Wall clock time and date at job start Tue Mar 31 2020 15:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46768 * 2 1 4 4 C 1.52999 * 109.47136 * 240.00235 * 2 1 3 5 5 C 1.53008 * 109.46858 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.46649 * 60.00085 * 5 4 2 7 7 C 1.52999 * 109.47421 * 299.99570 * 6 5 4 8 8 H 1.09002 * 109.47100 * 300.00858 * 7 6 5 9 9 C 1.53000 * 109.47120 * 180.02562 * 7 6 5 10 10 N 1.46497 * 109.47332 * 65.00459 * 9 7 6 11 11 C 1.34777 * 120.00049 * 180.02562 * 10 9 7 12 12 O 1.21588 * 119.99915 * 3.66012 * 11 10 9 13 13 N 1.34771 * 119.99801 * 183.65884 * 11 10 9 14 14 C 1.46937 * 120.62759 * 175.49759 * 13 11 10 15 15 C 1.53195 * 108.77245 * 233.63134 * 14 13 11 16 16 C 1.53040 * 109.31296 * 305.36579 * 15 14 13 17 17 C 1.50703 * 109.45561 * 181.38858 * 16 15 14 18 18 H 1.07996 * 120.00078 * 354.32345 * 17 16 15 19 19 C 1.37878 * 119.99642 * 174.32691 * 17 16 15 20 20 N 1.31510 * 120.00127 * 156.04587 * 19 17 16 21 21 Si 1.86800 * 120.00102 * 336.04025 * 19 17 16 22 22 H 1.48502 * 109.47372 * 180.02562 * 21 19 17 23 23 H 1.48501 * 109.47147 * 300.00352 * 21 19 17 24 24 H 1.48496 * 109.47177 * 60.00187 * 21 19 17 25 25 C 1.53039 * 109.53912 * 61.36828 * 16 15 14 26 26 C 1.46923 * 120.63753 * 355.52282 * 13 11 10 27 27 C 1.52993 * 109.47076 * 119.99931 * 2 1 3 28 28 H 1.09002 * 109.47265 * 60.00374 * 27 2 1 29 29 C 1.52999 * 109.47387 * 300.00150 * 27 2 1 30 30 H 1.08994 * 109.47072 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47555 * 300.00012 * 1 2 3 32 32 H 1.09004 * 109.47002 * 60.00206 * 1 2 3 33 33 H 1.09001 * 109.47300 * 60.00363 * 4 2 1 34 34 H 1.09002 * 109.47100 * 299.99562 * 4 2 1 35 35 H 1.09002 * 109.47020 * 299.99749 * 5 4 2 36 36 H 1.08996 * 109.46555 * 179.97438 * 5 4 2 37 37 H 1.09011 * 109.46729 * 179.97438 * 6 5 4 38 38 H 1.09002 * 109.47684 * 60.00071 * 6 5 4 39 39 H 1.09000 * 109.46979 * 304.99572 * 9 7 6 40 40 H 1.08999 * 109.46793 * 184.99979 * 9 7 6 41 41 H 0.97004 * 119.99819 * 359.97438 * 10 9 7 42 42 H 1.08997 * 109.58430 * 113.84574 * 14 13 11 43 43 H 1.08993 * 109.58515 * 353.41834 * 14 13 11 44 44 H 1.09009 * 109.49312 * 185.41364 * 15 14 13 45 45 H 1.08999 * 109.52269 * 65.33806 * 15 14 13 46 46 H 1.08997 * 109.45907 * 301.35355 * 16 15 14 47 47 H 0.97006 * 120.00048 * 354.95548 * 20 19 17 48 48 H 1.08995 * 109.49800 * 58.58397 * 25 16 15 49 49 H 1.08997 * 109.49425 * 178.67814 * 25 16 15 50 50 H 1.08998 * 109.59052 * 246.16034 * 26 13 11 51 51 H 1.09002 * 109.58055 * 6.57753 * 26 13 11 52 52 H 1.08998 * 109.47580 * 300.00234 * 29 27 2 53 53 H 1.09005 * 109.47227 * 59.99745 * 29 27 2 54 54 H 1.09001 * 109.47300 * 179.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5701 -0.7206 -1.2495 6 6 4.0805 -1.4415 -0.0003 7 6 3.5705 -0.7203 1.2490 8 1 3.9334 0.3075 1.2488 9 6 4.0814 -1.4410 2.4982 10 7 5.5414 -1.3366 2.5594 11 6 6.2151 -1.9015 3.5809 12 8 5.6186 -2.5541 4.4155 13 7 7.5500 -1.7430 3.6771 14 6 8.2847 -2.2687 4.8360 15 6 9.1061 -1.1335 5.4553 16 6 9.9952 -0.5067 4.3789 17 6 10.8298 0.5881 4.9923 18 1 10.6709 0.8763 6.0209 19 6 11.7961 1.2218 4.2401 20 7 12.1899 2.4345 4.5623 21 14 12.5460 0.3577 2.7635 22 1 13.5537 1.2454 2.1296 23 1 13.2024 -0.8988 3.2059 24 1 11.4786 0.0394 1.7815 25 6 9.1195 0.0804 3.2697 26 6 8.2984 -1.0409 2.6256 27 6 2.0400 -0.7212 1.2492 28 1 1.6767 -1.7489 1.2492 29 6 1.5300 0.0000 2.4985 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6768 -0.2073 -2.1393 34 1 1.6767 -1.7489 -1.2493 35 1 3.9330 0.3072 -1.2497 36 1 3.9334 -1.2348 -2.1393 37 1 5.1706 -1.4415 -0.0007 38 1 3.7176 -2.4694 -0.0001 39 1 3.7936 -2.4914 2.4549 40 1 3.6468 -0.9815 3.3859 41 1 6.0232 -0.8615 1.8644 42 1 8.9514 -3.0685 4.5137 43 1 7.5789 -2.6529 5.5723 44 1 9.7295 -1.5308 6.2564 45 1 8.4342 -0.3760 5.8588 46 1 10.6499 -1.2702 3.9589 47 1 11.7501 2.9117 5.2833 48 1 8.4472 0.8264 3.6933 49 1 9.7526 0.5473 2.5152 50 1 8.9662 -1.7406 2.1231 51 1 7.6016 -0.6152 1.9036 52 1 1.8932 1.0277 2.4985 53 1 0.4399 0.0000 2.4985 54 1 1.8930 -0.5141 3.3884 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580269739.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:52 Heat of formation + Delta-G solvation = -85.221437 kcal Electronic energy + Delta-G solvation = -28704.087013 eV Core-core repulsion = 25059.256040 eV Total energy + Delta-G solvation = -3644.830972 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.53565 -40.35441 -38.63882 -36.17765 -35.38203 -33.91309 -33.64237 -32.73614 -31.79909 -28.78945 -27.85796 -26.87937 -25.83153 -24.14908 -24.07527 -21.99779 -21.81119 -21.42979 -20.75674 -20.24132 -19.67292 -18.98952 -17.39475 -16.70837 -16.13313 -15.77901 -15.70096 -15.58992 -15.46837 -15.27950 -15.15599 -15.03991 -14.74090 -14.48748 -14.30428 -14.18832 -13.91514 -13.54612 -13.31599 -13.18926 -12.83082 -12.70920 -12.64065 -12.49355 -12.46617 -12.31264 -12.22244 -12.09658 -11.83707 -11.74567 -11.68320 -11.52422 -11.32618 -11.27115 -11.16796 -10.87941 -10.79692 -10.77102 -10.36342 -10.17438 -9.43898 -8.69620 -6.30416 1.50025 1.58685 1.67497 1.78367 2.13835 2.55289 2.90916 3.04971 3.59880 3.72633 3.78242 4.00537 4.05454 4.08227 4.18828 4.24897 4.27604 4.33465 4.44088 4.46560 4.47267 4.54699 4.57065 4.61261 4.66215 4.77323 4.79347 4.81282 4.82065 4.86894 4.93781 4.97568 5.02331 5.08052 5.10313 5.13614 5.15121 5.20446 5.23656 5.32993 5.35170 5.40140 5.42566 5.45530 5.50952 5.58321 5.61390 5.68734 5.76665 6.00244 6.04990 6.17570 6.60851 6.95401 7.44844 7.53973 8.63556 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.017282 B = 0.002810 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.813138 B = 9960.752099 C =10622.493843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 H 0.067 0.933 4 C -0.113 4.113 5 C -0.117 4.117 6 C -0.113 4.113 7 C -0.084 4.084 8 H 0.077 0.923 9 C 0.143 3.857 10 N -0.735 5.735 11 C 0.702 3.298 12 O -0.637 6.637 13 N -0.624 5.624 14 C 0.136 3.864 15 C -0.108 4.108 16 C 0.021 3.979 17 C -0.612 4.612 18 H 0.008 0.992 19 C -0.016 4.016 20 N -0.935 5.935 21 Si 1.080 2.920 22 H -0.295 1.295 23 H -0.268 1.268 24 H -0.232 1.232 25 C -0.125 4.125 26 C 0.115 3.885 27 C -0.072 4.072 28 H 0.072 0.928 29 C -0.155 4.155 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.406 0.594 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.062 0.938 45 H 0.030 0.970 46 H 0.034 0.966 47 H 0.251 0.749 48 H 0.035 0.965 49 H 0.065 0.935 50 H 0.086 0.914 51 H 0.095 0.905 52 H 0.053 0.947 53 H 0.067 0.933 54 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.006 -8.093 -15.800 28.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.101 4.101 3 H 0.085 0.915 4 C -0.150 4.150 5 C -0.155 4.155 6 C -0.150 4.150 7 C -0.103 4.103 8 H 0.096 0.904 9 C 0.019 3.981 10 N -0.393 5.393 11 C 0.403 3.597 12 O -0.520 6.520 13 N -0.360 5.360 14 C 0.013 3.987 15 C -0.146 4.146 16 C 0.002 3.998 17 C -0.649 4.649 18 H 0.027 0.973 19 C -0.214 4.214 20 N -0.570 5.570 21 Si 0.901 3.099 22 H -0.222 1.222 23 H -0.193 1.193 24 H -0.156 1.156 25 C -0.164 4.164 26 C -0.008 4.008 27 C -0.091 4.091 28 H 0.090 0.910 29 C -0.212 4.212 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.244 0.756 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.081 0.919 45 H 0.049 0.951 46 H 0.052 0.948 47 H 0.059 0.941 48 H 0.054 0.946 49 H 0.083 0.917 50 H 0.104 0.896 51 H 0.113 0.887 52 H 0.072 0.928 53 H 0.086 0.914 54 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -21.319 -8.389 -16.363 28.154 hybrid contribution -0.553 0.793 1.987 2.209 sum -21.872 -7.597 -14.376 27.254 Atomic orbital electron populations 1.21877 0.94708 1.01971 1.01987 1.21117 0.95864 0.99275 0.93869 0.91459 1.21597 0.95257 1.00724 0.97454 1.21520 0.95859 1.00756 0.97363 1.21587 1.00345 0.99367 0.93750 1.21383 0.96246 0.99728 0.92972 0.90429 1.21364 0.77728 1.00394 0.98625 1.45247 1.08098 1.59357 1.26616 1.16013 0.81510 0.79909 0.82236 1.90837 1.68576 1.47603 1.44958 1.47350 1.04999 1.59613 1.24057 1.21480 0.94477 0.95510 0.87253 1.21746 0.97426 0.96760 0.98695 1.18914 0.93206 0.94441 0.93206 1.22166 1.22648 1.22089 0.98006 0.97320 1.27287 0.95312 0.94462 1.04378 1.70984 1.45141 1.11290 1.29595 0.83627 0.77228 0.75218 0.73876 1.22155 1.19278 1.15560 1.22176 0.98212 0.97119 0.98853 1.21854 0.95459 0.94450 0.89025 1.21062 0.92790 1.00124 0.95131 0.90985 1.21994 1.01718 1.00361 0.97157 0.92634 0.92310 0.92323 0.91445 0.91972 0.91906 0.91375 0.91957 0.91938 0.92594 0.92700 0.75554 0.90095 0.90498 0.91916 0.95136 0.94804 0.94068 0.94573 0.91651 0.89583 0.88687 0.92805 0.91395 0.93323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.84 71.98 0.64 -0.87 16 2 C -0.08 -0.95 2.25 -10.80 -0.02 -0.98 16 3 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 4 C -0.11 -1.21 5.20 30.60 0.16 -1.05 16 5 C -0.12 -1.34 5.92 30.60 0.18 -1.16 16 6 C -0.11 -1.53 5.08 30.59 0.16 -1.37 16 7 C -0.08 -1.29 1.75 -10.78 -0.02 -1.31 16 8 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 9 C 0.14 3.09 4.85 86.38 0.42 3.50 16 10 N -0.73 -18.16 5.20 -478.55 -2.49 -20.65 16 11 C 0.70 23.26 8.30 179.06 1.49 24.75 16 12 O -0.64 -25.75 15.78 -3.99 -0.06 -25.81 16 13 N -0.62 -20.18 2.97 -836.91 -2.49 -22.67 16 14 C 0.14 4.63 6.42 86.36 0.55 5.18 16 15 C -0.11 -4.35 5.30 30.67 0.16 -4.18 16 16 C 0.02 0.94 1.66 -11.51 -0.02 0.93 16 17 C -0.61 -34.17 8.76 25.60 0.22 -33.94 16 18 H 0.01 0.53 7.99 -2.91 -0.02 0.51 16 19 C -0.02 -0.90 5.23 84.66 0.44 -0.46 16 20 N -0.94 -57.95 13.69 21.45 0.29 -57.66 16 21 Si 1.08 46.96 26.51 68.60 1.82 48.78 16 22 H -0.30 -13.22 7.11 99.48 0.71 -12.51 16 23 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 24 H -0.23 -8.36 6.06 99.48 0.60 -7.76 16 25 C -0.12 -4.78 5.09 30.67 0.16 -4.62 16 26 C 0.11 3.27 6.43 86.36 0.56 3.82 16 27 C -0.07 -0.98 1.78 -10.78 -0.02 -0.99 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 C -0.16 -2.26 8.49 71.98 0.61 -1.65 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.60 6.43 -2.39 -0.02 0.58 16 32 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 35 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 36 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.06 0.85 7.18 -2.38 -0.02 0.84 16 38 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.05 1.35 6.18 -2.39 -0.01 1.33 16 41 H 0.41 8.17 5.11 -92.71 -0.47 7.70 16 42 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.08 2.73 7.03 -2.39 -0.02 2.71 16 44 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 45 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.03 1.43 6.71 -2.39 -0.02 1.41 16 47 H 0.25 15.92 8.73 -92.70 -0.81 15.11 16 48 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.07 2.53 5.49 -2.39 -0.01 2.52 16 50 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 51 H 0.10 2.08 5.56 -2.39 -0.01 2.07 16 52 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 53 H 0.07 0.85 6.43 -2.38 -0.02 0.83 16 54 H 0.05 0.83 6.33 -2.39 -0.02 0.81 16 Total: -1.00 -69.92 393.37 2.98 -66.94 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: 0.24 Total: 25.48 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: 5.66 Total: -14.41 kcal Atomic # 7 Polarization: -96.29 SS G_CDS: -4.68 Total: -100.98 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.06 Total: -25.81 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 1.82 Total: 48.78 kcal Total: -69.92 2.98 -66.94 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580269739.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.284 kcal (2) G-P(sol) polarization free energy of solvation -69.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds