Wall clock time and date at job start Tue Mar 31 2020 15:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46860 * 2 1 4 4 C 1.50694 * 109.47362 * 240.00328 * 2 1 3 5 5 O 1.21284 * 119.99392 * 269.74553 * 4 2 1 6 6 N 1.34772 * 120.00534 * 89.74129 * 4 2 1 7 7 C 1.46922 * 120.62882 * 354.42903 * 6 4 2 8 8 C 1.52766 * 109.00665 * 233.58254 * 7 6 4 9 9 C 1.53044 * 109.37797 * 305.58625 * 8 7 6 10 10 C 1.53005 * 109.45568 * 181.26379 * 9 8 7 11 11 C 1.50695 * 109.47523 * 64.92885 * 10 9 8 12 12 H 1.08002 * 119.99772 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00065 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00092 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00259 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.46965 * 89.99824 * 15 13 11 17 17 H 1.48499 * 109.47480 * 210.00255 * 15 13 11 18 18 H 1.48509 * 109.46975 * 330.00403 * 15 13 11 19 19 C 1.53039 * 109.54024 * 61.24156 * 9 8 7 20 20 C 1.46926 * 120.63110 * 174.70057 * 6 4 2 21 21 N 1.46899 * 109.47118 * 119.99778 * 2 1 3 22 22 C 1.47901 * 110.99986 * 51.68495 * 21 2 1 23 23 H 1.09002 * 109.91561 * 26.49058 * 22 21 2 24 24 C 1.53008 * 110.07945 * 265.29051 * 22 21 2 25 25 C 1.53991 * 107.05850 * 145.84492 * 22 21 2 26 26 C 1.54598 * 105.14057 * 358.77469 * 25 22 21 27 27 C 1.49010 * 110.97201 * 169.12937 * 21 2 1 28 28 H 1.09002 * 110.67803 * 318.61459 * 27 21 2 29 29 C 1.53002 * 110.86526 * 81.89252 * 27 21 2 30 30 H 1.08994 * 109.47556 * 297.81210 * 1 2 3 31 31 H 1.09003 * 109.46729 * 57.81241 * 1 2 3 32 32 H 1.08999 * 109.46924 * 177.80543 * 1 2 3 33 33 H 1.08996 * 109.58649 * 353.40938 * 7 6 4 34 34 H 1.08995 * 109.58953 * 113.84195 * 7 6 4 35 35 H 1.08996 * 109.56518 * 185.55559 * 8 7 6 36 36 H 1.08999 * 109.36465 * 65.49249 * 8 7 6 37 37 H 1.09000 * 109.46098 * 301.21810 * 9 8 7 38 38 H 1.09002 * 109.46859 * 184.93512 * 10 9 8 39 39 H 1.09005 * 109.47057 * 304.92415 * 10 9 8 40 40 H 0.97002 * 119.99967 * 180.02562 * 14 13 11 41 41 H 1.09000 * 109.49596 * 178.68114 * 19 9 8 42 42 H 1.09000 * 109.52573 * 58.60236 * 19 9 8 43 43 H 1.09000 * 109.58969 * 246.15946 * 20 6 4 44 44 H 1.08993 * 109.58819 * 6.58552 * 20 6 4 45 45 H 1.08994 * 109.46997 * 300.85492 * 24 22 21 46 46 H 1.08996 * 109.47356 * 60.85862 * 24 22 21 47 47 H 1.09000 * 109.46513 * 180.85832 * 24 22 21 48 48 H 1.08996 * 110.30690 * 239.85777 * 25 22 21 49 49 H 1.09003 * 110.30909 * 117.68762 * 25 22 21 50 50 H 1.08997 * 110.72141 * 96.39887 * 26 25 22 51 51 H 1.08994 * 110.72319 * 219.50633 * 26 25 22 52 52 H 1.08995 * 109.46777 * 178.19672 * 29 27 21 53 53 H 1.08995 * 109.47240 * 298.19587 * 29 27 21 54 54 H 1.08997 * 109.47014 * 58.19465 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 8 2.2389 -1.9050 -1.1990 6 7 2.2521 -0.0181 -2.3657 7 6 1.8925 1.4035 -2.4572 8 6 0.9996 1.6133 -3.6789 9 6 1.7015 1.0608 -4.9216 10 6 0.8224 1.2983 -6.1512 11 6 0.6867 2.7795 -6.3933 12 1 1.1786 3.4814 -5.7361 13 6 -0.0646 3.2386 -7.4543 14 7 -0.1826 4.5313 -7.6659 15 14 -0.9148 2.0247 -8.5914 16 1 -2.2763 1.7331 -8.0752 17 1 -1.0162 2.6091 -9.9528 18 1 -0.1277 0.7667 -8.6501 19 6 1.9417 -0.4407 -4.7489 20 6 2.8503 -0.6722 -3.5375 21 7 2.0197 -0.6924 1.1994 22 6 1.3893 -2.0232 1.3377 23 1 1.0916 -2.3966 0.3579 24 6 0.1673 -1.9329 2.2541 25 6 2.4424 -2.9597 1.9583 26 6 3.7071 -2.0874 2.1304 27 6 3.4857 -0.9434 1.1093 28 1 3.7599 -1.2659 0.1048 29 6 4.2776 0.3019 1.5132 30 1 -0.3634 0.4794 0.9089 31 1 -0.3633 0.5475 -0.8698 32 1 -0.3633 -1.0269 -0.0394 33 1 1.3547 1.7029 -1.5576 34 1 2.7966 2.0032 -2.5616 35 1 0.8079 2.6779 -3.8124 36 1 0.0556 1.0888 -3.5309 37 1 2.6568 1.5685 -5.0550 38 1 1.2805 0.8283 -7.0215 39 1 -0.1638 0.8659 -5.9818 40 1 -0.7115 4.8543 -8.4122 41 1 2.4205 -0.8378 -5.6440 42 1 0.9891 -0.9463 -4.5911 43 1 3.8342 -0.2453 -3.7318 44 1 2.9444 -1.7419 -3.3505 45 1 0.4738 -1.5649 3.2332 46 1 -0.5621 -1.2487 1.8208 47 1 -0.2802 -2.9211 2.3612 48 1 2.6473 -3.7950 1.2887 49 1 2.1002 -3.3250 2.9266 50 1 3.7682 -1.6926 3.1446 51 1 4.6041 -2.6557 1.8846 52 1 5.3446 0.0837 1.4699 53 1 4.0456 1.1179 0.8288 54 1 4.0067 0.5912 2.5285 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573969114.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:56 Heat of formation + Delta-G solvation = -59.389778 kcal Electronic energy + Delta-G solvation = -29647.865429 eV Core-core repulsion = 26004.154601 eV Total energy + Delta-G solvation = -3643.710828 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.09592 -40.01497 -38.35436 -35.75705 -34.89074 -34.01702 -33.52818 -32.06664 -30.39686 -29.66771 -29.21545 -26.63423 -24.98338 -24.60071 -24.09043 -22.94078 -21.71212 -21.25571 -20.89874 -19.58194 -18.85099 -18.32692 -17.54406 -16.72175 -16.40205 -16.20239 -15.92861 -15.50680 -15.27605 -15.24254 -14.94042 -14.77827 -14.42839 -14.21464 -14.14214 -14.03887 -13.82678 -13.58332 -13.30373 -13.15946 -13.06303 -12.94715 -12.85493 -12.72348 -12.52072 -12.37724 -12.21859 -12.18258 -11.99013 -11.79009 -11.74935 -11.60312 -11.56108 -11.41556 -11.31134 -11.14940 -11.02016 -10.91779 -10.72768 -9.62837 -9.26615 -8.25918 -6.27203 1.34390 1.36786 1.47191 1.50511 1.99983 2.36809 2.85749 3.09810 3.44489 3.64452 3.73564 3.85661 3.96499 4.05459 4.10993 4.12321 4.16807 4.19024 4.27650 4.36731 4.45207 4.50855 4.54549 4.61180 4.65700 4.72195 4.75633 4.76948 4.81769 4.83813 4.86044 4.88841 4.92878 4.98904 5.05888 5.07744 5.11913 5.14760 5.17862 5.21045 5.24601 5.33471 5.34301 5.38490 5.40426 5.52511 5.58856 5.70551 5.73215 5.94065 6.01880 6.33592 6.40586 6.80219 7.09044 7.36779 8.90150 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.023935 B = 0.002885 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.548806 B = 9701.740629 C = 9782.303874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.056 3.944 3 H 0.118 0.882 4 C 0.490 3.510 5 O -0.573 6.573 6 N -0.604 5.604 7 C 0.110 3.890 8 C -0.114 4.114 9 C -0.069 4.069 10 C -0.007 4.007 11 C -0.514 4.514 12 H 0.044 0.956 13 C 0.006 3.994 14 N -0.950 5.950 15 Si 0.939 3.061 16 H -0.271 1.271 17 H -0.287 1.287 18 H -0.251 1.251 19 C -0.121 4.121 20 C 0.115 3.885 21 N -0.477 5.477 22 C 0.051 3.949 23 H 0.056 0.944 24 C -0.138 4.138 25 C -0.121 4.121 26 C -0.111 4.111 27 C 0.045 3.955 28 H 0.043 0.957 29 C -0.130 4.130 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.013 0.987 39 H 0.010 0.990 40 H 0.264 0.736 41 H 0.077 0.923 42 H 0.052 0.948 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.059 0.941 48 H 0.051 0.949 49 H 0.082 0.918 50 H 0.084 0.916 51 H 0.069 0.931 52 H 0.065 0.935 53 H 0.050 0.950 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.686 -12.376 21.521 25.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.057 4.057 3 H 0.135 0.865 4 C 0.279 3.721 5 O -0.454 6.454 6 N -0.336 5.336 7 C -0.012 4.012 8 C -0.153 4.153 9 C -0.087 4.087 10 C -0.044 4.044 11 C -0.552 4.552 12 H 0.063 0.937 13 C -0.191 4.191 14 N -0.592 5.592 15 Si 0.764 3.236 16 H -0.196 1.196 17 H -0.213 1.213 18 H -0.175 1.175 19 C -0.159 4.159 20 C -0.007 4.007 21 N -0.201 5.201 22 C -0.057 4.057 23 H 0.074 0.926 24 C -0.196 4.196 25 C -0.159 4.159 26 C -0.149 4.149 27 C -0.063 4.063 28 H 0.061 0.939 29 C -0.188 4.188 30 H 0.113 0.887 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.123 0.877 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.032 0.968 39 H 0.028 0.972 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.071 0.929 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.078 0.922 48 H 0.070 0.930 49 H 0.101 0.899 50 H 0.102 0.898 51 H 0.088 0.912 52 H 0.084 0.916 53 H 0.069 0.931 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.592 -12.539 21.877 25.829 hybrid contribution -0.345 -0.504 -2.109 2.195 sum 5.247 -13.043 19.769 24.258 Atomic orbital electron populations 1.21995 0.91094 1.02872 1.04081 1.22147 0.98217 0.99664 0.85667 0.86484 1.22253 0.76685 0.87532 0.85646 1.90619 1.54235 1.16021 1.84537 1.48425 1.60760 1.11798 1.12660 1.21859 0.99766 0.80037 0.99544 1.21704 0.98093 1.01738 0.93723 1.20911 0.98580 0.94374 0.94851 1.19576 0.95349 0.94661 0.94836 1.21442 1.29747 0.92278 1.11745 0.93743 1.25891 0.97294 0.96538 0.99359 1.70050 1.42621 1.14863 1.31634 0.85817 0.79505 0.80147 0.78114 1.19611 1.21343 1.17497 1.21917 0.99674 0.96449 0.97881 1.21549 0.96201 0.98518 0.84455 1.65335 1.04303 1.18912 1.31564 1.22514 0.95609 0.88472 0.99151 0.92645 1.21983 0.96293 1.01767 0.99534 1.22366 0.95169 0.97472 1.00906 1.22451 0.97520 0.95481 0.99410 1.23069 0.88059 0.96718 0.98450 0.93950 1.21644 0.99102 0.95817 1.02213 0.88691 0.91360 0.92428 0.87697 0.90322 0.91267 0.92760 0.92234 0.96825 0.97164 0.92747 0.90445 0.92869 0.90556 0.90262 0.91844 0.91808 0.92192 0.93045 0.89914 0.89784 0.91233 0.91580 0.93091 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 7.51 71.98 0.54 -2.16 16 2 C 0.06 1.17 2.04 44.17 0.09 1.26 16 3 H 0.12 2.16 6.15 -2.39 -0.01 2.14 16 4 C 0.49 12.98 5.41 87.66 0.47 13.45 16 5 O -0.57 -18.37 11.94 -3.04 -0.04 -18.40 16 6 N -0.60 -15.69 2.98 -819.78 -2.44 -18.14 16 7 C 0.11 2.66 6.12 86.22 0.53 3.18 16 8 C -0.11 -3.66 5.17 30.53 0.16 -3.50 16 9 C -0.07 -2.43 2.10 -10.76 -0.02 -2.46 16 10 C -0.01 -0.31 3.52 29.85 0.10 -0.20 16 11 C -0.51 -28.06 8.94 25.60 0.23 -27.84 16 12 H 0.04 2.62 7.30 -2.91 -0.02 2.60 16 13 C 0.01 0.33 5.47 84.65 0.46 0.79 16 14 N -0.95 -58.32 13.96 21.45 0.30 -58.02 16 15 Si 0.94 43.93 27.47 68.60 1.88 45.81 16 16 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 17 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 18 H -0.25 -11.03 6.54 99.48 0.65 -10.37 16 19 C -0.12 -3.63 5.36 30.67 0.16 -3.47 16 20 C 0.12 3.11 6.44 86.36 0.56 3.66 16 21 N -0.48 -9.86 4.76 -811.75 -3.86 -13.72 16 22 C 0.05 1.08 1.83 45.06 0.08 1.16 16 23 H 0.06 1.51 4.88 -2.39 -0.01 1.50 16 24 C -0.14 -2.34 8.86 71.98 0.64 -1.70 16 25 C -0.12 -2.34 6.57 31.47 0.21 -2.14 16 26 C -0.11 -1.99 6.49 31.80 0.21 -1.78 16 27 C 0.04 0.93 2.55 45.17 0.12 1.05 16 28 H 0.04 1.13 5.46 -2.39 -0.01 1.12 16 29 C -0.13 -2.18 9.51 71.98 0.68 -1.49 16 30 H 0.09 1.48 7.44 -2.39 -0.02 1.46 16 31 H 0.07 1.29 7.55 -2.39 -0.02 1.28 16 32 H 0.06 1.21 5.78 -2.39 -0.01 1.19 16 33 H 0.10 2.04 5.02 -2.39 -0.01 2.02 16 34 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.07 2.53 6.91 -2.39 -0.02 2.51 16 36 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.06 2.17 8.14 -2.39 -0.02 2.16 16 38 H 0.01 0.61 7.20 -2.39 -0.02 0.59 16 39 H 0.01 0.45 7.57 -2.38 -0.02 0.43 16 40 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 41 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.05 1.67 8.14 -2.39 -0.02 1.66 16 43 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.08 2.25 7.00 -2.39 -0.02 2.24 16 45 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.06 1.05 5.14 -2.39 -0.01 1.03 16 47 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.08 1.31 7.69 -2.39 -0.02 1.29 16 50 H 0.08 1.30 8.04 -2.39 -0.02 1.28 16 51 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 52 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 53 H 0.05 0.87 7.77 -2.39 -0.02 0.85 16 54 H 0.07 1.08 8.13 -2.39 -0.02 1.06 16 Total: -1.00 -65.51 388.63 1.86 -63.65 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.80 Total: 21.00 kcal Atomic # 6 Polarization: -27.40 SS G_CDS: 5.22 Total: -22.18 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -6.00 Total: -89.88 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.04 Total: -18.40 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.88 Total: 45.81 kcal Total: -65.51 1.86 -63.65 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573969114.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.260 kcal (2) G-P(sol) polarization free energy of solvation -65.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds