Wall clock time and date at job start Tue Mar 31 2020 15:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47078 * 2 1 4 4 C 1.53006 * 109.47319 * 239.99623 * 2 1 3 5 5 C 1.52995 * 109.47117 * 300.00480 * 4 2 1 6 6 C 1.53008 * 109.46966 * 299.99580 * 5 4 2 7 7 C 1.52997 * 109.46938 * 60.00445 * 6 5 4 8 8 H 1.08998 * 109.47476 * 59.99878 * 7 6 5 9 9 C 1.53001 * 109.47083 * 179.97438 * 7 6 5 10 10 N 1.46499 * 109.47138 * 295.00043 * 9 7 6 11 11 C 1.34777 * 119.99627 * 180.02562 * 10 9 7 12 12 O 1.21584 * 120.00319 * 4.95928 * 11 10 9 13 13 N 1.34780 * 119.99414 * 184.96578 * 11 10 9 14 14 C 1.46915 * 120.63612 * 355.07490 * 13 11 10 15 15 C 1.53194 * 108.78003 * 233.63550 * 14 13 11 16 16 C 1.53038 * 109.30988 * 305.36354 * 15 14 13 17 17 C 1.50695 * 109.45979 * 181.38477 * 16 15 14 18 18 H 1.08003 * 119.99952 * 354.29691 * 17 16 15 19 19 C 1.37885 * 120.00206 * 174.28844 * 17 16 15 20 20 N 1.31513 * 119.99843 * 157.01253 * 19 17 16 21 21 Si 1.86796 * 119.99848 * 336.74292 * 19 17 16 22 22 H 1.48500 * 109.47192 * 270.26970 * 21 19 17 23 23 H 1.48502 * 109.47032 * 30.27410 * 21 19 17 24 24 H 1.48503 * 109.46879 * 150.27154 * 21 19 17 25 25 C 1.53044 * 109.52860 * 61.37067 * 16 15 14 26 26 C 1.46932 * 120.62577 * 175.10224 * 13 11 10 27 27 C 1.53001 * 109.46783 * 119.99853 * 2 1 3 28 28 H 1.09007 * 109.47087 * 179.97438 * 27 2 1 29 29 C 1.52996 * 109.47377 * 299.99904 * 27 2 1 30 30 H 1.08997 * 109.47078 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47430 * 300.00059 * 1 2 3 32 32 H 1.08998 * 109.46847 * 60.00494 * 1 2 3 33 33 H 1.08998 * 109.46886 * 179.97438 * 4 2 1 34 34 H 1.08997 * 109.46792 * 60.00390 * 4 2 1 35 35 H 1.08995 * 109.47252 * 180.02562 * 5 4 2 36 36 H 1.08998 * 109.47287 * 59.99604 * 5 4 2 37 37 H 1.08998 * 109.47137 * 300.00115 * 6 5 4 38 38 H 1.08998 * 109.46667 * 179.97438 * 6 5 4 39 39 H 1.08996 * 109.46992 * 174.99636 * 9 7 6 40 40 H 1.09004 * 109.47170 * 54.99959 * 9 7 6 41 41 H 0.96997 * 120.00169 * 359.97438 * 10 9 7 42 42 H 1.09000 * 109.59014 * 113.84379 * 14 13 11 43 43 H 1.09006 * 109.70153 * 353.49394 * 14 13 11 44 44 H 1.09001 * 109.49530 * 185.41043 * 15 14 13 45 45 H 1.08995 * 109.52200 * 65.33038 * 15 14 13 46 46 H 1.09006 * 109.45749 * 301.35695 * 16 15 14 47 47 H 0.96997 * 119.99983 * 354.67359 * 20 19 17 48 48 H 1.08997 * 109.49438 * 58.57598 * 25 16 15 49 49 H 1.08993 * 109.49828 * 178.67521 * 25 16 15 50 50 H 1.08998 * 109.58450 * 246.15238 * 26 13 11 51 51 H 1.08996 * 109.58964 * 6.43693 * 26 13 11 52 52 H 1.08998 * 109.47628 * 180.02562 * 29 27 2 53 53 H 1.08997 * 109.47215 * 300.00301 * 29 27 2 54 54 H 1.08998 * 109.47132 * 60.00149 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5300 -2.1638 -1.2492 6 6 2.0400 -2.8850 0.0001 7 6 1.5299 -2.1638 1.2493 8 1 0.4400 -2.1637 1.2493 9 6 2.0394 -2.8853 2.4986 10 7 1.4548 -4.2272 2.5600 11 6 1.7624 -5.0501 3.5821 12 8 2.4524 -4.6488 4.4992 13 7 1.3052 -6.3180 3.5874 14 6 0.3836 -6.7859 2.5433 15 6 -0.8545 -7.3903 3.2131 16 6 -0.4173 -8.4767 4.1984 17 6 -1.6346 -9.0971 4.8342 18 1 -2.6150 -8.6909 4.6334 19 6 -1.4968 -10.1833 5.6722 20 7 -2.4274 -10.4491 6.5627 21 14 0.0080 -11.2818 5.5375 22 1 -0.2605 -12.3723 4.5659 23 1 1.1672 -10.4786 5.0723 24 1 0.3137 -11.8678 6.8673 25 6 0.4654 -7.8572 5.2843 26 6 1.7186 -7.2583 4.6380 27 6 2.0399 -0.7212 1.2493 28 1 3.1300 -0.7217 1.2491 29 6 1.5299 0.0000 2.4985 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 3.1300 -0.7209 -1.2494 34 1 1.6768 -0.2075 -2.1392 35 1 1.8937 -2.6778 -2.1389 36 1 0.4400 -2.1638 -1.2492 37 1 3.1300 -2.8851 0.0001 38 1 1.6762 -3.9125 0.0003 39 1 1.7510 -2.3224 3.3862 40 1 3.1257 -2.9639 2.4552 41 1 0.8458 -4.5232 1.8655 42 1 0.8761 -7.5437 1.9340 43 1 0.0858 -5.9476 1.9134 44 1 -1.5022 -7.8276 2.4532 45 1 -1.3964 -6.6106 3.7481 46 1 0.1456 -9.2439 3.6667 47 1 -3.1717 -9.8389 6.6831 48 1 -0.0886 -7.0727 5.7997 49 1 0.7571 -8.6268 5.9989 50 1 2.3199 -8.0547 4.1996 51 1 2.3039 -6.7307 5.3910 52 1 1.8936 -0.5135 3.3885 53 1 1.8933 1.0276 2.4985 54 1 0.4400 0.0000 2.4985 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580269737.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:44 Heat of formation + Delta-G solvation = -81.271352 kcal Electronic energy + Delta-G solvation = -28803.875194 eV Core-core repulsion = 25159.215510 eV Total energy + Delta-G solvation = -3644.659684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.56213 -40.57068 -38.64677 -36.14330 -35.39956 -33.75717 -33.46882 -32.62532 -31.73536 -28.79721 -27.95681 -27.02959 -25.86663 -24.42379 -23.86696 -22.49262 -21.88634 -21.63898 -20.47009 -19.67690 -19.33244 -19.00357 -17.35598 -16.71462 -16.31070 -16.03207 -15.86388 -15.51412 -15.41314 -15.29135 -15.18446 -14.89543 -14.73498 -14.57365 -14.34553 -13.96887 -13.76859 -13.58997 -13.35705 -13.13785 -13.08020 -12.82603 -12.64666 -12.53428 -12.39934 -12.30569 -12.18083 -12.11383 -11.82636 -11.68110 -11.54521 -11.49474 -11.40182 -11.12100 -11.06130 -10.88624 -10.80996 -10.74895 -10.35525 -10.16844 -9.43187 -8.69391 -6.30800 1.51319 1.55362 1.68628 1.74519 2.12810 2.54466 2.93020 3.05608 3.63521 3.71392 3.78628 3.97971 4.09517 4.12885 4.23262 4.25252 4.28984 4.31711 4.46776 4.49099 4.50078 4.50896 4.57289 4.62214 4.67384 4.70399 4.80831 4.82612 4.82976 4.87104 4.96809 5.00213 5.03667 5.06294 5.11122 5.14443 5.18551 5.22850 5.25889 5.31461 5.38317 5.40946 5.43737 5.49927 5.51956 5.58646 5.62502 5.72969 5.74409 6.01303 6.05291 6.17763 6.62494 6.97269 7.44194 7.54916 8.63899 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.024330 B = 0.002580 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.558414 B =10850.856132 C =11054.309137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.081 4.081 3 H 0.073 0.927 4 C -0.114 4.114 5 C -0.119 4.119 6 C -0.113 4.113 7 C -0.085 4.085 8 H 0.082 0.918 9 C 0.142 3.858 10 N -0.732 5.732 11 C 0.701 3.299 12 O -0.639 6.639 13 N -0.624 5.624 14 C 0.118 3.882 15 C -0.111 4.111 16 C 0.020 3.980 17 C -0.607 4.607 18 H 0.014 0.986 19 C -0.019 4.019 20 N -0.938 5.938 21 Si 1.081 2.919 22 H -0.271 1.271 23 H -0.236 1.236 24 H -0.294 1.294 25 C -0.119 4.119 26 C 0.133 3.867 27 C -0.073 4.073 28 H 0.071 0.929 29 C -0.155 4.155 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.406 0.594 42 H 0.089 0.911 43 H 0.098 0.902 44 H 0.073 0.927 45 H 0.033 0.967 46 H 0.037 0.963 47 H 0.252 0.748 48 H 0.028 0.972 49 H 0.053 0.947 50 H 0.079 0.921 51 H 0.074 0.926 52 H 0.047 0.953 53 H 0.062 0.938 54 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.879 20.624 -19.674 30.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.100 4.100 3 H 0.092 0.908 4 C -0.151 4.151 5 C -0.156 4.156 6 C -0.150 4.150 7 C -0.103 4.103 8 H 0.101 0.899 9 C 0.018 3.982 10 N -0.391 5.391 11 C 0.402 3.598 12 O -0.521 6.521 13 N -0.360 5.360 14 C -0.004 4.004 15 C -0.149 4.149 16 C 0.001 3.999 17 C -0.644 4.644 18 H 0.032 0.968 19 C -0.217 4.217 20 N -0.574 5.574 21 Si 0.901 3.099 22 H -0.197 1.197 23 H -0.159 1.159 24 H -0.220 1.220 25 C -0.158 4.158 26 C 0.009 3.991 27 C -0.092 4.092 28 H 0.089 0.911 29 C -0.213 4.213 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.245 0.755 42 H 0.107 0.893 43 H 0.116 0.884 44 H 0.091 0.909 45 H 0.052 0.948 46 H 0.055 0.945 47 H 0.060 0.940 48 H 0.047 0.953 49 H 0.072 0.928 50 H 0.098 0.902 51 H 0.092 0.908 52 H 0.066 0.934 53 H 0.081 0.919 54 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.054 19.561 -18.464 29.476 hybrid contribution -1.861 1.089 0.005 2.156 sum 10.192 20.651 -18.458 29.513 Atomic orbital electron populations 1.22003 0.95250 1.02113 1.01727 1.21075 0.96004 0.99062 0.93811 0.90815 1.21568 1.00547 0.95548 0.97472 1.21553 1.01169 0.95620 0.97255 1.21586 1.00849 0.98842 0.93759 1.21403 1.01218 0.94887 0.92822 0.89928 1.21379 0.97354 0.80747 0.98742 1.45196 1.51780 1.15719 1.26395 1.16039 0.80106 0.80920 0.82711 1.90842 1.46498 1.76224 1.38582 1.47343 1.49198 1.09605 1.29851 1.21834 0.89452 1.00143 0.89021 1.21754 0.96843 0.97709 0.98607 1.18980 0.93882 0.94067 0.92938 1.22192 0.93218 1.17524 1.31488 0.96764 1.27229 1.04466 0.99017 0.90983 1.70950 1.13853 1.40935 1.31613 0.83601 0.74185 0.75363 0.76719 1.19688 1.15946 1.22019 1.22142 0.95771 0.98758 0.99152 1.21487 0.96187 0.91397 0.89987 1.21039 1.00213 0.92842 0.95151 0.91089 1.21991 1.01592 1.00516 0.97158 0.92247 0.92670 0.92456 0.92049 0.91445 0.91571 0.91422 0.92091 0.91846 0.92755 0.92780 0.75480 0.89325 0.88420 0.90872 0.94773 0.94485 0.93967 0.95314 0.92846 0.90249 0.90796 0.93424 0.91909 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.15 71.98 0.59 -1.04 16 2 C -0.08 -0.85 2.72 -10.79 -0.03 -0.88 16 3 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 4 C -0.11 -1.10 5.45 30.59 0.17 -0.94 16 5 C -0.12 -1.21 5.65 30.60 0.17 -1.04 16 6 C -0.11 -1.40 5.08 30.60 0.16 -1.24 16 7 C -0.08 -1.19 1.48 -10.79 -0.02 -1.21 16 8 H 0.08 1.16 6.43 -2.39 -0.02 1.15 16 9 C 0.14 2.96 4.85 86.38 0.42 3.38 16 10 N -0.73 -17.39 5.19 -478.54 -2.49 -19.87 16 11 C 0.70 23.21 8.30 179.05 1.49 24.69 16 12 O -0.64 -26.37 15.77 -3.98 -0.06 -26.44 16 13 N -0.62 -20.14 2.97 -836.91 -2.49 -22.62 16 14 C 0.12 3.14 6.39 86.37 0.55 3.69 16 15 C -0.11 -3.98 5.30 30.67 0.16 -3.81 16 16 C 0.02 0.90 1.62 -11.51 -0.02 0.88 16 17 C -0.61 -33.80 8.77 25.60 0.22 -33.57 16 18 H 0.01 0.87 7.99 -2.91 -0.02 0.85 16 19 C -0.02 -1.07 5.24 84.66 0.44 -0.63 16 20 N -0.94 -59.12 13.70 21.45 0.29 -58.82 16 21 Si 1.08 48.86 26.45 68.60 1.81 50.67 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 23 H -0.24 -9.18 5.97 99.48 0.59 -8.58 16 24 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 25 C -0.12 -5.11 4.89 30.67 0.15 -4.96 16 26 C 0.13 4.75 6.44 86.36 0.56 5.30 16 27 C -0.07 -0.93 2.02 -10.79 -0.02 -0.95 16 28 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 29 C -0.16 -2.16 8.49 71.98 0.61 -1.55 16 30 H 0.06 0.66 4.81 -2.39 -0.01 0.65 16 31 H 0.05 0.61 6.43 -2.39 -0.02 0.60 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.07 0.68 6.43 -2.39 -0.02 0.67 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.06 0.78 7.18 -2.39 -0.02 0.76 16 39 H 0.05 1.32 6.18 -2.39 -0.01 1.30 16 40 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.41 7.50 5.14 -92.71 -0.48 7.03 16 42 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.10 1.91 5.65 -2.38 -0.01 1.90 16 44 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.04 1.55 6.48 -2.38 -0.02 1.54 16 47 H 0.25 16.15 8.73 -92.71 -0.81 15.34 16 48 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.05 2.35 5.82 -2.39 -0.01 2.34 16 50 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 51 H 0.07 2.78 6.99 -2.39 -0.02 2.77 16 52 H 0.05 0.80 6.32 -2.39 -0.02 0.78 16 53 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 54 H 0.06 0.82 6.43 -2.39 -0.02 0.81 16 Total: -1.00 -71.40 386.09 2.92 -68.48 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: 0.25 Total: 22.49 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: 5.60 Total: -13.88 kcal Atomic # 7 Polarization: -96.64 SS G_CDS: -4.68 Total: -101.32 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.06 Total: -26.44 kcal Atomic # 14 Polarization: 48.86 SS G_CDS: 1.81 Total: 50.67 kcal Total: -71.40 2.92 -68.48 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580269737.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.795 kcal (2) G-P(sol) polarization free energy of solvation -71.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds