Wall clock time and date at job start Tue Mar 31 2020 15:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47157 * 2 1 4 4 C 1.52998 * 109.46730 * 240.00236 * 2 1 3 5 5 C 1.53004 * 109.47006 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.46928 * 60.00171 * 5 4 2 7 7 C 1.52998 * 109.47137 * 299.99749 * 6 5 4 8 8 H 1.09003 * 109.47487 * 179.97438 * 7 6 5 9 9 N 1.46499 * 109.47413 * 300.00462 * 7 6 5 10 10 C 1.34779 * 120.00030 * 275.00080 * 9 7 6 11 11 O 1.21594 * 119.99766 * 5.05976 * 10 9 7 12 12 N 1.34775 * 120.00340 * 185.06654 * 10 9 7 13 13 C 1.46923 * 120.62869 * 354.96253 * 12 10 9 14 14 C 1.53190 * 108.77733 * 126.41314 * 13 12 10 15 15 C 1.53043 * 109.31229 * 54.63515 * 14 13 12 16 16 C 1.53004 * 109.46106 * 178.61703 * 15 14 13 17 17 C 1.50697 * 109.46800 * 184.99795 * 16 15 14 18 18 H 1.08001 * 120.00364 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99795 * 179.97438 * 17 16 15 20 20 N 1.31522 * 119.99654 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00094 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47315 * 89.99623 * 21 19 17 23 23 H 1.48509 * 109.47161 * 210.00064 * 21 19 17 24 24 H 1.48502 * 109.47209 * 329.99789 * 21 19 17 25 25 C 1.53049 * 109.53388 * 298.63355 * 15 14 13 26 26 C 1.46921 * 120.63092 * 174.98396 * 12 10 9 27 27 C 1.53002 * 109.47216 * 120.00399 * 2 1 3 28 28 H 1.08999 * 109.47384 * 59.99739 * 27 2 1 29 29 C 1.52997 * 109.46730 * 299.99945 * 27 2 1 30 30 H 1.08999 * 109.47157 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47268 * 299.99756 * 1 2 3 32 32 H 1.08997 * 109.47379 * 59.99669 * 1 2 3 33 33 H 1.09003 * 109.47487 * 60.00166 * 4 2 1 34 34 H 1.08997 * 109.47623 * 299.99817 * 4 2 1 35 35 H 1.08999 * 109.47169 * 299.99940 * 5 4 2 36 36 H 1.09004 * 109.47094 * 179.97438 * 5 4 2 37 37 H 1.09002 * 109.47266 * 180.02562 * 6 5 4 38 38 H 1.08999 * 109.47384 * 59.99901 * 6 5 4 39 39 H 0.97002 * 120.00310 * 94.99416 * 9 7 6 40 40 H 1.09000 * 109.59052 * 6.62375 * 13 12 10 41 41 H 1.09000 * 109.70512 * 246.27296 * 13 12 10 42 42 H 1.08995 * 109.49919 * 294.68350 * 14 13 12 43 43 H 1.09000 * 109.52791 * 174.60003 * 14 13 12 44 44 H 1.08997 * 109.45961 * 58.65324 * 15 14 13 45 45 H 1.09001 * 109.46717 * 305.00168 * 16 15 14 46 46 H 1.08999 * 109.47264 * 64.99684 * 16 15 14 47 47 H 0.96998 * 119.99263 * 180.02562 * 20 19 17 48 48 H 1.08998 * 109.49406 * 181.31462 * 25 15 14 49 49 H 1.08993 * 109.50096 * 301.41151 * 25 15 14 50 50 H 1.09006 * 109.58853 * 353.37230 * 26 12 10 51 51 H 1.09002 * 109.58761 * 113.65551 * 26 12 10 52 52 H 1.09007 * 109.47091 * 299.99696 * 29 27 2 53 53 H 1.08995 * 109.47578 * 59.99813 * 29 27 2 54 54 H 1.09000 * 109.46877 * 180.02562 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5699 -0.7207 -1.2497 6 6 4.0804 -1.4417 -0.0005 7 6 3.5705 -0.7205 1.2488 8 1 3.9338 -1.2344 2.1388 9 7 4.0583 0.6609 1.2486 10 6 5.2804 0.9442 1.7415 11 8 6.0144 0.0440 2.1013 12 7 5.6888 2.2251 1.8357 13 6 4.8601 3.3159 1.3047 14 6 4.6364 4.3496 2.4130 15 6 5.9905 4.8006 2.9653 16 6 5.7723 5.8586 4.0488 17 6 7.1056 6.3915 4.5063 18 1 8.0175 6.0131 4.0684 19 6 7.1614 7.3621 5.4840 20 7 6.0509 7.8232 6.0169 21 14 8.8140 8.0232 6.0505 22 1 9.1916 9.1927 5.2169 23 1 8.7195 8.4391 7.4730 24 1 9.8449 6.9633 5.9122 25 6 6.7239 3.5992 3.5662 26 6 6.9713 2.5571 2.4709 27 6 2.0400 -0.7213 1.2492 28 1 1.6767 -1.7490 1.2492 29 6 1.5300 -0.0001 2.4984 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.6766 -0.2073 -2.1393 34 1 1.6766 -1.7488 -1.2494 35 1 3.9329 0.3071 -1.2499 36 1 3.9332 -1.2349 -2.1395 37 1 5.1705 -1.4409 -0.0005 38 1 3.7174 -2.4695 -0.0003 39 1 3.5019 1.3718 0.8936 40 1 3.8997 2.9187 0.9762 41 1 5.3678 3.7868 0.4629 42 1 4.0474 3.9026 3.2138 43 1 4.1044 5.2099 2.0068 44 1 6.5885 5.2249 2.1589 45 1 5.1741 6.6750 3.6442 46 1 5.2506 5.4104 4.8945 47 1 6.0902 8.5064 6.7044 48 1 7.6780 3.9253 3.9802 49 1 6.1154 3.1593 4.3562 50 1 7.4039 1.6590 2.9121 51 1 7.6544 2.9631 1.7248 52 1 1.8934 1.0276 2.4985 53 1 0.4401 0.0000 2.4985 54 1 1.8937 -0.5137 3.3884 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575271181.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:47 Heat of formation + Delta-G solvation = -82.586063 kcal Electronic energy + Delta-G solvation = -29142.164558 eV Core-core repulsion = 25497.447864 eV Total energy + Delta-G solvation = -3644.716694 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.79825 -40.17813 -38.58217 -35.71297 -35.12932 -34.03017 -33.81363 -32.24844 -31.38148 -29.66926 -27.99451 -26.56545 -26.17809 -24.19470 -23.66786 -22.81285 -21.97802 -21.51701 -20.59812 -19.85052 -19.14557 -18.37628 -17.20195 -16.67691 -16.52963 -16.01292 -15.90894 -15.58742 -15.29277 -15.15637 -15.00821 -14.81552 -14.50756 -14.46716 -14.21185 -14.06749 -13.82829 -13.41215 -13.23403 -13.02651 -12.91580 -12.73851 -12.71410 -12.68576 -12.50110 -12.36608 -12.32544 -12.27916 -12.09451 -11.79027 -11.70691 -11.35755 -11.32084 -11.23963 -11.04148 -11.00935 -10.86531 -10.76998 -10.51310 -10.08044 -9.40358 -8.16783 -6.25437 1.40393 1.41158 1.51761 1.69704 2.18665 2.42414 2.94368 3.16989 3.67196 3.75638 3.79846 3.91541 4.00450 4.08030 4.12458 4.22030 4.22496 4.42335 4.44231 4.49839 4.50626 4.54311 4.64976 4.65724 4.67985 4.78156 4.81587 4.89130 4.90673 4.93158 5.00348 5.04089 5.08217 5.11718 5.13813 5.18507 5.24249 5.31086 5.32629 5.33893 5.38972 5.41508 5.42120 5.54744 5.56053 5.59644 5.61960 5.71841 5.82108 5.90920 6.03147 6.30701 6.91246 7.00854 7.42991 7.60039 8.94994 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.022579 B = 0.002702 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.775403 B =10360.483005 C =10917.048975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 H 0.064 0.936 4 C -0.108 4.108 5 C -0.113 4.113 6 C -0.127 4.127 7 C 0.168 3.832 8 H 0.059 0.941 9 N -0.723 5.723 10 C 0.703 3.297 11 O -0.636 6.636 12 N -0.626 5.626 13 C 0.120 3.880 14 C -0.123 4.123 15 C -0.072 4.072 16 C 0.034 3.966 17 C -0.528 4.528 18 H 0.062 0.938 19 C -0.002 4.002 20 N -0.935 5.935 21 Si 0.957 3.043 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.264 1.264 25 C -0.109 4.109 26 C 0.138 3.862 27 C -0.083 4.083 28 H 0.096 0.904 29 C -0.149 4.149 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.040 0.960 38 H 0.082 0.918 39 H 0.403 0.597 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.049 0.951 43 H 0.081 0.919 44 H 0.063 0.937 45 H -0.008 1.008 46 H -0.017 1.017 47 H 0.261 0.739 48 H 0.067 0.933 49 H 0.038 0.962 50 H 0.074 0.926 51 H 0.076 0.924 52 H 0.046 0.954 53 H 0.074 0.926 54 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.948 -17.772 -16.894 27.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.104 4.104 3 H 0.082 0.918 4 C -0.146 4.146 5 C -0.151 4.151 6 C -0.165 4.165 7 C 0.063 3.937 8 H 0.077 0.923 9 N -0.382 5.382 10 C 0.404 3.596 11 O -0.518 6.518 12 N -0.362 5.362 13 C -0.002 4.002 14 C -0.161 4.161 15 C -0.091 4.091 16 C -0.003 4.003 17 C -0.566 4.566 18 H 0.081 0.919 19 C -0.199 4.199 20 N -0.576 5.576 21 Si 0.782 3.218 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.188 1.188 25 C -0.147 4.147 26 C 0.015 3.985 27 C -0.102 4.102 28 H 0.115 0.885 29 C -0.206 4.206 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.101 0.899 39 H 0.243 0.757 40 H 0.113 0.887 41 H 0.103 0.897 42 H 0.068 0.932 43 H 0.099 0.901 44 H 0.082 0.918 45 H 0.011 0.989 46 H 0.002 0.998 47 H 0.070 0.930 48 H 0.085 0.915 49 H 0.057 0.943 50 H 0.092 0.908 51 H 0.094 0.906 52 H 0.065 0.935 53 H 0.093 0.907 54 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.508 -18.306 -16.507 27.203 hybrid contribution 0.748 1.117 0.929 1.634 sum -10.760 -17.189 -15.579 25.572 Atomic orbital electron populations 1.21863 0.94024 1.02360 1.02134 1.21143 0.96416 0.99000 0.93800 0.91782 1.21583 0.94235 1.01296 0.97473 1.21453 0.96436 1.00265 0.96949 1.21882 0.99770 0.99958 0.94933 1.20872 0.94165 0.80754 0.97952 0.92261 1.45288 1.15834 1.10701 1.66370 1.16034 0.82520 0.82600 0.78398 1.90848 1.56158 1.46254 1.58544 1.47349 1.22378 1.04495 1.62021 1.21744 0.95186 0.87207 0.96077 1.21924 0.97276 0.98801 0.98100 1.21023 0.95756 0.94737 0.97547 1.19007 0.95293 0.92982 0.93016 1.21685 0.94039 1.20638 1.20244 0.91950 1.25921 0.99920 0.97220 0.96849 1.70100 1.28817 1.30242 1.28477 0.85566 0.80039 0.78891 0.77293 1.19808 1.21228 1.18826 1.21755 1.00954 0.95061 0.96960 1.21412 0.84090 0.98123 0.94921 1.21423 0.91728 1.01576 0.95505 0.88541 1.21876 1.01865 1.00114 0.96753 0.92070 0.92333 0.92161 0.91049 0.91056 0.92929 0.91617 0.94100 0.89948 0.75717 0.88653 0.89695 0.93189 0.90059 0.91836 0.98944 0.99841 0.93034 0.91468 0.94316 0.90776 0.90618 0.93478 0.90704 0.93774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.84 71.98 0.64 -0.69 16 2 C -0.08 -0.93 2.08 -10.79 -0.02 -0.95 16 3 H 0.06 0.75 6.50 -2.39 -0.02 0.73 16 4 C -0.11 -1.12 5.20 30.59 0.16 -0.96 16 5 C -0.11 -1.60 5.77 30.60 0.18 -1.43 16 6 C -0.13 -2.28 5.60 30.59 0.17 -2.11 16 7 C 0.17 3.29 2.19 45.01 0.10 3.39 16 8 H 0.06 1.49 7.66 -2.39 -0.02 1.47 16 9 N -0.72 -15.81 3.45 -457.72 -1.58 -17.39 16 10 C 0.70 21.27 8.26 179.05 1.48 22.75 16 11 O -0.64 -24.35 15.45 -4.01 -0.06 -24.41 16 12 N -0.63 -18.04 2.97 -836.91 -2.49 -20.52 16 13 C 0.12 2.79 6.43 86.36 0.56 3.34 16 14 C -0.12 -3.69 5.36 30.67 0.16 -3.53 16 15 C -0.07 -2.77 2.10 -10.76 -0.02 -2.79 16 16 C 0.03 1.74 4.45 29.85 0.13 1.87 16 17 C -0.53 -29.26 8.39 25.60 0.21 -29.04 16 18 H 0.06 3.31 7.06 -2.91 -0.02 3.29 16 19 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 20 N -0.94 -56.90 13.29 21.45 0.28 -56.61 16 21 Si 0.96 44.32 29.54 68.60 2.03 46.34 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 23 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 24 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 25 C -0.11 -4.08 5.19 30.68 0.16 -3.92 16 26 C 0.14 4.40 6.42 86.36 0.55 4.96 16 27 C -0.08 -1.14 2.05 -10.78 -0.02 -1.16 16 28 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 29 C -0.15 -2.29 8.68 71.98 0.63 -1.67 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.56 6.43 -2.39 -0.02 0.55 16 32 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.05 0.84 7.60 -2.39 -0.02 0.82 16 36 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.04 0.98 8.09 -2.39 -0.02 0.96 16 38 H 0.08 1.22 8.14 -2.39 -0.02 1.21 16 39 H 0.40 7.07 4.11 -92.71 -0.38 6.69 16 40 H 0.10 1.63 5.57 -2.39 -0.01 1.62 16 41 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 45 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 46 H -0.02 -0.96 8.14 -2.39 -0.02 -0.97 16 47 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 48 H 0.07 2.71 6.91 -2.39 -0.02 2.69 16 49 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.07 2.56 7.04 -2.38 -0.02 2.54 16 51 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 52 H 0.05 0.82 7.45 -2.38 -0.02 0.80 16 53 H 0.07 0.93 6.43 -2.39 -0.02 0.91 16 54 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -69.59 397.89 4.17 -65.42 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.47 Total: 18.76 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: 5.52 Total: -11.58 kcal Atomic # 7 Polarization: -90.74 SS G_CDS: -3.78 Total: -94.52 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.06 Total: -24.41 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -69.59 4.17 -65.42 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575271181.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.170 kcal (2) G-P(sol) polarization free energy of solvation -69.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds