Wall clock time and date at job start Tue Mar 31 2020 15:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47641 * 2 1 4 4 C 1.50701 * 109.47122 * 119.99843 * 2 1 3 5 5 O 1.21283 * 119.99976 * 98.55507 * 4 2 1 6 6 N 1.34779 * 120.00213 * 278.55931 * 4 2 1 7 7 C 1.46927 * 120.62646 * 354.83858 * 6 4 2 8 8 C 1.52764 * 109.00456 * 233.58096 * 7 6 4 9 9 C 1.53035 * 109.38456 * 305.59195 * 8 7 6 10 10 C 1.53005 * 109.46091 * 181.26219 * 9 8 7 11 11 C 1.50699 * 109.46935 * 64.92742 * 10 9 8 12 12 H 1.07995 * 120.00173 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99625 * 180.02562 * 11 10 9 14 14 N 1.31506 * 120.00232 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99726 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47487 * 59.99508 * 15 13 11 17 17 H 1.48499 * 109.47319 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46929 * 299.99558 * 15 13 11 19 19 C 1.53034 * 109.53974 * 61.23961 * 9 8 7 20 20 C 1.46924 * 120.63008 * 175.11368 * 6 4 2 21 21 N 1.46903 * 109.47044 * 239.99563 * 2 1 3 22 22 C 1.48536 * 110.99887 * 188.52857 * 21 2 1 23 23 H 1.09000 * 110.66480 * 41.29369 * 22 21 2 24 24 C 1.53000 * 110.66928 * 278.15587 * 22 21 2 25 25 C 1.54936 * 103.22525 * 159.72288 * 22 21 2 26 26 C 1.54597 * 102.92391 * 322.58639 * 25 22 21 27 27 C 1.47895 * 111.00093 * 305.92892 * 21 2 1 28 28 H 1.09007 * 109.91815 * 333.50568 * 27 21 2 29 29 C 1.53000 * 109.92120 * 94.60471 * 27 21 2 30 30 H 1.09001 * 109.47148 * 306.76993 * 1 2 3 31 31 H 1.08996 * 109.47414 * 186.76666 * 1 2 3 32 32 H 1.09005 * 109.47077 * 66.76516 * 1 2 3 33 33 H 1.08998 * 109.58911 * 353.41503 * 7 6 4 34 34 H 1.08995 * 109.58650 * 113.84471 * 7 6 4 35 35 H 1.09000 * 109.56376 * 185.55379 * 8 7 6 36 36 H 1.09002 * 109.35755 * 65.50091 * 8 7 6 37 37 H 1.09005 * 109.46055 * 301.21903 * 9 8 7 38 38 H 1.08990 * 109.47253 * 184.92942 * 10 9 8 39 39 H 1.09002 * 109.46668 * 304.93079 * 10 9 8 40 40 H 0.96995 * 120.00501 * 179.97438 * 14 13 11 41 41 H 1.09009 * 109.49816 * 178.68408 * 19 9 8 42 42 H 1.08992 * 109.52514 * 58.60327 * 19 9 8 43 43 H 1.08999 * 109.58772 * 246.15527 * 20 6 4 44 44 H 1.08999 * 109.58932 * 6.58603 * 20 6 4 45 45 H 1.09004 * 109.46806 * 65.30928 * 24 22 21 46 46 H 1.08995 * 109.46932 * 185.30850 * 24 22 21 47 47 H 1.08994 * 109.47169 * 305.31261 * 24 22 21 48 48 H 1.08997 * 110.72703 * 204.23026 * 25 22 21 49 49 H 1.08997 * 110.72730 * 80.94294 * 25 22 21 50 50 H 1.08999 * 110.30913 * 263.04655 * 26 25 22 51 51 H 1.08995 * 110.31148 * 140.86855 * 26 25 22 52 52 H 1.08995 * 109.46926 * 59.99725 * 29 27 21 53 53 H 1.08999 * 109.47159 * 179.97438 * 29 27 21 54 54 H 1.09003 * 109.46598 * 300.00072 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3817 -1.8697 1.1612 6 7 2.0932 -0.0574 2.4080 7 6 1.7812 1.3762 2.4859 8 6 2.9451 2.1028 3.1575 9 6 3.2399 1.4490 4.5093 10 6 4.3848 2.1950 5.1976 11 6 3.9465 3.6004 5.5197 12 1 2.9509 3.9285 5.2600 13 6 4.8167 4.4674 6.1461 14 7 6.0288 4.0677 6.4628 15 14 4.2732 6.2092 6.5461 16 1 3.0969 6.1652 7.4514 17 1 5.3843 6.9334 7.2140 18 1 3.9061 6.9137 5.2914 19 6 3.6400 -0.0125 4.2946 20 6 2.4786 -0.7644 3.6369 21 7 2.0196 -0.6926 -1.1994 22 6 3.4900 -0.8931 -1.1353 23 1 3.7942 -1.1907 -0.1319 24 6 4.2274 0.3747 -1.5711 25 6 3.7353 -2.0427 -2.1446 26 6 2.5048 -2.9549 -1.9355 27 6 1.4324 -2.0457 -1.3069 28 1 1.1668 -2.4151 -0.3163 29 6 0.1897 -2.0054 -2.1985 30 1 -0.3633 0.6152 0.8232 31 1 -0.3634 -1.0204 0.1211 32 1 -0.3633 0.4054 -0.9444 33 1 1.6349 1.7735 1.4815 34 1 0.8751 1.5215 3.0741 35 1 2.6829 3.1499 3.3092 36 1 3.8276 2.0368 2.5212 37 1 2.3492 1.4932 5.1361 38 1 4.6535 1.6781 6.1187 39 1 5.2486 2.2271 4.5335 40 1 6.6411 4.6777 6.9031 41 1 3.8725 -0.4711 5.2558 42 1 4.5162 -0.0590 3.6479 43 1 1.6305 -0.7972 4.3209 44 1 2.7924 -1.7791 3.3917 45 1 4.0290 1.1740 -0.8571 46 1 5.2987 0.1775 -1.6074 47 1 3.8796 0.6757 -2.5593 48 1 4.6556 -2.5758 -1.9059 49 1 3.7632 -1.6607 -3.1651 50 1 2.7511 -3.7731 -1.2588 51 1 2.1565 -3.3454 -2.8916 52 1 0.4668 -1.6539 -3.1923 53 1 -0.2366 -3.0058 -2.2730 54 1 -0.5462 -1.3277 -1.7655 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573969119.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:03 Heat of formation + Delta-G solvation = -60.794435 kcal Electronic energy + Delta-G solvation = -29707.468087 eV Core-core repulsion = 26063.696349 eV Total energy + Delta-G solvation = -3643.771738 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.10190 -40.00880 -38.32293 -35.77426 -34.89360 -33.90102 -33.52220 -32.06255 -30.06709 -29.51706 -29.19867 -26.64092 -25.04852 -24.64579 -24.14306 -23.08678 -21.71319 -21.27024 -20.89360 -19.64183 -18.44689 -18.30039 -17.38873 -16.73027 -16.53811 -16.39998 -15.87560 -15.50619 -15.23701 -15.12188 -14.85695 -14.66456 -14.43353 -14.20557 -14.08024 -13.88660 -13.79264 -13.40877 -13.36979 -13.09741 -13.00463 -12.91506 -12.75319 -12.71164 -12.51631 -12.48535 -12.29759 -12.19830 -12.15738 -11.81296 -11.74556 -11.60940 -11.53387 -11.33382 -11.25997 -11.20647 -10.93246 -10.86977 -10.51821 -9.60910 -9.25161 -8.16326 -6.26354 1.42206 1.44529 1.51932 1.53247 2.01232 2.43048 2.87401 3.17459 3.46589 3.64920 3.73860 3.85647 3.99932 4.07171 4.12765 4.15352 4.16622 4.20194 4.28494 4.38222 4.46218 4.54136 4.54568 4.63442 4.68826 4.74530 4.76322 4.79976 4.82751 4.85780 4.87545 4.88858 4.94581 4.99444 5.06504 5.08347 5.14809 5.18465 5.23812 5.28152 5.30773 5.34408 5.37321 5.38800 5.52693 5.54418 5.58414 5.79899 5.88317 5.94987 6.03882 6.27880 6.43061 6.90486 7.10545 7.42727 8.95602 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.020926 B = 0.002951 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.703791 B = 9487.601755 C = 9562.801925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.053 3.947 3 H 0.114 0.886 4 C 0.487 3.513 5 O -0.574 6.574 6 N -0.604 5.604 7 C 0.110 3.890 8 C -0.113 4.113 9 C -0.072 4.072 10 C 0.034 3.966 11 C -0.527 4.527 12 H 0.069 0.931 13 C -0.004 4.004 14 N -0.939 5.939 15 Si 0.961 3.039 16 H -0.266 1.266 17 H -0.290 1.290 18 H -0.263 1.263 19 C -0.120 4.120 20 C 0.119 3.881 21 N -0.477 5.477 22 C 0.044 3.956 23 H 0.041 0.959 24 C -0.132 4.132 25 C -0.111 4.111 26 C -0.120 4.120 27 C 0.053 3.947 28 H 0.055 0.945 29 C -0.137 4.137 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.041 0.959 37 H 0.065 0.935 38 H -0.016 1.016 39 H -0.018 1.018 40 H 0.261 0.739 41 H 0.068 0.932 42 H 0.040 0.960 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.045 0.955 46 H 0.060 0.940 47 H 0.073 0.927 48 H 0.065 0.935 49 H 0.084 0.916 50 H 0.050 0.950 51 H 0.083 0.917 52 H 0.061 0.939 53 H 0.060 0.940 54 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.080 -9.672 -18.205 24.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.059 4.059 3 H 0.132 0.868 4 C 0.276 3.724 5 O -0.455 6.455 6 N -0.336 5.336 7 C -0.012 4.012 8 C -0.152 4.152 9 C -0.090 4.090 10 C -0.004 4.004 11 C -0.565 4.565 12 H 0.088 0.912 13 C -0.201 4.201 14 N -0.580 5.580 15 Si 0.786 3.214 16 H -0.191 1.191 17 H -0.216 1.216 18 H -0.188 1.188 19 C -0.159 4.159 20 C -0.004 4.004 21 N -0.200 5.200 22 C -0.064 4.064 23 H 0.059 0.941 24 C -0.189 4.189 25 C -0.149 4.149 26 C -0.158 4.158 27 C -0.055 4.055 28 H 0.073 0.927 29 C -0.195 4.195 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.124 0.876 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.002 0.998 39 H 0.000 1.000 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.059 0.941 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.064 0.936 46 H 0.079 0.921 47 H 0.092 0.908 48 H 0.083 0.917 49 H 0.102 0.898 50 H 0.068 0.932 51 H 0.102 0.898 52 H 0.080 0.920 53 H 0.079 0.921 54 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.911 -9.893 -18.616 24.721 hybrid contribution 1.056 0.318 1.774 2.089 sum -11.855 -9.575 -16.843 22.713 Atomic orbital electron populations 1.21943 0.90079 1.02854 1.04574 1.22189 0.98906 0.99408 0.85427 0.86828 1.22328 0.77200 0.87212 0.85705 1.90620 1.50671 1.18916 1.85272 1.48430 1.66525 1.10907 1.07740 1.21942 0.98041 0.78286 1.02930 1.21710 0.97701 1.00248 0.95505 1.21023 0.98571 0.93033 0.96391 1.19004 0.93324 0.94528 0.93498 1.21639 0.99565 0.97763 1.37517 0.91245 1.25988 0.94960 1.03264 0.95896 1.70106 1.07482 1.37535 1.42843 0.85563 0.77750 0.79262 0.78874 1.19122 1.21626 1.18788 1.21884 0.97489 0.96339 1.00146 1.21515 0.97327 0.95944 0.85630 1.65216 1.04778 1.17953 1.32075 1.22964 0.88337 0.96521 0.98544 0.94062 1.21655 0.99446 0.95809 1.02019 1.22440 0.97788 0.95288 0.99384 1.22354 0.95140 0.97468 1.00830 1.22498 0.95671 0.88074 0.99214 0.92683 1.21979 0.96008 1.01849 0.99623 0.90284 0.92503 0.88762 0.87609 0.89321 0.90276 0.94000 0.91706 0.99812 0.99982 0.93066 0.91349 0.94090 0.90047 0.90590 0.93631 0.92092 0.90781 0.91671 0.89758 0.93159 0.89792 0.92007 0.92115 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 7.58 71.98 0.55 -1.63 16 2 C 0.05 1.12 2.03 44.17 0.09 1.21 16 3 H 0.11 2.24 5.86 -2.39 -0.01 2.22 16 4 C 0.49 13.26 5.62 87.66 0.49 13.76 16 5 O -0.57 -19.02 11.57 -3.04 -0.04 -19.05 16 6 N -0.60 -16.18 2.98 -819.73 -2.44 -18.62 16 7 C 0.11 2.59 5.91 86.22 0.51 3.10 16 8 C -0.11 -3.71 5.17 30.53 0.16 -3.55 16 9 C -0.07 -2.73 2.10 -10.77 -0.02 -2.75 16 10 C 0.03 1.72 4.45 29.85 0.13 1.85 16 11 C -0.53 -28.43 8.39 25.60 0.21 -28.22 16 12 H 0.07 3.48 7.06 -2.91 -0.02 3.46 16 13 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 14 N -0.94 -57.02 13.29 21.45 0.28 -56.74 16 15 Si 0.96 43.05 29.54 68.60 2.03 45.08 16 16 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 17 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 18 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 19 C -0.12 -4.12 5.36 30.67 0.16 -3.95 16 20 C 0.12 3.42 6.44 86.36 0.56 3.97 16 21 N -0.48 -10.36 4.72 -812.96 -3.84 -14.20 16 22 C 0.04 1.07 2.52 45.26 0.11 1.18 16 23 H 0.04 1.29 5.36 -2.39 -0.01 1.28 16 24 C -0.13 -2.80 9.47 71.98 0.68 -2.11 16 25 C -0.11 -2.30 6.50 31.80 0.21 -2.09 16 26 C -0.12 -2.47 6.57 31.48 0.21 -2.27 16 27 C 0.05 1.15 1.80 45.06 0.08 1.23 16 28 H 0.06 1.48 5.01 -2.38 -0.01 1.47 16 29 C -0.14 -2.20 8.91 71.98 0.64 -1.56 16 30 H 0.08 1.06 7.79 -2.39 -0.02 1.04 16 31 H 0.06 1.00 6.16 -2.39 -0.01 0.99 16 32 H 0.09 1.23 7.32 -2.38 -0.02 1.21 16 33 H 0.11 1.96 5.43 -2.39 -0.01 1.95 16 34 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.08 2.70 6.91 -2.39 -0.02 2.69 16 36 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 37 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 38 H -0.02 -0.94 8.14 -2.39 -0.02 -0.95 16 39 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 40 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 41 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 42 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 44 H 0.08 2.34 7.00 -2.39 -0.02 2.32 16 45 H 0.04 1.02 7.78 -2.38 -0.02 1.00 16 46 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 49 H 0.08 1.50 8.05 -2.39 -0.02 1.48 16 50 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.08 1.40 7.69 -2.39 -0.02 1.38 16 52 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 53 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 54 H 0.07 0.99 5.06 -2.39 -0.01 0.98 16 Total: -1.00 -66.62 392.48 2.09 -64.54 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 0.85 Total: 20.59 kcal Atomic # 6 Polarization: -26.82 SS G_CDS: 5.24 Total: -21.59 kcal Atomic # 7 Polarization: -83.57 SS G_CDS: -5.99 Total: -89.56 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.04 Total: -19.05 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -66.62 2.09 -64.54 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573969119.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.742 kcal (2) G-P(sol) polarization free energy of solvation -66.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds