Wall clock time and date at job start Tue Mar 31 2020 15:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46880 * 2 1 4 4 C 1.52992 * 109.47377 * 239.99583 * 2 1 3 5 5 C 1.53007 * 109.46937 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.46764 * 60.00538 * 5 4 2 7 7 C 1.53009 * 109.46859 * 299.99402 * 6 5 4 8 8 H 1.08991 * 109.47188 * 300.00334 * 7 6 5 9 9 N 1.46501 * 109.46757 * 180.02562 * 7 6 5 10 10 C 1.34774 * 119.99906 * 85.00324 * 9 7 6 11 11 O 1.21584 * 120.00205 * 5.07693 * 10 9 7 12 12 N 1.34779 * 119.99815 * 185.07267 * 10 9 7 13 13 C 1.46930 * 120.63018 * 174.96099 * 12 10 9 14 14 C 1.53184 * 108.77599 * 233.59137 * 13 12 10 15 15 C 1.53045 * 109.31558 * 305.36542 * 14 13 12 16 16 C 1.53001 * 109.46258 * 181.38856 * 15 14 13 17 17 C 1.50698 * 109.47170 * 175.00165 * 16 15 14 18 18 H 1.08004 * 119.99789 * 359.72012 * 17 16 15 19 19 C 1.37873 * 119.99858 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00011 * 359.72067 * 19 17 16 21 21 Si 1.86805 * 119.99949 * 179.72190 * 19 17 16 22 22 H 1.48504 * 109.46800 * 59.99896 * 21 19 17 23 23 H 1.48497 * 109.46970 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47049 * 300.00070 * 21 19 17 25 25 C 1.53035 * 109.53475 * 61.36578 * 15 14 13 26 26 C 1.46926 * 120.63157 * 354.95001 * 12 10 9 27 27 C 1.52999 * 109.46864 * 119.99278 * 2 1 3 28 28 H 1.08999 * 109.47239 * 60.00638 * 27 2 1 29 29 C 1.53005 * 109.47603 * 300.00351 * 27 2 1 30 30 H 1.08992 * 109.47461 * 300.00553 * 1 2 3 31 31 H 1.09000 * 109.46711 * 60.00961 * 1 2 3 32 32 H 1.09004 * 109.46880 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47207 * 299.99657 * 4 2 1 34 34 H 1.09007 * 109.47274 * 60.00157 * 4 2 1 35 35 H 1.08998 * 109.46608 * 179.97438 * 5 4 2 36 36 H 1.08999 * 109.47140 * 300.00003 * 5 4 2 37 37 H 1.08999 * 109.47220 * 179.97438 * 6 5 4 38 38 H 1.08999 * 109.47729 * 59.99825 * 6 5 4 39 39 H 0.97006 * 119.99759 * 265.00242 * 9 7 6 40 40 H 1.09000 * 109.58056 * 113.80644 * 13 12 10 41 41 H 1.08993 * 109.70220 * 353.45047 * 13 12 10 42 42 H 1.09001 * 109.49552 * 185.41891 * 14 13 12 43 43 H 1.08996 * 109.52879 * 65.33469 * 14 13 12 44 44 H 1.09006 * 109.45588 * 301.36042 * 15 14 13 45 45 H 1.09002 * 109.46787 * 54.99637 * 16 15 14 46 46 H 1.08998 * 109.46706 * 295.00327 * 16 15 14 47 47 H 0.96999 * 119.99906 * 180.02562 * 20 19 17 48 48 H 1.09000 * 109.50126 * 58.59336 * 25 15 14 49 49 H 1.09002 * 109.49535 * 178.68627 * 25 15 14 50 50 H 1.09005 * 109.58439 * 246.20062 * 26 12 10 51 51 H 1.09000 * 109.58967 * 6.61763 * 26 12 10 52 52 H 1.08999 * 109.47057 * 300.00399 * 29 27 2 53 53 H 1.08999 * 109.46645 * 59.99791 * 29 27 2 54 54 H 1.08990 * 109.47353 * 180.02562 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5702 -0.7207 -1.2493 6 6 4.0805 -1.4416 -0.0001 7 6 3.5704 -0.7202 1.2492 8 1 3.9334 0.3075 1.2489 9 7 4.0597 -1.4101 2.4454 10 6 5.2816 -1.1233 2.9364 11 8 5.9402 -0.2281 2.4432 12 7 5.7734 -1.8287 3.9741 13 6 7.1452 -1.6030 4.4497 14 6 7.8850 -2.9441 4.4757 15 6 7.0866 -3.9464 5.3125 16 6 7.8397 -5.2771 5.3694 17 6 7.1170 -6.2243 6.2922 18 1 6.2135 -5.9072 6.7919 19 6 7.6125 -7.4934 6.5033 20 7 8.7129 -7.8793 5.8952 21 14 6.7208 -8.6649 7.6531 22 1 5.3422 -8.8967 7.1520 23 1 7.4511 -9.9568 7.7073 24 1 6.6600 -8.0726 9.0135 25 6 5.7125 -4.1651 4.6754 26 6 4.9480 -2.8379 4.6516 27 6 2.0400 -0.7211 1.2493 28 1 1.6767 -1.7488 1.2494 29 6 1.5299 0.0002 2.4986 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.6768 -1.7490 -1.2490 34 1 1.6768 -0.2075 -2.1392 35 1 3.9335 -1.2350 -2.1390 36 1 3.9331 0.3071 -1.2496 37 1 5.1705 -1.4416 -0.0004 38 1 3.7176 -2.4694 0.0002 39 1 3.5041 -2.0734 2.8840 40 1 7.1187 -1.1807 5.4542 41 1 7.6586 -0.9154 3.7776 42 1 8.8721 -2.8065 4.9170 43 1 7.9905 -3.3217 3.4587 44 1 6.9605 -3.5570 6.3228 45 1 8.8500 -5.1071 5.7417 46 1 7.8888 -5.7097 4.3702 47 1 9.0613 -8.7723 6.0434 48 1 5.8379 -4.5311 3.6564 49 1 5.1533 -4.8966 5.2588 50 1 4.7423 -2.5162 5.6726 51 1 4.0103 -2.9659 4.1109 52 1 1.8932 1.0279 2.4985 53 1 0.4399 0.0002 2.4985 54 1 1.8936 -0.5132 3.3885 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575271182.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:51 Heat of formation + Delta-G solvation = -86.597920 kcal Electronic energy + Delta-G solvation = -28703.442853 eV Core-core repulsion = 25058.552191 eV Total energy + Delta-G solvation = -3644.890661 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.67168 -40.13483 -38.64077 -35.72041 -35.51803 -34.04513 -33.88118 -32.21037 -31.18163 -29.68663 -27.95585 -26.58631 -26.10997 -24.19777 -23.76385 -22.45723 -21.97360 -21.31952 -21.03829 -20.13427 -19.03307 -18.38693 -17.39382 -16.55309 -16.47349 -16.09289 -15.63815 -15.56465 -15.43403 -15.18057 -15.12063 -14.92966 -14.62752 -14.40987 -14.27141 -13.87966 -13.72130 -13.50433 -13.35568 -12.97538 -12.94336 -12.76296 -12.72662 -12.59533 -12.47663 -12.41861 -12.31892 -12.15284 -11.97078 -11.76141 -11.75878 -11.45776 -11.32517 -11.28913 -11.10138 -11.02707 -10.90861 -10.84187 -10.50478 -10.09799 -9.41910 -8.14977 -6.24796 1.42529 1.44935 1.52383 1.66925 2.16561 2.43866 2.90686 3.18704 3.62043 3.77008 3.85771 3.94317 4.01172 4.08756 4.10348 4.18974 4.21387 4.39666 4.42620 4.45872 4.51260 4.52020 4.54897 4.67517 4.71514 4.74865 4.81516 4.86596 4.90648 4.97009 4.99430 5.01255 5.08035 5.10306 5.13567 5.18416 5.23954 5.27206 5.31774 5.33347 5.36338 5.37917 5.40438 5.54440 5.56185 5.59175 5.61272 5.68709 5.82746 5.90708 6.02283 6.30152 6.92075 6.98544 7.44043 7.57775 8.96875 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.017683 B = 0.002619 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.070058 B =10690.367210 C =11206.226384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 H 0.066 0.934 4 C -0.111 4.111 5 C -0.114 4.114 6 C -0.128 4.128 7 C 0.170 3.830 8 H 0.063 0.937 9 N -0.730 5.730 10 C 0.704 3.296 11 O -0.636 6.636 12 N -0.626 5.626 13 C 0.138 3.862 14 C -0.121 4.121 15 C -0.072 4.072 16 C 0.033 3.967 17 C -0.526 4.526 18 H 0.069 0.931 19 C -0.005 4.005 20 N -0.939 5.939 21 Si 0.961 3.039 22 H -0.264 1.264 23 H -0.290 1.290 24 H -0.267 1.267 25 C -0.112 4.112 26 C 0.119 3.881 27 C -0.084 4.084 28 H 0.085 0.915 29 C -0.146 4.146 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.035 0.965 38 H 0.068 0.932 39 H 0.405 0.595 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.043 0.957 44 H 0.064 0.936 45 H -0.015 1.015 46 H -0.017 1.017 47 H 0.260 0.740 48 H 0.043 0.957 49 H 0.077 0.923 50 H 0.084 0.916 51 H 0.096 0.904 52 H 0.045 0.955 53 H 0.075 0.925 54 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.127 16.026 -10.592 27.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.100 4.100 3 H 0.084 0.916 4 C -0.149 4.149 5 C -0.152 4.152 6 C -0.167 4.167 7 C 0.065 3.935 8 H 0.082 0.918 9 N -0.387 5.387 10 C 0.406 3.594 11 O -0.518 6.518 12 N -0.362 5.362 13 C 0.015 3.985 14 C -0.160 4.160 15 C -0.090 4.090 16 C -0.004 4.004 17 C -0.564 4.564 18 H 0.087 0.913 19 C -0.202 4.202 20 N -0.579 5.579 21 Si 0.786 3.214 22 H -0.188 1.188 23 H -0.216 1.216 24 H -0.192 1.192 25 C -0.150 4.150 26 C -0.003 4.003 27 C -0.103 4.103 28 H 0.103 0.897 29 C -0.203 4.203 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.086 0.914 39 H 0.244 0.756 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.061 0.939 44 H 0.082 0.918 45 H 0.003 0.997 46 H 0.001 0.999 47 H 0.069 0.931 48 H 0.062 0.938 49 H 0.095 0.905 50 H 0.102 0.898 51 H 0.115 0.885 52 H 0.064 0.936 53 H 0.094 0.906 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.553 16.520 -10.958 27.152 hybrid contribution 0.466 -1.400 0.690 1.629 sum -18.088 15.120 -10.268 25.714 Atomic orbital electron populations 1.21851 0.93714 1.02341 1.02292 1.21099 0.96528 0.99150 0.93245 0.91555 1.21615 0.94085 1.01258 0.97906 1.21472 0.96707 1.00336 0.96669 1.21917 0.99442 1.00134 0.95214 1.20884 0.94322 0.95633 0.82650 0.91840 1.45295 1.16389 1.45765 1.31282 1.16003 0.82197 0.81453 0.79752 1.90842 1.61319 1.35298 1.64360 1.47374 1.15131 1.40262 1.33441 1.21392 0.80689 0.96477 0.99940 1.21923 0.99205 0.95151 0.99696 1.21019 0.95096 0.94840 0.98066 1.19014 0.94278 0.92476 0.94651 1.21639 1.10148 0.98118 1.26478 0.91329 1.25986 0.95812 1.00480 0.97880 1.70113 1.23121 1.19707 1.45008 0.85564 0.78808 0.77598 0.79467 1.18844 1.21619 1.19175 1.21769 0.96267 0.96717 1.00254 1.21800 0.93297 0.86898 0.98346 1.21397 0.91557 1.01192 0.96198 0.89716 1.21860 1.01846 0.99948 0.96648 0.91964 0.92071 0.92228 0.91336 0.90713 0.91309 0.92416 0.94604 0.91366 0.75611 0.90328 0.90448 0.91033 0.93854 0.91767 0.99695 0.99889 0.93091 0.93836 0.90456 0.89750 0.88549 0.93558 0.90632 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.84 71.98 0.64 -0.68 16 2 C -0.08 -0.97 2.25 -10.79 -0.02 -1.00 16 3 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 4 C -0.11 -1.34 5.20 30.59 0.16 -1.18 16 5 C -0.11 -1.84 5.92 30.60 0.18 -1.66 16 6 C -0.13 -2.67 5.49 30.60 0.17 -2.50 16 7 C 0.17 3.48 1.94 45.01 0.09 3.57 16 8 H 0.06 1.63 7.51 -2.39 -0.02 1.61 16 9 N -0.73 -16.47 4.30 -457.74 -1.97 -18.44 16 10 C 0.70 21.41 8.26 179.05 1.48 22.89 16 11 O -0.64 -24.20 15.41 -3.98 -0.06 -24.27 16 12 N -0.63 -17.98 2.97 -836.93 -2.49 -20.47 16 13 C 0.14 4.17 6.41 86.36 0.55 4.72 16 14 C -0.12 -4.20 5.36 30.67 0.16 -4.03 16 15 C -0.07 -2.76 2.10 -10.77 -0.02 -2.78 16 16 C 0.03 1.69 4.45 29.85 0.13 1.82 16 17 C -0.53 -28.46 8.38 25.60 0.21 -28.25 16 18 H 0.07 3.45 7.07 -2.91 -0.02 3.43 16 19 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 20 N -0.94 -57.08 13.29 21.45 0.28 -56.79 16 21 Si 0.96 43.16 29.54 68.60 2.03 45.19 16 22 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 23 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 25 C -0.11 -3.69 5.19 30.67 0.16 -3.53 16 26 C 0.12 2.92 6.43 86.36 0.56 3.47 16 27 C -0.08 -1.17 1.83 -10.78 -0.02 -1.19 16 28 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 29 C -0.15 -1.94 8.68 71.98 0.63 -1.32 16 30 H 0.06 0.53 6.43 -2.39 -0.02 0.52 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 0.75 8.14 -2.38 -0.02 0.74 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.41 7.23 5.85 -92.70 -0.54 6.68 16 40 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.08 2.49 7.04 -2.39 -0.02 2.48 16 42 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.04 1.62 8.14 -2.39 -0.02 1.61 16 44 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 45 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 46 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 47 H 0.26 15.02 8.31 -92.71 -0.77 14.24 16 48 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.08 2.66 6.92 -2.39 -0.02 2.64 16 50 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 51 H 0.10 1.78 5.57 -2.39 -0.01 1.77 16 52 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 53 H 0.07 0.77 6.43 -2.39 -0.02 0.76 16 54 H 0.05 0.74 7.45 -2.39 -0.02 0.72 16 Total: -1.00 -69.29 402.29 3.61 -65.67 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.31 Total: 20.54 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: 5.51 Total: -11.43 kcal Atomic # 7 Polarization: -91.53 SS G_CDS: -4.17 Total: -95.70 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.06 Total: -24.27 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -69.29 3.61 -65.67 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575271182.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.924 kcal (2) G-P(sol) polarization free energy of solvation -69.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds