 16 9 C -0.07 -2.72 2.10 -10.77 -0.02 -2.74 16 10 C 0.03 1.70 4.45 29.85 0.13 1.83 16 11 C -0.53 -28.35 8.39 25.60 0.21 -28.14 16 12 H 0.07 3.46 7.06 -2.91 -0.02 3.44 16 13 C 0.00 -0.24 5.46 84.65 0.46 0.23 16 14 N -0.94 -57.01 13.29 21.45 0.28 -56.72 16 15 Si 0.96 42.99 29.54 68.60 2.03 45.01 16 16 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 17 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 18 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 19 C -0.12 -4.18 5.36 30.67 0.16 -4.01 16 20 C 0.12 3.59 6.44 86.36 0.56 4.14 16 21 N -0.52 -11.31 4.35 -815.29 -3.54 -14.86 16 22 C 0.07 1.04 2.39 45.38 0.11 1.15 16 23 H 0.07 0.91 7.02 -2.38 -0.02 0.89 16 24 C -0.14 -2.21 9.15 71.98 0.66 -1.55 16 25 C -0.12 -1.51 6.50 31.98 0.21 -1.30 16 26 C -0.13 -1.74 6.47 31.78 0.21 -1.54 16 27 C 0.07 1.37 3.69 45.26 0.17 1.54 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 C -0.17 -3.30 7.74 71.98 0.56 -2.74 16 30 H 0.06 1.37 7.03 -2.38 -0.02 1.36 16 31 H 0.07 1.39 7.26 -2.39 -0.02 1.37 16 32 H 0.09 1.41 6.08 -2.39 -0.01 1.40 16 33 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.10 1.95 4.92 -2.39 -0.01 1.94 16 35 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.08 2.64 6.91 -2.38 -0.02 2.63 16 37 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 38 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 39 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 40 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 41 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.07 2.41 7.00 -2.39 -0.02 2.39 16 44 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.06 1.00 5.12 -2.38 -0.01 0.99 16 46 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.05 0.86 8.05 -2.39 -0.02 0.84 16 48 H 0.07 0.98 7.99 -2.39 -0.02 0.97 16 49 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.08 0.90 7.85 -2.39 -0.02 0.88 16 51 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 52 H 0.04 1.07 5.09 -2.39 -0.01 1.06 16 53 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 54 H 0.07 1.16 6.15 -2.39 -0.01 1.14 16 Total: -1.00 -69.72 390.48 2.38 -67.34 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.86 Total: 18.73 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: 5.00 Total: -18.80 kcal Atomic # 7 Polarization: -85.26 SS G_CDS: -5.46 Total: -90.72 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.05 Total: -21.57 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Total: -69.72 2.38 -67.34 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573969112.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.569 kcal (2) G-P(sol) polarization free energy of solvation -69.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds