Wall clock time and date at job start Tue Mar 31 2020 15:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47651 * 2 1 4 4 C 1.53008 * 109.47019 * 240.00081 * 2 1 3 5 5 C 1.52996 * 109.47229 * 300.00235 * 4 2 1 6 6 C 1.52999 * 109.47050 * 299.99614 * 5 4 2 7 7 C 1.53005 * 109.46966 * 60.00444 * 6 5 4 8 8 H 1.08998 * 109.47306 * 59.99407 * 7 6 5 9 9 C 1.52999 * 109.46966 * 179.97438 * 7 6 5 10 10 N 1.46496 * 109.47210 * 294.99515 * 9 7 6 11 11 C 1.34774 * 120.00237 * 179.97438 * 10 9 7 12 12 O 1.21591 * 119.99813 * 354.91098 * 11 10 9 13 13 N 1.34777 * 120.00469 * 174.90440 * 11 10 9 14 14 C 1.46928 * 120.62652 * 4.75622 * 13 11 10 15 15 C 1.52764 * 109.00565 * 233.58287 * 14 13 11 16 16 C 1.53039 * 109.38249 * 305.58611 * 15 14 13 17 17 C 1.50702 * 109.44789 * 181.25721 * 16 15 14 18 18 H 1.08003 * 119.99982 * 245.37661 * 17 16 15 19 19 C 1.37876 * 120.00233 * 65.38032 * 17 16 15 20 20 N 1.31512 * 119.99755 * 355.13813 * 19 17 16 21 21 Si 1.86801 * 119.99932 * 175.14195 * 19 17 16 22 22 H 1.48497 * 109.47059 * 94.99815 * 21 19 17 23 23 H 1.48499 * 109.46975 * 214.99231 * 21 19 17 24 24 H 1.48492 * 109.46910 * 334.99793 * 21 19 17 25 25 C 1.53034 * 109.53928 * 61.23950 * 16 15 14 26 26 C 1.46927 * 120.63552 * 185.03131 * 13 11 10 27 27 C 1.52999 * 109.47333 * 120.00422 * 2 1 3 28 28 H 1.08995 * 109.46948 * 299.99910 * 27 2 1 29 29 C 1.53003 * 109.47081 * 179.97438 * 27 2 1 30 30 H 1.09008 * 109.47657 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46882 * 299.99448 * 1 2 3 32 32 H 1.08995 * 109.47526 * 59.99599 * 1 2 3 33 33 H 1.09002 * 109.47346 * 179.97438 * 4 2 1 34 34 H 1.09007 * 109.46783 * 60.00278 * 4 2 1 35 35 H 1.08995 * 109.47059 * 179.97438 * 5 4 2 36 36 H 1.09002 * 109.47429 * 59.99472 * 5 4 2 37 37 H 1.08998 * 109.47097 * 179.97438 * 6 5 4 38 38 H 1.08998 * 109.47592 * 300.00026 * 6 5 4 39 39 H 1.09002 * 109.47183 * 54.99951 * 9 7 6 40 40 H 1.09000 * 109.46987 * 174.99249 * 9 7 6 41 41 H 0.96996 * 119.99868 * 0.02562 * 10 9 7 42 42 H 1.08999 * 109.58829 * 353.41017 * 14 13 11 43 43 H 1.08995 * 109.59034 * 113.83945 * 14 13 11 44 44 H 1.09005 * 109.56034 * 185.55126 * 15 14 13 45 45 H 1.08995 * 109.36181 * 65.50089 * 15 14 13 46 46 H 1.09000 * 109.46086 * 301.22125 * 16 15 14 47 47 H 0.97003 * 119.99699 * 180.02562 * 20 19 17 48 48 H 1.09001 * 109.49984 * 178.67862 * 25 16 15 49 49 H 1.09006 * 109.51917 * 58.60283 * 25 16 15 50 50 H 1.09003 * 109.58697 * 246.15919 * 26 13 11 51 51 H 1.08996 * 109.58402 * 6.58451 * 26 13 11 52 52 H 1.08998 * 109.46981 * 60.00364 * 29 27 2 53 53 H 1.09007 * 109.46865 * 180.02562 * 29 27 2 54 54 H 1.08998 * 109.47166 * 299.99486 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5299 -2.1637 -1.2494 6 6 2.0400 -2.8850 -0.0002 7 6 1.5299 -2.1639 1.2491 8 1 0.4399 -2.1638 1.2491 9 6 2.0394 -2.8856 2.4983 10 7 1.4548 -4.2274 2.5596 11 6 1.7632 -5.0508 3.5810 12 8 2.5964 -4.7165 4.4011 13 7 1.1480 -6.2447 3.6936 14 6 0.2164 -6.7075 2.6559 15 6 -1.1125 -7.0801 3.3108 16 6 -0.8611 -8.0950 4.4283 17 6 -2.1745 -8.4869 5.0549 18 1 -2.3799 -8.2302 6.0837 19 6 -3.1138 -9.1732 4.3149 20 7 -2.9048 -9.4022 3.0369 21 14 -4.6834 -9.7777 5.1277 22 1 -5.7646 -8.7816 4.9183 23 1 -5.0834 -11.0758 4.5275 24 1 -4.4499 -9.9563 6.5832 25 6 0.0453 -7.4712 5.4919 26 6 1.3916 -7.1055 4.8592 27 6 2.0400 -0.7213 1.2492 28 1 1.6767 -0.2076 2.1391 29 6 3.5700 -0.7219 1.2488 30 1 -0.3635 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 3.1300 -0.7209 -1.2496 34 1 1.6766 -0.2073 -2.1393 35 1 1.8928 -2.6774 -2.1396 36 1 0.4399 -2.1637 -1.2493 37 1 1.6762 -3.9125 0.0000 38 1 3.1299 -2.8851 -0.0002 39 1 3.1258 -2.9641 2.4548 40 1 1.7512 -2.3227 3.3860 41 1 0.8463 -4.5235 1.8647 42 1 0.0536 -5.9113 1.9296 43 1 0.6320 -7.5822 2.1556 44 1 -1.7769 -7.5170 2.5652 45 1 -1.5728 -6.1850 3.7290 46 1 -0.3784 -8.9799 4.0134 47 1 -3.5659 -9.8847 2.5161 48 1 0.2048 -8.1863 6.2989 49 1 -0.4257 -6.5724 5.8901 50 1 1.9049 -8.0133 4.5421 51 1 2.0040 -6.5718 5.5859 52 1 3.9337 0.3057 1.2487 53 1 3.9334 -1.2362 2.1386 54 1 3.9329 -1.2359 0.3588 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580269740.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:56 Heat of formation + Delta-G solvation = -76.961035 kcal Electronic energy + Delta-G solvation = -28862.436417 eV Core-core repulsion = 25217.963642 eV Total energy + Delta-G solvation = -3644.472774 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.55103 -40.67325 -38.52848 -36.11598 -35.29715 -33.44232 -32.91222 -32.42158 -31.63694 -29.70158 -28.06955 -26.76875 -25.29349 -24.56081 -23.85007 -23.16355 -21.96914 -21.63902 -20.41060 -19.19741 -18.63260 -18.27503 -17.34792 -16.77683 -16.63857 -16.46513 -15.99319 -15.61447 -15.22066 -15.08069 -14.90903 -14.70900 -14.55909 -14.32493 -14.25827 -13.91103 -13.86913 -13.54268 -13.21068 -13.18415 -13.09742 -12.80860 -12.70641 -12.47582 -12.46355 -12.35536 -12.15338 -12.13070 -11.97665 -11.80744 -11.67858 -11.46622 -11.22493 -11.00845 -10.92167 -10.79774 -10.77831 -10.70931 -10.39517 -10.14073 -9.36547 -8.08105 -6.19633 1.41110 1.43932 1.53208 1.73251 2.17118 2.44962 2.95386 3.19494 3.65164 3.73698 3.77653 4.10503 4.18428 4.20419 4.27994 4.30202 4.36240 4.43791 4.46499 4.48096 4.50856 4.59280 4.63403 4.68468 4.70919 4.76294 4.84955 4.89209 4.90024 4.98869 5.00127 5.06014 5.08499 5.12997 5.19104 5.21476 5.24303 5.28645 5.30603 5.42311 5.43676 5.45283 5.50299 5.51140 5.56887 5.61058 5.66617 5.74879 5.99183 6.06968 6.12264 6.40535 6.89835 6.99230 7.47688 7.57550 8.96302 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.017250 B = 0.002772 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.797782 B =10097.638717 C =11023.493274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.081 4.081 3 H 0.076 0.924 4 C -0.114 4.114 5 C -0.119 4.119 6 C -0.115 4.115 7 C -0.086 4.086 8 H 0.080 0.920 9 C 0.144 3.856 10 N -0.736 5.736 11 C 0.702 3.298 12 O -0.638 6.638 13 N -0.622 5.622 14 C 0.122 3.878 15 C -0.111 4.111 16 C 0.047 3.953 17 C -0.534 4.534 18 H 0.046 0.954 19 C 0.019 3.981 20 N -0.911 5.911 21 Si 0.947 3.053 22 H -0.278 1.278 23 H -0.282 1.282 24 H -0.273 1.273 25 C -0.114 4.114 26 C 0.136 3.864 27 C -0.075 4.075 28 H 0.068 0.932 29 C -0.153 4.153 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.049 0.951 41 H 0.404 0.596 42 H 0.088 0.912 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.027 0.973 46 H 0.006 0.994 47 H 0.261 0.739 48 H 0.064 0.936 49 H 0.040 0.960 50 H 0.067 0.933 51 H 0.078 0.922 52 H 0.061 0.939 53 H 0.047 0.953 54 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.446 17.805 -11.049 22.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.099 4.099 3 H 0.094 0.906 4 C -0.151 4.151 5 C -0.156 4.156 6 C -0.152 4.152 7 C -0.105 4.105 8 H 0.098 0.902 9 C 0.021 3.979 10 N -0.394 5.394 11 C 0.403 3.597 12 O -0.521 6.521 13 N -0.358 5.358 14 C -0.001 4.001 15 C -0.149 4.149 16 C 0.028 3.972 17 C -0.572 4.572 18 H 0.064 0.936 19 C -0.181 4.181 20 N -0.550 5.550 21 Si 0.773 3.227 22 H -0.204 1.204 23 H -0.208 1.208 24 H -0.198 1.198 25 C -0.152 4.152 26 C 0.013 3.987 27 C -0.094 4.094 28 H 0.087 0.913 29 C -0.210 4.210 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.243 0.757 42 H 0.106 0.894 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.046 0.954 46 H 0.024 0.976 47 H 0.071 0.929 48 H 0.083 0.917 49 H 0.058 0.942 50 H 0.086 0.914 51 H 0.096 0.904 52 H 0.081 0.919 53 H 0.066 0.934 54 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.951 17.969 -10.619 23.123 hybrid contribution -1.374 -0.836 0.345 1.645 sum 8.577 17.134 -10.274 21.741 Atomic orbital electron populations 1.21958 0.95376 1.02026 1.01675 1.21078 0.95629 0.99123 0.94104 0.90600 1.21599 1.00897 0.95260 0.97389 1.21544 1.01069 0.95835 0.97154 1.21613 1.01155 0.98544 0.93911 1.21386 1.00933 0.95203 0.92931 0.90176 1.21343 0.97750 0.80566 0.98277 1.45264 1.51858 1.15715 1.26581 1.16019 0.81015 0.80483 0.82179 1.90821 1.38382 1.76810 1.46044 1.47391 1.46287 1.17961 1.24206 1.21659 0.89745 0.99400 0.89254 1.21684 0.95313 0.97843 1.00105 1.18593 0.93214 0.93135 0.92248 1.21526 1.02087 1.35914 0.97677 0.93596 1.25620 1.00931 0.96150 0.95363 1.69968 1.36397 1.41679 1.06979 0.85714 0.80295 0.77838 0.78810 1.20420 1.20793 1.19793 1.21878 0.94917 0.99533 0.98877 1.21445 0.97067 0.93222 0.86977 1.21040 0.96063 0.93724 0.98546 0.91322 1.22000 0.94941 1.02123 1.01983 0.92408 0.93030 0.92280 0.91480 0.91544 0.91676 0.91679 0.92510 0.91563 0.92181 0.93277 0.75701 0.89413 0.91596 0.90660 0.95383 0.97562 0.92947 0.91696 0.94151 0.91436 0.90351 0.91946 0.93390 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 8.50 71.98 0.61 -1.34 16 2 C -0.08 -0.99 2.72 -10.79 -0.03 -1.02 16 3 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 4 C -0.11 -1.32 5.18 30.60 0.16 -1.16 16 5 C -0.12 -1.54 5.65 30.59 0.17 -1.37 16 6 C -0.11 -1.78 4.80 30.60 0.15 -1.63 16 7 C -0.09 -1.44 1.72 -10.79 -0.02 -1.46 16 8 H 0.08 1.38 6.43 -2.39 -0.02 1.36 16 9 C 0.14 3.38 4.57 86.38 0.39 3.77 16 10 N -0.74 -20.13 5.20 -478.54 -2.49 -22.62 16 11 C 0.70 25.15 8.30 179.06 1.49 26.63 16 12 O -0.64 -27.01 15.79 -4.00 -0.06 -27.07 16 13 N -0.62 -22.42 2.98 -837.74 -2.50 -24.92 16 14 C 0.12 4.19 6.40 86.22 0.55 4.74 16 15 C -0.11 -4.82 5.18 30.53 0.16 -4.66 16 16 C 0.05 2.24 2.01 -11.51 -0.02 2.22 16 17 C -0.53 -28.74 8.49 25.60 0.22 -28.53 16 18 H 0.05 2.49 7.75 -2.91 -0.02 2.46 16 19 C 0.02 0.99 5.36 84.65 0.45 1.45 16 20 N -0.91 -49.98 11.53 21.45 0.25 -49.73 16 21 Si 0.95 42.71 29.54 68.60 2.03 44.74 16 22 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 24 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 25 C -0.11 -4.73 5.30 30.67 0.16 -4.57 16 26 C 0.14 5.06 6.42 86.36 0.55 5.62 16 27 C -0.07 -1.08 2.25 -10.79 -0.02 -1.10 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 C -0.15 -2.17 8.15 71.98 0.59 -1.58 16 30 H 0.06 0.80 4.81 -2.38 -0.01 0.79 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.07 0.76 6.43 -2.39 -0.02 0.74 16 34 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 35 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.06 0.87 6.43 -2.39 -0.02 0.85 16 37 H 0.06 0.94 7.18 -2.39 -0.02 0.93 16 38 H 0.07 1.06 6.43 -2.39 -0.02 1.04 16 39 H 0.06 1.50 6.71 -2.39 -0.02 1.48 16 40 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.40 9.53 5.11 -92.71 -0.47 9.06 16 42 H 0.09 2.43 5.57 -2.39 -0.01 2.42 16 43 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 44 H 0.08 3.66 6.30 -2.38 -0.02 3.64 16 45 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 47 H 0.26 13.68 8.31 -92.71 -0.77 12.91 16 48 H 0.06 2.60 8.14 -2.39 -0.02 2.59 16 49 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 50 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 51 H 0.08 2.94 7.03 -2.39 -0.02 2.92 16 52 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 53 H 0.05 0.80 6.54 -2.38 -0.02 0.78 16 54 H 0.06 0.88 4.81 -2.39 -0.01 0.87 16 Total: -1.00 -62.31 387.17 3.19 -59.12 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: 0.40 Total: 24.48 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: 5.56 Total: -4.00 kcal Atomic # 7 Polarization: -92.53 SS G_CDS: -4.73 Total: -97.27 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.06 Total: -27.07 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -62.31 3.19 -59.12 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580269740.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.839 kcal (2) G-P(sol) polarization free energy of solvation -62.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds