Wall clock time and date at job start Tue Mar 31 2020 15:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47365 * 2 1 4 4 C 1.53003 * 109.46520 * 240.00422 * 2 1 3 5 5 C 1.52996 * 109.46812 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.47250 * 60.00140 * 5 4 2 7 7 C 1.52999 * 109.46747 * 299.99687 * 6 5 4 8 8 H 1.09001 * 109.47567 * 300.00162 * 7 6 5 9 9 N 1.46505 * 109.47281 * 179.97438 * 7 6 5 10 10 C 1.34777 * 119.99491 * 84.99735 * 9 7 6 11 11 O 1.21581 * 120.00462 * 355.02899 * 10 9 7 12 12 N 1.34775 * 119.99547 * 175.02366 * 10 9 7 13 13 C 1.46924 * 120.63316 * 4.94149 * 12 10 9 14 14 C 1.53628 * 108.53939 * 126.37123 * 13 12 10 15 15 C 1.53032 * 109.24627 * 54.85816 * 14 13 12 16 16 C 1.52999 * 109.46391 * 178.48793 * 15 14 13 17 17 C 1.50698 * 109.47186 * 295.06757 * 16 15 14 18 18 H 1.08000 * 120.00137 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99600 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00561 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99733 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46807 * 60.00264 * 21 19 17 23 23 H 1.48500 * 109.47531 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47237 * 300.00745 * 21 19 17 25 25 C 1.53039 * 109.53764 * 298.51174 * 15 14 13 26 26 C 1.46933 * 120.62910 * 185.22911 * 12 10 9 27 27 C 1.52996 * 109.46981 * 120.00460 * 2 1 3 28 28 H 1.08994 * 109.47545 * 299.99525 * 27 2 1 29 29 C 1.52994 * 109.47499 * 59.99987 * 27 2 1 30 30 H 1.09004 * 109.46690 * 299.99595 * 1 2 3 31 31 H 1.09001 * 109.47457 * 59.99136 * 1 2 3 32 32 H 1.08996 * 109.47365 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47421 * 60.00104 * 4 2 1 34 34 H 1.08996 * 109.46957 * 299.99827 * 4 2 1 35 35 H 1.08993 * 109.47561 * 300.00186 * 5 4 2 36 36 H 1.09000 * 109.47232 * 179.97438 * 5 4 2 37 37 H 1.08993 * 109.47261 * 179.97438 * 6 5 4 38 38 H 1.08996 * 109.47298 * 59.99576 * 6 5 4 39 39 H 0.96991 * 120.00195 * 265.00780 * 9 7 6 40 40 H 1.08993 * 109.59177 * 246.20082 * 13 12 10 41 41 H 1.09003 * 109.58439 * 6.63206 * 13 12 10 42 42 H 1.09003 * 109.63436 * 294.86369 * 14 13 12 43 43 H 1.08997 * 109.45729 * 174.74567 * 14 13 12 44 44 H 1.09004 * 109.46118 * 58.52704 * 15 14 13 45 45 H 1.09004 * 109.46932 * 55.07055 * 16 15 14 46 46 H 1.09007 * 109.47269 * 175.06709 * 16 15 14 47 47 H 0.97003 * 120.00300 * 179.97438 * 20 19 17 48 48 H 1.08999 * 109.50018 * 301.41009 * 25 15 14 49 49 H 1.09005 * 109.52625 * 181.32717 * 25 15 14 50 50 H 1.09003 * 109.58673 * 353.36774 * 26 12 10 51 51 H 1.08998 * 109.59177 * 113.79780 * 26 12 10 52 52 H 1.09001 * 109.47334 * 179.97438 * 29 27 2 53 53 H 1.09004 * 109.47183 * 59.99436 * 29 27 2 54 54 H 1.09001 * 109.47226 * 299.99649 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5699 -0.7207 -1.2498 6 6 4.0805 -1.4417 -0.0006 7 6 3.5706 -0.7205 1.2487 8 1 3.9336 0.3073 1.2486 9 7 4.0590 -1.4111 2.4449 10 6 5.2810 -1.1253 2.9362 11 8 6.0139 -0.3623 2.3373 12 7 5.6905 -1.6854 4.0917 13 6 4.8622 -2.6909 4.7711 14 6 5.7180 -3.9426 5.0183 15 6 6.9811 -3.5465 5.7861 16 6 7.8190 -4.7953 6.0679 17 6 7.0595 -5.7116 6.9924 18 1 6.0773 -5.4316 7.3434 19 6 7.6183 -6.9080 7.3892 20 7 8.8141 -7.2494 6.9613 21 14 6.6767 -8.0443 8.5345 22 1 5.3961 -8.4408 7.8956 23 1 7.4899 -9.2563 8.8082 24 1 6.3955 -7.3388 9.8106 25 6 7.8004 -2.5609 4.9498 26 6 6.9710 -1.2975 4.6990 27 6 2.0400 -0.7213 1.2492 28 1 1.6768 -0.2076 2.1392 29 6 1.5301 -2.1638 1.2491 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6766 -0.2073 -2.1393 34 1 1.6766 -1.7488 -1.2494 35 1 3.9329 0.3070 -1.2499 36 1 3.9332 -1.2348 -2.1396 37 1 5.1704 -1.4417 -0.0011 38 1 3.7175 -2.4694 -0.0003 39 1 3.5029 -2.0741 2.8831 40 1 4.5101 -2.2920 5.7224 41 1 4.0098 -2.9476 4.1421 42 1 5.9973 -4.3896 4.0642 43 1 5.1470 -4.6629 5.6041 44 1 6.7007 -3.0771 6.7291 45 1 8.0252 -5.3135 5.1314 46 1 8.7590 -4.5040 6.5366 47 1 9.2073 -8.0909 7.2408 48 1 8.0602 -3.0208 3.9964 49 1 8.7117 -2.2971 5.4868 50 1 7.5104 -0.6346 4.0225 51 1 6.7873 -0.7873 5.6446 52 1 1.8938 -2.6778 2.1389 53 1 1.8933 -2.6776 0.3590 54 1 0.4401 -2.1638 1.2492 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575271179.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:39 Heat of formation + Delta-G solvation = -82.334045 kcal Electronic energy + Delta-G solvation = -28739.898522 eV Core-core repulsion = 25095.192756 eV Total energy + Delta-G solvation = -3644.705766 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.73420 -40.33122 -38.66795 -35.72976 -35.53243 -33.98847 -33.46045 -32.15894 -31.14432 -29.69333 -28.14071 -26.66904 -26.22024 -24.21475 -23.82034 -22.90584 -22.27890 -21.21504 -20.62212 -19.55409 -18.86985 -18.38767 -17.38345 -16.64483 -16.49231 -16.40977 -15.97371 -15.70057 -15.24159 -15.18223 -15.13244 -14.72353 -14.54530 -14.40149 -14.23272 -13.97640 -13.74544 -13.44121 -13.37317 -13.18807 -12.94202 -12.80405 -12.73742 -12.50728 -12.48301 -12.33649 -12.27085 -12.17029 -12.07989 -11.76481 -11.56534 -11.44660 -11.30296 -11.15532 -11.09623 -10.99879 -10.92359 -10.83901 -10.50657 -10.11340 -9.42354 -8.14992 -6.24915 1.42451 1.44967 1.52392 1.67898 2.14027 2.43819 2.91080 3.18605 3.66427 3.74333 3.85684 3.94300 4.01048 4.08235 4.15353 4.20719 4.20938 4.35327 4.41199 4.41700 4.47764 4.51856 4.58735 4.67275 4.74158 4.76962 4.80959 4.85292 4.89026 4.95565 4.98815 5.03783 5.06315 5.09769 5.14593 5.15788 5.23658 5.30540 5.32498 5.33424 5.38525 5.40950 5.45354 5.51191 5.55817 5.59667 5.64780 5.70092 5.82356 5.90433 6.01652 6.29923 6.91929 6.97611 7.43903 7.57064 8.96857 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.018906 B = 0.002599 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.662674 B =10769.996843 C =11504.607974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 H 0.066 0.934 4 C -0.113 4.113 5 C -0.114 4.114 6 C -0.128 4.128 7 C 0.170 3.830 8 H 0.062 0.938 9 N -0.732 5.732 10 C 0.702 3.298 11 O -0.635 6.635 12 N -0.626 5.626 13 C 0.119 3.881 14 C -0.112 4.112 15 C -0.071 4.071 16 C 0.032 3.968 17 C -0.526 4.526 18 H 0.069 0.931 19 C -0.005 4.005 20 N -0.939 5.939 21 Si 0.961 3.039 22 H -0.264 1.264 23 H -0.290 1.290 24 H -0.266 1.266 25 C -0.122 4.122 26 C 0.137 3.863 27 C -0.084 4.084 28 H 0.078 0.922 29 C -0.155 4.155 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.034 0.966 38 H 0.071 0.929 39 H 0.405 0.595 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.041 0.959 43 H 0.077 0.923 44 H 0.065 0.935 45 H -0.018 1.018 46 H -0.015 1.015 47 H 0.260 0.740 48 H 0.041 0.959 49 H 0.071 0.929 50 H 0.078 0.922 51 H 0.082 0.918 52 H 0.052 0.948 53 H 0.063 0.937 54 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.857 14.268 -13.445 27.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.101 4.101 3 H 0.084 0.916 4 C -0.150 4.150 5 C -0.152 4.152 6 C -0.167 4.167 7 C 0.065 3.935 8 H 0.080 0.920 9 N -0.390 5.390 10 C 0.404 3.596 11 O -0.517 6.517 12 N -0.363 5.363 13 C -0.004 4.004 14 C -0.150 4.150 15 C -0.090 4.090 16 C -0.005 4.005 17 C -0.564 4.564 18 H 0.087 0.913 19 C -0.202 4.202 20 N -0.580 5.580 21 Si 0.786 3.214 22 H -0.189 1.189 23 H -0.216 1.216 24 H -0.191 1.191 25 C -0.160 4.160 26 C 0.014 3.986 27 C -0.103 4.103 28 H 0.096 0.904 29 C -0.212 4.212 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.053 0.947 38 H 0.090 0.910 39 H 0.244 0.756 40 H 0.105 0.895 41 H 0.112 0.888 42 H 0.060 0.940 43 H 0.096 0.904 44 H 0.084 0.916 45 H 0.000 1.000 46 H 0.004 0.996 47 H 0.069 0.931 48 H 0.060 0.940 49 H 0.090 0.910 50 H 0.096 0.904 51 H 0.100 0.900 52 H 0.071 0.929 53 H 0.082 0.918 54 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.234 14.695 -13.843 27.884 hybrid contribution 0.504 -1.309 0.815 1.622 sum -18.729 13.385 -13.028 26.452 Atomic orbital electron populations 1.21849 0.93734 1.02546 1.02071 1.21080 0.96507 0.98965 0.93551 0.91560 1.21646 0.94076 1.01506 0.97750 1.21467 0.96710 1.00305 0.96687 1.21922 0.99387 1.00335 0.95070 1.20854 0.94362 0.95363 0.82881 0.92008 1.45400 1.16279 1.45863 1.31442 1.16051 0.82513 0.80512 0.80569 1.90843 1.56086 1.43213 1.61592 1.47387 1.22399 1.43376 1.23091 1.21888 0.92750 0.87453 0.98260 1.21848 0.96639 0.96989 0.99554 1.21015 0.95322 0.95181 0.97472 1.19020 0.94294 0.92732 0.94413 1.21639 1.03230 1.03466 1.28055 0.91282 1.25995 0.95847 1.00087 0.98274 1.70113 1.17361 1.23759 1.46723 0.85557 0.78628 0.77796 0.79409 1.18852 1.21629 1.19125 1.21924 0.98753 0.95856 0.99490 1.21425 0.83040 0.96014 0.98098 1.21346 0.91508 0.98097 0.99392 0.90411 1.22032 1.02204 0.94889 1.02056 0.92514 0.92085 0.91693 0.90867 0.90917 0.92522 0.91361 0.94680 0.91027 0.75554 0.89498 0.88752 0.94016 0.90417 0.91615 1.00002 0.99639 0.93091 0.94031 0.91013 0.90392 0.90028 0.92944 0.91768 0.90572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 8.84 71.98 0.64 -0.64 16 2 C -0.08 -0.96 2.49 -10.79 -0.03 -0.98 16 3 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 4 C -0.11 -1.31 4.93 30.59 0.15 -1.16 16 5 C -0.11 -1.81 5.92 30.59 0.18 -1.63 16 6 C -0.13 -2.65 5.22 30.60 0.16 -2.49 16 7 C 0.17 3.47 2.11 45.01 0.10 3.56 16 8 H 0.06 1.55 7.65 -2.39 -0.02 1.54 16 9 N -0.73 -16.65 4.91 -457.71 -2.25 -18.90 16 10 C 0.70 21.57 8.26 179.05 1.48 23.05 16 11 O -0.64 -24.40 15.43 -3.97 -0.06 -24.46 16 12 N -0.63 -18.13 2.97 -836.05 -2.48 -20.61 16 13 C 0.12 2.94 6.42 86.51 0.56 3.49 16 14 C -0.11 -3.74 5.21 30.82 0.16 -3.58 16 15 C -0.07 -2.76 2.10 -10.77 -0.02 -2.78 16 16 C 0.03 1.68 4.45 29.85 0.13 1.81 16 17 C -0.53 -28.54 8.39 25.60 0.21 -28.33 16 18 H 0.07 3.48 7.06 -2.91 -0.02 3.46 16 19 C -0.01 -0.28 5.46 84.66 0.46 0.18 16 20 N -0.94 -57.24 13.29 21.45 0.28 -56.96 16 21 Si 0.96 43.23 29.54 68.60 2.03 45.26 16 22 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 23 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 24 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 25 C -0.12 -4.26 5.36 30.67 0.16 -4.09 16 26 C 0.14 4.15 6.44 86.36 0.56 4.70 16 27 C -0.08 -1.15 2.41 -10.78 -0.03 -1.18 16 28 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 29 C -0.15 -1.78 7.98 71.98 0.57 -1.21 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.06 0.51 6.43 -2.39 -0.02 0.50 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.07 0.79 6.43 -2.39 -0.02 0.77 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.03 0.96 8.10 -2.39 -0.02 0.94 16 38 H 0.07 1.37 6.43 -2.39 -0.02 1.35 16 39 H 0.40 7.34 4.35 -92.71 -0.40 6.94 16 40 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.09 1.79 5.64 -2.39 -0.01 1.78 16 42 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.08 2.69 6.91 -2.39 -0.02 2.68 16 44 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 45 H -0.02 -1.06 8.14 -2.38 -0.02 -1.08 16 46 H -0.01 -0.84 8.14 -2.38 -0.02 -0.86 16 47 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 48 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 50 H 0.08 2.52 7.00 -2.39 -0.02 2.50 16 51 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 52 H 0.05 0.60 6.51 -2.39 -0.02 0.59 16 53 H 0.06 0.78 4.81 -2.39 -0.01 0.77 16 54 H 0.08 0.69 6.43 -2.39 -0.02 0.67 16 Total: -1.00 -69.76 393.61 3.43 -66.33 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 0.46 Total: 20.60 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: 5.45 Total: -11.28 kcal Atomic # 7 Polarization: -92.02 SS G_CDS: -4.44 Total: -96.46 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.06 Total: -24.46 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -69.76 3.43 -66.33 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575271179.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.001 kcal (2) G-P(sol) polarization free energy of solvation -69.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds