Wall clock time and date at job start Tue Mar 31 2020 15:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47204 * 2 1 4 4 C 1.50703 * 109.47400 * 239.99995 * 2 1 3 5 5 O 1.21276 * 120.00140 * 250.54007 * 4 2 1 6 6 N 1.34776 * 119.99558 * 70.53375 * 4 2 1 7 7 C 1.46919 * 120.63613 * 5.64886 * 6 4 2 8 8 C 1.53624 * 108.54305 * 126.36564 * 7 6 4 9 9 C 1.53034 * 109.24267 * 54.86152 * 8 7 6 10 10 C 1.53007 * 109.46426 * 178.49166 * 9 8 7 11 11 C 1.50701 * 109.46669 * 295.06568 * 10 9 8 12 12 H 1.08002 * 120.00168 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99967 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00167 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 119.99596 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.46718 * 90.00289 * 15 13 11 17 17 H 1.48503 * 109.46991 * 209.99928 * 15 13 11 18 18 H 1.48498 * 109.47256 * 329.99991 * 15 13 11 19 19 C 1.53046 * 109.53750 * 298.50977 * 9 8 7 20 20 C 1.46926 * 120.62795 * 185.92962 * 6 4 2 21 21 N 1.46895 * 109.47114 * 120.00053 * 2 1 3 22 22 C 1.47847 * 111.00103 * 63.64810 * 21 2 1 23 23 H 1.09002 * 110.37208 * 27.53922 * 22 21 2 24 24 C 1.52995 * 110.37264 * 265.19236 * 22 21 2 25 25 C 1.54909 * 104.79483 * 146.36144 * 22 21 2 26 26 C 1.55140 * 101.65775 * 322.93300 * 25 22 21 27 27 C 1.47447 * 111.00273 * 184.49055 * 21 2 1 28 28 H 1.08999 * 109.88910 * 117.33534 * 27 21 2 29 29 C 1.53003 * 109.88518 * 356.31279 * 27 21 2 30 30 H 1.09003 * 109.46998 * 59.09040 * 1 2 3 31 31 H 1.08997 * 109.47362 * 179.09114 * 1 2 3 32 32 H 1.08996 * 109.47408 * 299.09033 * 1 2 3 33 33 H 1.08997 * 109.59247 * 246.20067 * 7 6 4 34 34 H 1.09009 * 109.58740 * 6.63017 * 7 6 4 35 35 H 1.08998 * 109.63655 * 294.86565 * 8 7 6 36 36 H 1.09003 * 109.46176 * 174.74571 * 8 7 6 37 37 H 1.09002 * 109.46407 * 58.53102 * 9 8 7 38 38 H 1.08998 * 109.46791 * 55.06256 * 10 9 8 39 39 H 1.08993 * 109.47196 * 175.06791 * 10 9 8 40 40 H 0.97004 * 119.99953 * 179.97438 * 14 13 11 41 41 H 1.08995 * 109.49771 * 301.41699 * 19 9 8 42 42 H 1.08997 * 109.49792 * 181.31027 * 19 9 8 43 43 H 1.09007 * 109.59056 * 353.37677 * 20 6 4 44 44 H 1.08996 * 109.58802 * 113.79841 * 20 6 4 45 45 H 1.08998 * 109.46894 * 65.18173 * 24 22 21 46 46 H 1.09010 * 109.46921 * 185.17303 * 24 22 21 47 47 H 1.08992 * 109.47341 * 305.17672 * 24 22 21 48 48 H 1.09001 * 110.99283 * 204.83519 * 25 22 21 49 49 H 1.09005 * 110.98795 * 81.02826 * 25 22 21 50 50 H 1.08995 * 110.70406 * 277.27459 * 26 25 22 51 51 H 1.08995 * 110.70323 * 154.03408 * 26 25 22 52 52 H 1.08995 * 109.47128 * 48.74220 * 29 27 21 53 53 H 1.09005 * 109.46700 * 168.74045 * 29 27 21 54 54 H 1.09000 * 109.47060 * 288.73787 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.5644 -1.7955 -1.1294 6 7 1.8902 -0.1398 -2.4432 7 6 1.3611 1.2248 -2.5711 8 6 2.3525 2.0577 -3.3979 9 6 2.6097 1.3561 -4.7334 10 6 3.5676 2.2003 -5.5766 11 6 2.9057 3.5067 -5.9319 12 1 1.9021 3.7139 -5.5908 13 6 3.5812 4.4374 -6.6924 14 7 3.0038 5.5777 -7.0020 15 14 5.3167 4.0785 -7.2829 16 1 5.2602 3.4055 -8.6055 17 1 6.0705 5.3520 -7.4074 18 1 5.9991 3.1930 -6.3055 19 6 3.2320 -0.0186 -4.4778 20 6 2.2558 -0.8729 -3.6629 21 7 2.0196 -0.6925 1.1994 22 6 1.6186 -2.1155 1.1905 23 1 1.4969 -2.4690 0.1666 24 6 0.3221 -2.3085 1.9796 25 6 2.7873 -2.8602 1.8828 26 6 4.0157 -2.0684 1.3622 27 6 3.4896 -0.6196 1.2886 28 1 3.7799 -0.0736 2.1862 29 6 4.0521 0.0798 0.0495 30 1 -0.3633 0.5279 -0.8817 31 1 -0.3634 -1.0275 -0.0163 32 1 -0.3634 0.4996 0.8980 33 1 0.3947 1.1964 -3.0745 34 1 1.2470 1.6668 -1.5812 35 1 3.2910 2.1575 -2.8526 36 1 1.9316 3.0463 -3.5815 37 1 1.6672 1.2345 -5.2673 38 1 4.4762 2.3963 -5.0074 39 1 3.8198 1.6608 -6.4894 40 1 3.4793 6.2326 -7.5368 41 1 4.1622 0.1007 -3.9223 42 1 3.4364 -0.5081 -5.4300 43 1 2.7322 -1.8157 -3.3937 44 1 1.3610 -1.0690 -4.2534 45 1 -0.4914 -1.7873 1.4748 46 1 0.0893 -3.3716 2.0415 47 1 0.4447 -1.9042 2.9843 48 1 2.8302 -3.9016 1.5638 49 1 2.7077 -2.7887 2.9675 50 1 4.3114 -2.4216 0.3744 51 1 4.8467 -2.1415 2.0637 52 1 3.5017 1.0038 -0.1275 53 1 5.1058 0.3093 0.2088 54 1 3.9497 -0.5755 -0.8155 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573969116.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:00 Heat of formation + Delta-G solvation = -32.391729 kcal Electronic energy + Delta-G solvation = -30181.425484 eV Core-core repulsion = 26538.885380 eV Total energy + Delta-G solvation = -3642.540104 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.52697 -39.97923 -38.19844 -35.79552 -34.80484 -33.87898 -33.77381 -31.99651 -30.37729 -29.65104 -28.97793 -26.67507 -25.37038 -24.27956 -24.05989 -22.83894 -21.82884 -21.41867 -20.70467 -19.52913 -18.85353 -18.17631 -17.50488 -16.89848 -16.76629 -16.37773 -15.80947 -15.49533 -15.30574 -15.02464 -15.01967 -14.68036 -14.34447 -14.24532 -14.20041 -13.87654 -13.77397 -13.57751 -13.34199 -13.20429 -13.04383 -12.90560 -12.77933 -12.62524 -12.44680 -12.41839 -12.16772 -12.04817 -12.00055 -11.79945 -11.75867 -11.60474 -11.39613 -11.30262 -11.21912 -11.13194 -10.93944 -10.82850 -10.71620 -9.57566 -9.08849 -8.26094 -6.27229 1.33901 1.36365 1.46683 1.57293 2.03395 2.36507 2.89523 3.09700 3.49179 3.68938 3.78171 3.88496 3.98642 4.00197 4.08817 4.13333 4.17690 4.19731 4.32900 4.39539 4.43170 4.52201 4.54284 4.63469 4.65051 4.73363 4.76773 4.79384 4.81650 4.86160 4.89190 4.93213 4.94590 5.03384 5.04101 5.08836 5.15372 5.16250 5.19112 5.20574 5.23772 5.35609 5.37869 5.40182 5.48484 5.56921 5.63220 5.72211 5.74137 6.02628 6.10470 6.33701 6.45913 6.80276 7.16482 7.36742 8.89996 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.023436 B = 0.003139 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.478916 B = 8916.834427 C = 9192.385169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.054 3.946 3 H 0.114 0.886 4 C 0.501 3.499 5 O -0.565 6.565 6 N -0.604 5.604 7 C 0.111 3.889 8 C -0.115 4.115 9 C -0.068 4.068 10 C -0.007 4.007 11 C -0.514 4.514 12 H 0.044 0.956 13 C 0.006 3.994 14 N -0.950 5.950 15 Si 0.939 3.061 16 H -0.270 1.270 17 H -0.287 1.287 18 H -0.253 1.253 19 C -0.121 4.121 20 C 0.117 3.883 21 N -0.494 5.494 22 C 0.048 3.952 23 H 0.074 0.926 24 C -0.138 4.138 25 C -0.114 4.114 26 C -0.127 4.127 27 C 0.074 3.926 28 H 0.089 0.911 29 C -0.197 4.197 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.051 0.949 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.010 0.990 39 H 0.012 0.988 40 H 0.264 0.736 41 H 0.051 0.949 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.062 0.938 46 H 0.060 0.940 47 H 0.059 0.941 48 H 0.067 0.933 49 H 0.077 0.923 50 H 0.055 0.945 51 H 0.075 0.925 52 H 0.061 0.939 53 H 0.058 0.942 54 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.716 -15.951 18.358 24.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.059 4.059 3 H 0.131 0.869 4 C 0.290 3.710 5 O -0.447 6.447 6 N -0.336 5.336 7 C -0.012 4.012 8 C -0.153 4.153 9 C -0.087 4.087 10 C -0.045 4.045 11 C -0.552 4.552 12 H 0.063 0.937 13 C -0.191 4.191 14 N -0.592 5.592 15 Si 0.764 3.236 16 H -0.195 1.195 17 H -0.213 1.213 18 H -0.177 1.177 19 C -0.159 4.159 20 C -0.006 4.006 21 N -0.218 5.218 22 C -0.059 4.059 23 H 0.092 0.908 24 C -0.196 4.196 25 C -0.152 4.152 26 C -0.165 4.165 27 C -0.034 4.034 28 H 0.106 0.894 29 C -0.255 4.255 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.121 0.879 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.028 0.972 39 H 0.030 0.970 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.081 0.919 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.086 0.914 49 H 0.096 0.904 50 H 0.074 0.926 51 H 0.093 0.907 52 H 0.080 0.920 53 H 0.077 0.923 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.643 -16.099 18.767 24.993 hybrid contribution 1.372 0.247 -1.672 2.177 sum -2.270 -15.851 17.095 23.423 Atomic orbital electron populations 1.22003 0.90765 1.03236 1.04111 1.22178 0.98335 0.99392 0.85982 0.86868 1.21976 0.77127 0.86231 0.85620 1.90592 1.44897 1.23337 1.85847 1.48389 1.63221 1.16001 1.06009 1.22056 0.96934 0.80368 1.01794 1.21854 0.99096 0.99002 0.95345 1.20904 0.98523 0.93590 0.95641 1.19580 0.95550 0.94165 0.95173 1.21450 1.01493 1.00862 1.31370 0.93727 1.25890 1.02046 0.94836 0.96325 1.70050 1.39729 1.09035 1.40356 0.85818 0.80517 0.77744 0.79497 1.19515 1.21350 1.17675 1.21913 0.98213 0.95697 1.00081 1.21549 0.98730 0.95196 0.85135 1.64140 1.10280 1.14059 1.33278 1.22958 0.95652 0.86946 1.00364 0.90808 1.21930 0.96033 1.01260 1.00353 1.22593 0.93859 0.98621 1.00119 1.22734 0.98269 0.94618 1.00915 1.22304 0.86967 0.96366 0.97722 0.89351 1.22974 1.01668 1.01054 0.99762 0.90660 0.91917 0.89402 0.89959 0.87935 0.93037 0.91543 0.92159 0.97172 0.96976 0.92758 0.93057 0.90501 0.90016 0.90492 0.91867 0.92152 0.92195 0.91437 0.90436 0.92643 0.90663 0.92000 0.92272 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 7.94 71.98 0.57 -1.77 16 2 C 0.05 1.09 1.49 44.17 0.07 1.15 16 3 H 0.11 2.23 4.92 -2.39 -0.01 2.21 16 4 C 0.50 12.31 3.80 87.66 0.33 12.64 16 5 O -0.56 -16.45 9.26 -3.02 -0.03 -16.47 16 6 N -0.60 -14.75 2.97 -818.07 -2.43 -17.17 16 7 C 0.11 2.58 5.18 86.51 0.45 3.03 16 8 C -0.11 -3.64 5.21 30.82 0.16 -3.48 16 9 C -0.07 -2.38 2.10 -10.76 -0.02 -2.41 16 10 C -0.01 -0.33 3.52 29.85 0.10 -0.22 16 11 C -0.51 -28.03 8.94 25.60 0.23 -27.80 16 12 H 0.04 2.63 7.30 -2.91 -0.02 2.61 16 13 C 0.01 0.32 5.47 84.65 0.46 0.78 16 14 N -0.95 -58.34 13.96 21.45 0.30 -58.04 16 15 Si 0.94 44.01 27.47 68.60 1.88 45.89 16 16 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 17 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 18 H -0.25 -11.18 6.54 99.48 0.65 -10.53 16 19 C -0.12 -3.54 5.36 30.67 0.16 -3.37 16 20 C 0.12 2.97 6.44 86.36 0.56 3.53 16 21 N -0.49 -10.36 4.85 -815.29 -3.96 -14.32 16 22 C 0.05 1.00 1.85 45.38 0.08 1.09 16 23 H 0.07 1.92 4.94 -2.55 -0.01 1.91 16 24 C -0.14 -2.29 9.19 71.98 0.66 -1.63 16 25 C -0.11 -2.23 6.49 31.98 0.21 -2.02 16 26 C -0.13 -2.73 5.95 31.77 0.19 -2.54 16 27 C 0.07 1.61 3.71 45.26 0.17 1.78 16 28 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 29 C -0.20 -4.73 7.61 71.98 0.55 -4.18 16 30 H 0.07 1.11 6.48 -2.39 -0.02 1.09 16 31 H 0.06 1.08 5.55 -2.39 -0.01 1.06 16 32 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.10 1.94 5.15 -2.38 -0.01 1.93 16 35 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 36 H 0.07 2.43 6.91 -2.39 -0.02 2.42 16 37 H 0.06 2.16 8.14 -2.39 -0.02 2.15 16 38 H 0.01 0.46 7.20 -2.39 -0.02 0.44 16 39 H 0.01 0.53 7.57 -2.39 -0.02 0.51 16 40 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 41 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.08 2.18 7.00 -2.38 -0.02 2.16 16 44 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.06 0.99 5.34 -2.39 -0.01 0.98 16 46 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 47 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 49 H 0.08 1.33 8.06 -2.38 -0.02 1.31 16 50 H 0.05 1.45 6.73 -2.39 -0.02 1.44 16 51 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 52 H 0.06 1.44 5.68 -2.39 -0.01 1.42 16 53 H 0.06 1.35 8.14 -2.38 -0.02 1.34 16 54 H 0.07 1.97 4.18 -2.39 -0.01 1.96 16 Total: -1.00 -64.03 376.65 1.52 -62.51 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.81 Total: 23.02 kcal Atomic # 6 Polarization: -30.35 SS G_CDS: 4.93 Total: -25.42 kcal Atomic # 7 Polarization: -83.45 SS G_CDS: -6.08 Total: -89.53 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.03 Total: -16.47 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.88 Total: 45.89 kcal Total: -64.03 1.52 -62.51 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573969116.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.121 kcal (2) G-P(sol) polarization free energy of solvation -64.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds