Wall clock time and date at job start Tue Mar 31 2020 15:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47827 * 2 1 4 4 C 1.53005 * 109.47226 * 240.00526 * 2 1 3 5 5 C 1.53001 * 109.47557 * 180.02562 * 4 2 1 6 6 C 1.52994 * 109.46914 * 59.99965 * 5 4 2 7 7 C 1.53005 * 109.47344 * 300.00125 * 6 5 4 8 8 H 1.09005 * 109.46658 * 300.00037 * 7 6 5 9 9 C 1.53001 * 109.47239 * 180.02562 * 7 6 5 10 10 N 1.46501 * 109.47022 * 64.99691 * 9 7 6 11 11 C 1.34779 * 119.99789 * 180.27332 * 10 9 7 12 12 O 1.21586 * 120.00241 * 354.80338 * 11 10 9 13 13 N 1.34775 * 119.99624 * 174.79922 * 11 10 9 14 14 C 1.46918 * 120.63657 * 4.94333 * 13 11 10 15 15 C 1.53617 * 108.54834 * 126.36594 * 14 13 11 16 16 C 1.53039 * 109.24327 * 54.85488 * 15 14 13 17 17 C 1.50700 * 109.45993 * 178.49091 * 16 15 14 18 18 H 1.07997 * 119.99854 * 120.07231 * 17 16 15 19 19 C 1.37873 * 120.00372 * 300.06742 * 17 16 15 20 20 N 1.31523 * 119.99902 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00423 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46877 * 60.00076 * 21 19 17 23 23 H 1.48501 * 109.47430 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47202 * 300.00408 * 21 19 17 25 25 C 1.53035 * 109.54076 * 298.51557 * 16 15 14 26 26 C 1.46933 * 120.62967 * 185.21607 * 13 11 10 27 27 C 1.53001 * 109.47217 * 60.00061 * 7 6 5 28 28 H 1.08997 * 109.46929 * 180.02562 * 27 7 6 29 29 C 1.52996 * 109.46996 * 60.00019 * 27 7 6 30 30 H 1.08998 * 109.47012 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46598 * 299.99505 * 1 2 3 32 32 H 1.08998 * 109.46856 * 59.99380 * 1 2 3 33 33 H 1.08999 * 109.46813 * 59.99548 * 4 2 1 34 34 H 1.09005 * 109.46625 * 300.00394 * 4 2 1 35 35 H 1.08998 * 109.46697 * 299.99915 * 5 4 2 36 36 H 1.08997 * 109.46929 * 179.97438 * 5 4 2 37 37 H 1.09004 * 109.46977 * 180.02562 * 6 5 4 38 38 H 1.09005 * 109.47717 * 60.00081 * 6 5 4 39 39 H 1.08997 * 109.47053 * 305.00062 * 9 7 6 40 40 H 1.09003 * 109.47189 * 184.99732 * 9 7 6 41 41 H 0.97004 * 120.00180 * 0.02562 * 10 9 7 42 42 H 1.09003 * 109.58717 * 246.20331 * 14 13 11 43 43 H 1.09007 * 109.58382 * 6.61854 * 14 13 11 44 44 H 1.09008 * 109.63558 * 294.86203 * 15 14 13 45 45 H 1.09003 * 109.46206 * 174.74729 * 15 14 13 46 46 H 1.09003 * 109.44531 * 58.53001 * 16 15 14 47 47 H 0.96997 * 119.99785 * 179.97438 * 20 19 17 48 48 H 1.09007 * 109.49490 * 301.41468 * 25 16 15 49 49 H 1.08997 * 109.52740 * 181.33024 * 25 16 15 50 50 H 1.09009 * 109.58462 * 353.37779 * 26 13 11 51 51 H 1.08995 * 109.58710 * 113.65383 * 26 13 11 52 52 H 1.09005 * 109.47367 * 59.99806 * 29 27 7 53 53 H 1.08995 * 109.47311 * 179.97438 * 29 27 7 54 54 H 1.09005 * 109.47649 * 300.00450 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2491 6 6 4.0795 -1.4435 0.0000 7 6 3.5695 -0.7223 1.2494 8 1 3.9333 0.3052 1.2497 9 6 4.0795 -1.4438 2.4986 10 7 5.5396 -1.3405 2.5602 11 6 6.2131 -1.9105 3.5791 12 8 5.6048 -2.4284 4.4956 13 7 7.5608 -1.9065 3.5818 14 6 8.3095 -1.1922 2.5389 15 6 9.2973 -0.2313 3.2177 16 6 10.1751 -1.0174 4.1943 17 6 11.1709 -0.0858 4.8358 18 1 11.1771 0.0427 5.9081 19 6 12.0742 0.6024 4.0539 20 7 12.0664 0.4463 2.7480 21 14 13.3090 1.7567 4.8491 22 1 14.1620 0.9933 5.7951 23 1 14.1606 2.3705 3.7988 24 1 12.5857 2.8242 5.5857 25 6 9.2972 -1.6493 5.2769 26 6 8.3094 -2.6215 4.6245 27 6 2.0395 -0.7217 1.2492 28 1 1.6763 -0.2076 2.1390 29 6 1.5290 -2.1640 1.2487 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.6766 -0.2073 -2.1392 34 1 1.6766 -1.7488 -1.2494 35 1 3.9337 0.3058 -1.2488 36 1 3.9333 -1.2359 -2.1389 37 1 5.1695 -1.4435 0.0004 38 1 3.7158 -2.4711 -0.0002 39 1 3.7912 -2.4940 2.4548 40 1 3.6450 -0.9843 3.3864 41 1 6.0220 -0.8649 1.8658 42 1 8.8556 -1.9087 1.9253 43 1 7.6175 -0.6264 1.9149 44 1 8.7466 0.5368 3.7609 45 1 9.9255 0.2383 2.4608 46 1 10.7066 -1.8011 3.6544 47 1 12.7016 0.9308 2.1979 48 1 8.7464 -0.8679 5.8006 49 1 9.9249 -2.1895 5.9856 50 1 7.6173 -2.9993 5.3772 51 1 8.8535 -3.4538 4.1781 52 1 1.8920 -2.6783 2.1386 53 1 0.4391 -2.1636 1.2490 54 1 1.8923 -2.6779 0.3587 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580269738.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:48 Heat of formation + Delta-G solvation = -78.789007 kcal Electronic energy + Delta-G solvation = -28659.653978 eV Core-core repulsion = 25015.101936 eV Total energy + Delta-G solvation = -3644.552041 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.51032 -40.54692 -38.50996 -36.16479 -35.31832 -33.58735 -33.25829 -32.41784 -31.56808 -28.92172 -27.92994 -26.88331 -26.03702 -24.58648 -23.86245 -22.79492 -21.83996 -21.42658 -20.42481 -19.28854 -18.97345 -18.24046 -17.41615 -16.68817 -16.59098 -16.39622 -16.14373 -15.31902 -15.27300 -15.17689 -14.89289 -14.80993 -14.60621 -14.35309 -14.20876 -14.06615 -13.53577 -13.48662 -13.30599 -13.20665 -13.11168 -12.79493 -12.70947 -12.58236 -12.47027 -12.36145 -12.13572 -12.07945 -11.97638 -11.77817 -11.50270 -11.47995 -11.24890 -11.04431 -10.99295 -10.88568 -10.77341 -10.74084 -10.39081 -10.14968 -9.36285 -8.07100 -6.20051 1.42903 1.43409 1.50751 1.74448 2.15574 2.44637 2.96122 3.19156 3.62919 3.73433 3.79635 4.10635 4.15479 4.20192 4.25683 4.32699 4.36515 4.44432 4.46614 4.47344 4.52065 4.58753 4.59169 4.69023 4.73971 4.78366 4.81789 4.89001 4.89227 4.96373 4.99865 5.06777 5.09798 5.14299 5.21073 5.21766 5.23822 5.27465 5.30504 5.39252 5.43838 5.46548 5.47846 5.51781 5.55660 5.61354 5.66780 5.74789 5.99562 6.07290 6.14000 6.40594 6.88730 6.99216 7.47274 7.57621 8.95994 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.019873 B = 0.002574 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.628634 B =10876.330896 C =11670.986146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 H 0.067 0.933 4 C -0.114 4.114 5 C -0.117 4.117 6 C -0.115 4.115 7 C -0.085 4.085 8 H 0.077 0.923 9 C 0.145 3.855 10 N -0.736 5.736 11 C 0.701 3.299 12 O -0.638 6.638 13 N -0.623 5.623 14 C 0.122 3.878 15 C -0.113 4.113 16 C 0.046 3.954 17 C -0.536 4.536 18 H 0.046 0.954 19 C 0.018 3.982 20 N -0.911 5.911 21 Si 0.948 3.052 22 H -0.274 1.274 23 H -0.282 1.282 24 H -0.276 1.276 25 C -0.114 4.114 26 C 0.135 3.865 27 C -0.074 4.074 28 H 0.068 0.932 29 C -0.155 4.155 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.049 0.951 41 H 0.405 0.595 42 H 0.068 0.932 43 H 0.087 0.913 44 H 0.024 0.976 45 H 0.081 0.919 46 H 0.005 0.995 47 H 0.262 0.738 48 H 0.038 0.962 49 H 0.064 0.936 50 H 0.078 0.922 51 H 0.070 0.930 52 H 0.046 0.954 53 H 0.065 0.935 54 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.231 -2.213 -10.843 23.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.102 4.102 3 H 0.085 0.915 4 C -0.151 4.151 5 C -0.155 4.155 6 C -0.153 4.153 7 C -0.103 4.103 8 H 0.095 0.905 9 C 0.021 3.979 10 N -0.394 5.394 11 C 0.402 3.598 12 O -0.521 6.521 13 N -0.359 5.359 14 C 0.000 4.000 15 C -0.152 4.152 16 C 0.028 3.972 17 C -0.574 4.574 18 H 0.064 0.936 19 C -0.181 4.181 20 N -0.550 5.550 21 Si 0.774 3.226 22 H -0.200 1.200 23 H -0.207 1.207 24 H -0.202 1.202 25 C -0.152 4.152 26 C 0.012 3.988 27 C -0.093 4.093 28 H 0.087 0.913 29 C -0.212 4.212 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.243 0.757 42 H 0.087 0.913 43 H 0.105 0.895 44 H 0.043 0.957 45 H 0.099 0.901 46 H 0.024 0.976 47 H 0.071 0.929 48 H 0.057 0.943 49 H 0.083 0.917 50 H 0.096 0.904 51 H 0.088 0.912 52 H 0.065 0.935 53 H 0.084 0.916 54 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -21.581 -2.535 -10.371 24.077 hybrid contribution 1.343 0.959 0.375 1.692 sum -20.238 -1.576 -9.995 22.627 Atomic orbital electron populations 1.21871 0.94649 1.02207 1.01765 1.21097 0.95891 0.99043 0.94134 0.91504 1.21625 0.95065 1.01033 0.97365 1.21509 0.96023 1.00666 0.97263 1.21622 1.00069 0.99716 0.93857 1.21352 0.96391 0.99614 0.92990 0.90461 1.21334 0.77653 1.00645 0.98229 1.45268 1.08141 1.59316 1.26690 1.16029 0.81657 0.79349 0.82717 1.90820 1.68338 1.54514 1.38452 1.47406 1.03479 1.54763 1.30239 1.21837 0.94282 0.94809 0.89115 1.21852 0.96057 0.97079 1.00204 1.18592 0.92136 0.93956 0.92539 1.21520 1.16637 1.26025 0.93181 0.93582 1.25618 0.98870 0.98141 0.95430 1.69933 1.37336 1.43246 1.04496 0.85778 0.79266 0.79338 0.78235 1.19985 1.20733 1.20188 1.21866 0.96872 0.97779 0.98685 1.21451 0.93490 0.93886 0.89947 1.21028 0.92676 0.97096 0.98496 0.91332 1.22047 1.01483 0.95758 1.01877 0.92070 0.92818 0.92334 0.91574 0.91500 0.92025 0.91538 0.92430 0.91518 0.92162 0.93226 0.75682 0.91345 0.89458 0.95720 0.90115 0.97640 0.92899 0.94333 0.91714 0.90357 0.91167 0.93482 0.91615 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.84 71.98 0.64 -0.93 16 2 C -0.08 -1.01 2.50 -10.79 -0.03 -1.04 16 3 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 4 C -0.11 -1.31 4.93 30.60 0.15 -1.16 16 5 C -0.12 -1.52 5.92 30.59 0.18 -1.34 16 6 C -0.12 -1.77 4.80 30.59 0.15 -1.62 16 7 C -0.08 -1.41 2.00 -10.79 -0.02 -1.43 16 8 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 9 C 0.15 3.37 4.57 86.38 0.39 3.76 16 10 N -0.74 -20.09 5.19 -478.53 -2.48 -22.57 16 11 C 0.70 25.24 8.29 179.05 1.49 26.73 16 12 O -0.64 -27.26 15.77 -3.99 -0.06 -27.32 16 13 N -0.62 -22.52 2.97 -836.07 -2.48 -25.00 16 14 C 0.12 4.21 6.42 86.51 0.56 4.76 16 15 C -0.11 -5.00 5.17 30.81 0.16 -4.84 16 16 C 0.05 2.24 2.06 -11.52 -0.02 2.21 16 17 C -0.54 -29.02 8.56 25.60 0.22 -28.80 16 18 H 0.05 2.50 7.74 -2.91 -0.02 2.48 16 19 C 0.02 0.99 5.30 84.65 0.45 1.44 16 20 N -0.91 -49.97 11.30 21.45 0.24 -49.72 16 21 Si 0.95 42.85 29.54 68.60 2.03 44.88 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 24 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 25 C -0.11 -4.78 5.30 30.67 0.16 -4.62 16 26 C 0.14 5.04 6.44 86.36 0.56 5.60 16 27 C -0.07 -1.06 2.25 -10.79 -0.02 -1.08 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 29 C -0.15 -2.16 7.79 71.98 0.56 -1.60 16 30 H 0.06 0.62 6.43 -2.39 -0.02 0.60 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.07 0.77 6.43 -2.38 -0.02 0.75 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.06 0.95 7.18 -2.39 -0.02 0.93 16 38 H 0.07 1.05 6.43 -2.38 -0.02 1.04 16 39 H 0.06 1.48 6.71 -2.39 -0.02 1.46 16 40 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.40 9.49 5.14 -92.71 -0.48 9.02 16 42 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.09 2.44 5.64 -2.38 -0.01 2.43 16 44 H 0.02 1.12 8.14 -2.38 -0.02 1.10 16 45 H 0.08 3.96 6.03 -2.39 -0.01 3.95 16 46 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 47 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 48 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 49 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 50 H 0.08 2.95 7.00 -2.38 -0.02 2.93 16 51 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 52 H 0.05 0.77 6.55 -2.38 -0.02 0.76 16 53 H 0.06 0.80 6.43 -2.39 -0.02 0.78 16 54 H 0.06 0.87 4.81 -2.38 -0.01 0.86 16 Total: -1.00 -62.67 390.18 3.19 -59.48 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: 0.39 Total: 24.22 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: 5.56 Total: -3.96 kcal Atomic # 7 Polarization: -92.58 SS G_CDS: -4.72 Total: -97.30 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.06 Total: -27.32 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -62.67 3.19 -59.48 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580269738.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.310 kcal (2) G-P(sol) polarization free energy of solvation -62.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds